Experiment set8IT059 for Pseudomonas putida KT2440

Compare to:

Adaptation in M9 media timecourse 1; day 3

200 most important genes:

  gene name fitness t score description  
PP_4723 -5.4 -6.4 Carbamoyl-phosphate synthase large chain compare
PP_4724 -4.9 -5.8 Carbamoyl-phosphate synthase small chain compare
PP_0290 -4.8 -8.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0422 -4.8 -5.7 Indole-3-glycerol phosphate synthase compare
PP_1898 -4.6 -3.2 MotA/TolQ/ExbB proton channel family protein compare
PP_5289 -4.6 -4.5 Acetylglutamate kinase compare
PP_0292 -4.4 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0787 -4.4 -5.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0967 -4.3 -8.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4058 -4.1 -6.2 1,4-alpha-glucan branching enzyme compare
PP_4994 -3.9 -6.5 conserved protein of unknown function compare
PP_2168 -3.8 -9.2 Transaldolase compare
PP_0966 -3.7 -10.7 Histidinol dehydrogenase compare
PP_0965 -3.7 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1088 -3.5 -8.6 Argininosuccinate synthase compare
PP_5155 -3.5 -4.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5185 -3.5 -4.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4909 -3.5 -6.3 phosphoserine phosphatase compare
PP_3511 -3.5 -8.9 Branched-chain-amino-acid aminotransferase compare
PP_4890 -3.4 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_0289 -3.4 -7.7 Imidazoleglycerol-phosphate dehydratase compare
PP_1985 -3.4 -5.6 3-isopropylmalate dehydratase large subunit compare
PP_0417 -3.2 -15.6 Anthranilate synthase component 1 compare
PP_1779 -3.2 -4.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0691 -3.2 -3.5 Glutamate 5-kinase compare
PP_5267 -3.1 -3.6 putative cytochrome c5 compare
PP_5014 -3.1 -3.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_1995 -3.0 -7.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4679 -3.0 -5.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4271 -3.0 -1.5 conserved protein of unknown function compare
PP_3519 -3.0 -1.5 putative Lipoprotein compare
PP_4678 -3.0 -12.1 Ketol-acid reductoisomerase compare
PP_5090 -2.9 -2.8 putative cell division protein compare
PP_0184 -2.8 -4.3 Argininosuccinate lyase compare
PP_4680 -2.8 -12.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -2.8 -2.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4342 -2.8 -1.9 flagellar synthesis regulator, putative ATPase compare
PP_0082 -2.7 -2.7 tryptophan synthase alpha chain compare
PP_1778 -2.7 -2.7 Lipopolysaccharide ABC export system, permease protein compare
PP_1988 -2.6 -7.8 3-isopropylmalate dehydrogenase compare
PP_0083 -2.6 -3.1 tryptophan synthase beta chain compare
PP_4999 -2.6 -1.8 dihydroorotase-like protein compare
PP_1986 -2.5 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_4217 -2.4 -15.7 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4902 -2.4 -1.7 Oligoribonuclease compare
PP_5128 -2.4 -7.1 Dihydroxy-acid dehydratase compare
PP_2348 -2.4 -5.7 Sensor histidine kinase compare
PP_4008 -2.4 -5.3 ATP-dependent serine protease compare
PP_2402 -2.3 -1.6 putative Sensor histidine kinase compare
PP_0421 -2.3 -6.5 Anthranilate phosphoribosyltransferase compare
PP_1231 -2.3 -4.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2433 -2.3 -2.2 conserved protein of unknown function compare
PP_0261 -2.2 -5.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4263 -2.1 -3.7 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4004 -2.1 -1.4 DNA translocase FtsK compare
PP_1269 -2.1 -2.3 Universal stress protein family compare
PP_t29 -2.0 -1.9 tRNA-Ala compare
PP_0127 -2.0 -4.5 Thiol:disulfide interchange protein compare
PP_4828 -1.8 -1.3 Precorrin-8X methylmutase compare
PP_2371 -1.8 -5.4 Sulphite reductase hemoprotein, beta subunit compare
PP_4262 -1.8 -2.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4505 -1.8 -6.0 Sensor histidine kinase compare
PP_5350 -1.7 -2.0 Transcriptional regulator, RpiR family compare
PP_0801 -1.7 -2.1 conserved exported protein of unknown function compare
PP_1111 -1.7 -6.1 putative Synthetase compare
PP_4060 -1.7 -11.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4836 -1.7 -3.1 conserved exported protein of unknown function compare
PP_5015 -1.6 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0735 -1.6 -2.4 molybdopterin-synthase adenylyltransferase compare
PP_1366 -1.6 -2.0 Transcriptional regulator MvaT, P16 subunit compare
PP_2370 -1.6 -2.8 conserved protein of unknown function compare
PP_2000 -1.5 -1.5 amidophosphoribosyl transferase compare
PP_1079 -1.5 -3.8 Ornithine carbamoyltransferase compare
PP_0339 -1.5 -3.3 Pyruvate dehydrogenase E1 component compare
PP_4208 -1.5 -6.3 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_0065 -1.4 -1.0 NAD-binding component of TrK potassium transporter compare
PP_5162 -1.4 -3.7 conserved exported protein of unknown function compare
PP_4009 -1.4 -4.0 ATP-dependent Clp protease adapter protein ClpS compare
PP_0888 -1.4 -1.3 Photosynthetic apparatus regulatory protein RegA compare
PP_4782 -1.4 -3.9 Phosphomethylpyrimidine kinase compare
PP_1428 -1.3 -0.9 Sigma factor AlgU negative regulatory protein compare
PP_0111 -1.3 -4.8 Electron transport protein SCO1/SenC compare
PP_5295 -1.3 -2.4 conserved protein of unknown function compare
PP_0846 -1.3 -1.2 DnaK-like molecular chaperone specific for IscU compare
PP_1187 -1.3 -3.7 sensor protein compare
PP_5054 -1.3 -1.9 glutaredoxin 3 compare
PP_4265 -1.2 -2.2 DNA-binding transcriptional dual regulator compare
PP_1110 -1.2 -3.6 serine acetyltransferase compare
PP_1198 -1.2 -2.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1999 -1.2 -2.1 membrane protein required for colicin V production compare
PP_2302 -1.2 -2.1 DNA-binding, ATP-dependent protease compare
PP_2378 -1.2 -1.6 Fe/S biogenesis protein NfuA compare
PP_1109 -1.2 -7.8 Transcriptional regulator, GntR family compare
PP_0063 -1.2 -0.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0643 -1.2 -1.4 protein of unknown function compare
PP_5104 -1.2 -5.2 thiazole synthase compare
PP_2714 -1.1 -3.6 Sensor histidine kinase compare
PP_1318 -1.1 -5.0 Cytochrome b compare
PP_5471 -1.1 -2.0 putative response regulator receiver protein compare
PP_2327 -1.1 -3.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4273 -1.1 -1.5 Transcriptional regulator, MerR family compare
PP_1022 -1.1 -2.0 glucose 6-phosphate-1-dehydrogenase compare
PP_3245 -1.1 -1.7 conserved protein of unknown function compare
PP_5139 -1.1 -4.0 cadmium translocating P-type ATPase compare
PP_4471 -1.1 -2.8 Magnesium transporter compare
PP_1317 -1.1 -3.3 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4895 -1.1 -0.7 tRNA dimethylallyltransferase compare
PP_2309 -1.1 -1.7 conserved protein of unknown function compare
PP_0291 -1.1 -1.6 conserved protein of unknown function compare
PP_1186 -1.1 -1.4 two component system DNA-binding transcriptional dual regulator compare
PP_4917 -1.1 -2.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0001 -1.0 -0.7 probable chromosome-partitioning protein compare
PP_1731 -1.0 -2.8 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_1826 -1.0 -1.7 Hydrolase, isochorismatase family compare
PP_0908 -1.0 -4.3 conserved exported protein of unknown function compare
PP_0910 -1.0 -3.3 conserved exported protein of unknown function compare
PP_5582 -1.0 -1.8 conserved protein of unknown function compare
PP_0909 -1.0 -4.2 conserved exported protein of unknown function compare
PP_2345 -1.0 -2.6 conserved exported protein of unknown function compare
PP_t10 -1.0 -1.1 tRNA-Pro compare
PP_1468 -1.0 -1.1 Tyrosine recombinase XerD compare
PP_1083 -1.0 -3.9 (2Fe-2S)-binding protein compare
PP_4214 -0.9 -2.6 pyoverdine biosynthesis related protein compare
PP_5328 -0.9 -3.3 putative phosphate transport system permease protein compare
PP_4952 -0.9 -1.3 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1025 -0.9 -4.5 2-isopropylmalate synthase compare
PP_4696 -0.9 -2.4 Nitrogen regulation protein NR(I) compare
PP_2633 -0.9 -1.8 conserved protein of unknown function compare
PP_4156 -0.9 -2.4 Transcriptional regulator, LysR family compare
PP_2499 -0.9 -1.5 conserved protein of unknown function compare
PP_3102 -0.9 -2.3 conserved protein of unknown function compare
PP_3926 -0.9 -1.1 short-chain dehydrogenase compare
PP_4356 -0.9 -1.7 Flagellar protein FliO compare
PP_0984 -0.9 -2.6 conserved membrane protein of unknown function compare
PP_0345 -0.9 -2.3 putative Heptose kinase WapP compare
PP_1216 -0.9 -0.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2002 -0.9 -2.0 putative enzyme compare
PP_0513 -0.9 -1.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1892 -0.9 -1.6 conserved protein of unknown function compare
PP_1034 -0.8 -4.1 multicopper oxidase compare
PP_0362 -0.8 -5.5 Biotin synthase compare
PP_5346 -0.8 -4.4 pyruvate carboxylase subunit B compare
PP_2328 -0.8 -3.2 Phosphoadenosine phosphosulfate reductase compare
PP_3241 -0.8 -0.8 conserved exported protein of unknown function compare
PP_4722 -0.8 -2.6 Transcription elongation factor GreA compare
PP_5347 -0.8 -5.4 pyruvate carboxylase subunit A compare
PP_5475 -0.8 -1.3 conserved protein of unknown function compare
PP_4937 -0.8 -1.8 toluene tolerance protein compare
PP_0593 -0.8 -0.7 putative ribosome-binding factor compare
PP_0409 -0.8 -4.5 Sensory box histidine kinase compare
PP_4785 -0.8 -2.9 conserved exported protein of unknown function compare
PP_5329 -0.8 -2.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1054 -0.8 -1.1 Type II secretion pathway protein XcpZ compare
PP_0420 -0.8 -3.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3798 -0.8 -2.3 conserved protein of unknown function compare
PP_4880 -0.8 -2.8 exoribonuclease R compare
PP_1381 -0.8 -1.4 4-carboxymuconolactone decarboxylase compare
PP_0913 -0.8 -3.1 conserved exported protein of unknown function compare
PP_4739 -0.8 -1.8 conserved protein of unknown function compare
PP_5327 -0.8 -2.8 putative phosphate ABC transporter, permease subunit compare
PP_1233 -0.8 -2.2 sulfurtransferase compare
PP_0048 -0.8 -1.1 conserved protein of unknown function compare
PP_5167 -0.8 -2.0 conserved hypothetical protein compare
PP_4591 -0.7 -2.3 Ribonuclease D compare
PP_1241 -0.7 -2.7 conserved protein of unknown function compare
PP_1055 -0.7 -0.9 Type II secretion pathway protein GspN compare
PP_4793 -0.7 -1.9 conserved protein of unknown function compare
PP_0832 -0.7 -1.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5348 -0.7 -4.4 Transcriptional regulator, LysR family compare
PP_2001 -0.7 -4.0 O-succinylhomoserine sulfhydrylase compare
PP_3284 -0.7 -2.4 enoyl-CoA hydratase-isomerase compare
PP_4685 -0.7 -3.1 conserved protein of unknown function compare
PP_4238 -0.7 -1.6 conserved protein of unknown function compare
PP_0809 -0.7 -3.7 disulfide bond formation protein B compare
PP_2122 -0.7 -2.2 molybdenum cofactor biosynthesis protein B compare
PP_0630 -0.7 -0.7 DNA gyrase inhibitor YacG compare
PP_1729 -0.7 -1.4 conserved protein of unknown function compare
PP_3999 -0.7 -2.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5097 -0.7 -4.9 homoserine O-acetyltransferase compare
PP_4910 -0.7 -0.7 conserved protein of unknown function compare
PP_1045 -0.7 -1.6 Type II secretion pathway protein XcpP compare
PP_5331 -0.7 -2.1 Long-chain acyl-CoA thioester hydrolase compare
PP_4148 -0.7 -4.0 putative inner membrane ABC transporter permease protein compare
PP_1362 -0.7 -1.4 pyruvate kinase II compare
PP_4101 -0.7 -3.1 Acetyltransferase, GNAT family compare
PP_0435 -0.7 -5.7 Peptidase, M23/M37 family compare
PP_4879 -0.7 -1.7 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_2304 -0.7 -2.9 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_4251 -0.7 -1.8 cytochrome c oxidase subunit, cbb3-type compare
PP_4829 -0.7 -1.7 putative precorrin-3B synthase compare
PP_3662 -0.7 -3.2 conserved protein of unknown function compare
PP_4150 -0.6 -2.6 microcin C transporter - ATP binding subunit compare
PP_4941 -0.6 -4.1 conserved exported protein of unknown function compare
PP_4215 -0.6 -2.3 pyoverdine biosynthesis related protein compare
PP_2908 -0.6 -1.9 DNA-binding transcriptional repressor compare
PP_4475 -0.6 -3.1 succinylglutamate desuccinylase compare
PP_2326 -0.6 -3.8 Universal stress protein compare
PP_4264 -0.6 -2.7 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_3800 -0.6 -2.6 conserved protein of unknown function compare
PP_2878 -0.6 -1.4 conserved protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment