Experiment set8IT059 for Agrobacterium fabrum C58

Compare to:

R2A with Vogels_fungal_media 0.2X

200 most important genes:

  gene name fitness t score description  
Atu1844 -3.4 -5.6 Phosphoribosylformylglycinamidine synthetase compare
Atu0298 -2.7 -7.1 orotidine 5 compare
Atu0434 -2.4 -3.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1688 -2.3 -7.0 indole-3-glycerol-phosphate synthase compare
Atu0399 -2.3 -7.3 dihydroorotase compare
Atu0486 -2.3 -4.6 dihydroorotate dehydrogenase compare
Atu1687 -2.2 -9.9 anthranilate phosphoribosyltransferase compare
Atu1308 -2.1 -4.2 aspartate carbamoyl transferase catalytic subunit compare
Atu1307 -2.1 -4.1 dihydroorotase compare
Atu2289 -2.1 -13.0 anthranilate synthase component I and II compare
Atu0400 -2.1 -5.2 orotate phosphoribosyltransferase compare
Atu2728 -2.1 -6.2 beta (1-->2) glucan export ATP-binding protein compare
Atu0999 -1.7 -7.2 magnesium transport protein compare
Atu1845 -1.7 -3.5 phosphoribosylformylglycinamidine synthase I compare
Atu3755 -1.7 -5.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3754 -1.7 -5.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3469 -1.6 -2.3 phosphoglyceromutase compare
Atu0017 -1.5 -3.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0953 -1.5 -1.6 hypothetical protein compare
Atu0184 -1.5 -3.3 glucokinase compare
Atu1141 -1.4 -5.7 Phosphoribosylglycinamide synthetase compare
Atu1075 -1.4 -5.0 amidophosphoribosyltransferase compare
Atu0876 -1.4 -2.1 superoxide dismutase compare
Atu6036 -1.3 -1.3 entry-exclusion protein compare
Atu4317 -1.2 -2.3 TetR family transcriptional regulator compare
Atu1686 -1.2 -8.6 peptidyl-prolyl cis-trans isomerse D compare
Atu0319 -1.1 -1.7 ubiquinone biosynthesis protein compare
Atu0647 -1.1 -4.2 phosphoribosylamine--glycine ligase compare
Atu1140 -1.1 -3.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2464 -1.1 -3.1 formyltetrahydrofolate deformylase compare
Atu1850 -1.1 -3.8 phosphoribosylformylglycinamidine synthetase II compare
Atu2040 -1.1 -4.3 phosphoserine phosphatase compare
Atu1446 -1.0 -2.1 two component response regulator compare
Atu3706 -1.0 -5.5 D-3-phosphoglycerate dehydrogenase compare
Atu1589 -0.9 -5.4 aminotransferase, class I compare
Atu1232 -0.9 -2.4 hypothetical protein compare
Atu4502 -0.9 -4.1 cobalamin synthesis protein compare
Atu1344 -0.9 -2.3 hypothetical protein compare
Atu4217 -0.9 -1.8 TetR family transcriptional regulator compare
Atu2183 -0.9 -4.9 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0971 -0.9 -3.4 two component sensor kinase compare
Atu0346 -0.9 -2.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2125 -0.8 -1.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu0189 -0.8 -3.3 ABC transporter, membrane spanning protein (peptide) compare
Atu0188 -0.8 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu2548 -0.8 -6.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0941 -0.8 -1.0 hypothetical protein compare
Atu3739 -0.8 -2.2 phosphoglycerate kinase compare
Atu4711 -0.8 -4.1 two component sensor kinase compare
Atu4540 -0.8 -2.6 protocatechuate 3,4-dioxygenase subunit beta compare
Atu4053 -0.8 -1.4 succinoglycan biosynthesis protein compare
Atu1685 -0.8 -1.1 hypothetical protein compare
Atu5164 -0.8 -0.8 type IV secretion protein AvhB3 compare
Atu1774 -0.8 -4.5 ABC transporter, substrate binding protein (peptide) compare
Atu8056 -0.7 -1.0 hypothetical protein compare
Atu4616 -0.7 -1.7 dTDP-4-dehydrorhamnose reductase compare
Atu2163 -0.7 -1.4 hypothetical protein compare
Atu4346 -0.7 -2.8 hypothetical protein compare
Atu0598 -0.7 -3.7 phosphogluconate dehydratase compare
Atu0912 -0.7 -1.2 Na+/H+ antiporter compare
Atu3423 -0.7 -1.4 hypothetical protein compare
Atu6189 -0.7 -0.8 protein secretion chaperone compare
Atu0190 -0.7 -3.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu6045 -0.7 -1.1 replication protein C compare
Atu6114 -0.7 -1.4 hypothetical protein compare
Atu2439 -0.7 -1.2 hypothetical protein compare
Atu3603 -0.7 -2.0 two component response regulator compare
Atu2554 -0.7 -1.2 lysyl-tRNA synthetase compare
Atu0353 -0.7 -3.7 acetyltransferase compare
Atu5152 -0.7 -2.5 hypothetical protein compare
Atu0201 -0.7 -1.9 hypothetical protein compare
Atu0692 -0.7 -4.7 glutathione-regulated potassium-efflux system protein compare
Atu0533 -0.7 -1.8 putative inhibitor of septum formation compare
Atu8151 -0.7 -1.7 hypothetical protein compare
Atu0795 -0.7 -1.0 hypothetical protein compare
Atu4072 -0.7 -1.0 nodulation protein N compare
Atu0422 -0.6 -1.6 ABC transporter, membrane spanning protein compare
Atu5010 -0.6 -1.8 hypothetical protein compare
Atu0041 -0.6 -1.4 glutamine amidotransferase compare
Atu1066 -0.6 -2.6 hypothetical protein compare
Atu3773 -0.6 -1.5 hypothetical protein compare
Atu3668 -0.6 -1.5 siderophore biosynthesis protein compare
Atu5160 -0.6 -1.3 transcriptional regulator protein compare
Atu2726 -0.6 -5.1 pyruvate carboxylase compare
Atu0413 -0.6 -1.1 stress induced protein compare
Atu6009 -0.6 -2.4 indole-3-lactate synthase compare
Atu4618 -0.6 -3.9 dTDP-rhamnose-3,5-epimerase compare
Atu3509 -0.6 -2.2 hypothetical protein compare
Atu6098 -0.6 -0.5 transcriptional regulator, HTH family compare
Atu1677 -0.6 -2.4 queuine tRNA-ribosyltransferase compare
Atu3429 -0.6 -1.1 hypothetical protein compare
Atu1043 -0.6 -2.6 hypothetical protein compare
Atu1810 -0.6 -1.1 hypothetical protein compare
Atu0040 -0.6 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3353 -0.6 -4.0 mannose-1-phosphate guanylyltransferase compare
Atu3126 -0.6 -2.8 hypothetical protein compare
Atu6197 -0.6 -2.2 agrocinopine phosphodiesterase compare
Atu0421 -0.6 -0.9 ABC transporter, membrane spanning protein compare
Atu3017 -0.6 -1.1 phosphoglyceromutase compare
Atu0479 -0.6 -2.8 ABC transporter, substrate binding protein (amino acid) compare
Atu0485 -0.6 -1.5 hypothetical protein compare
Atu1076 -0.6 -2.2 colicin V production protein compare
Atu5054 -0.5 -2.8 hypothetical protein compare
Atu1291 -0.5 -1.5 hypothetical protein compare
Atu1470 -0.5 -0.6 Camphor resistance protein compare
Atu8052 -0.5 -0.9 hypothetical protein compare
Atu3519 -0.5 -3.5 peptidyl-prolyl cis-trans isomerase compare
Atu2797 -0.5 -2.4 cobalamin biosynthesis protein compare
Atu3730 -0.5 -1.1 hypothetical protein compare
Atu1619 -0.5 -1.8 protein-export membrane protein SECG compare
Atu3727 -0.5 -2.3 hypothetical protein compare
Atu1602 -0.5 -2.9 transcriptional activator, Crp family compare
Atu0368 -0.5 -2.0 tRNA pseudouridine synthase I compare
Atu2113 -0.5 -2.0 N-acetylmuramoyl-L-alanine amidase compare
Atu2052 -0.5 -3.0 hypothetical protein compare
Atu8159 -0.5 -1.2 hypothetical protein compare
Atu0817 -0.5 -3.6 sulfate adenylate transferase, subunit 2 compare
Atu5034 -0.5 -0.9 hypothetical protein compare
Atu5045 -0.5 -1.2 hypothetical protein compare
Atu4869 -0.5 -1.8 hypothetical protein compare
Atu1629 -0.5 -0.9 transcriptional regulator, ArsR family compare
Atu4527 -0.5 -1.1 hypothetical protein compare
Atu8118 -0.5 -2.5 putative universal stress protein compare
Atu1566 -0.5 -0.8 hypothetical protein compare
Atu2379 -0.5 -3.6 phosphomannomutase compare
Atu4143 -0.5 -2.1 hypothetical protein compare
Atu0085 -0.5 -1.9 tRNA pseudouridine 55 synthase compare
Atu3160 -0.5 -1.3 hypothetical protein compare
Atu0031 -0.5 -0.7 PTS system, IIA component compare
Atu3336 -0.5 -1.5 hypothetical protein compare
Atu3311 -0.5 -3.5 phosphomannose isomerase compare
Atu5169 -0.5 -1.2 type IV secretion protein AvhB8 compare
Atu3315 -0.5 -1.5 UDP-glucose 4-epimerase compare
Atu3008 -0.5 -0.8 hypothetical protein compare
Atu0185 -0.5 -1.6 methylglyoxal synthase compare
Atu0687 -0.5 -1.1 hypothetical protein compare
Atu4773 -0.5 -0.8 two component response regulator compare
Atu4144 -0.5 -0.7 hypothetical protein compare
Atu1077 -0.5 -1.5 DNA repair protein compare
Atu0499 -0.5 -3.0 hypothetical protein compare
Atu3783 -0.4 -3.1 glutamate synthase subunit beta compare
Atu4166 -0.4 -1.4 UDP-glucose 4-epimerase compare
Atu0572 -0.4 -1.3 hypothetical protein compare
Atu4615 -0.4 -3.1 glucose-1-phosphate thymidylyltransferase compare
Atu4139 -0.4 -1.2 hypothetical protein compare
Atu1880 -0.4 -1.5 ABC transporter, membrane spanning protein (amino acid) compare
Atu1457 -0.4 -1.1 hypothetical protein compare
Atu6033 -0.4 -2.1 conjugal transfer protein compare
Atu5470 -0.4 -1.1 hypothetical protein compare
Atu0926 -0.4 -2.1 hypothetical protein compare
Atu1775 -0.4 -1.6 polyketide biosynthesis associated protein compare
Atu4148 -0.4 -2.0 UDP-glucuronic acid epimerase compare
Atu3784 -0.4 -3.6 glutamate synthase large subunit compare
Atu3721 -0.4 -1.1 hypothetical protein compare
Atu3674 -0.4 -1.2 hypothetical protein compare
Atu2831 -0.4 -2.0 glucose inhibited division protein A compare
Atu0464 -0.4 -1.9 hypothetical protein compare
Atu5540 -0.4 -0.4 hypothetical protein compare
Atu0401 -0.4 -1.5 fructokinase compare
Atu2217 -0.4 -1.7 hypothetical protein compare
Atu0769 -0.4 -1.0 protoheme IX farnesyltransferase compare
Atu3032 -0.4 -1.1 hypothetical protein compare
Atu1249 -0.4 -2.5 hypothetical protein compare
Atu2768 -0.4 -1.9 hypothetical protein compare
Atu1904 -0.4 -2.1 transcriptional regulator compare
Atu3277 -0.4 -1.9 nitrilotriacetate monooxygenase compare
Atu1874 -0.4 -1.4 RecA protein compare
Atu0788 -0.4 -1.8 hypothetical protein compare
Atu1793 -0.4 -2.0 phosphatidylcholine synthase compare
Atu0943 -0.4 -0.5 hypothetical protein compare
Atu2352 -0.4 -1.2 hypothetical protein compare
Atu3707 -0.4 -1.4 phosphoserine aminotransferase compare
Atu5427 -0.4 -0.8 hypothetical protein compare
Atu1056 -0.4 -2.0 hypothetical protein compare
Atu2407 -0.4 -1.7 urease gamma subunit compare
Atu2177 -0.4 -1.9 hypothetical protein compare
Atu2239 -0.4 -1.5 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu4437 -0.4 -1.1 LysR family transcriptional regulator compare
Atu1463 -0.4 -2.3 glycine cleavage system component H compare
Atu4142 -0.4 -2.2 proteinase compare
Atu2238 -0.4 -2.6 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1021 -0.4 -1.1 outer membrane protein compare
Atu8136 -0.4 -2.4 hypothetical protein compare
Atu0956 -0.4 -1.6 phage prohead protease compare
Atu0467 -0.4 -1.9 hypothetical protein compare
Atu0106 -0.4 -1.3 cold shock protein compare
Atu2293 -0.4 -1.3 hypothetical protein compare
Atu2026 -0.4 -2.0 exodeoxyribonuclease V compare
Atu3812 -0.4 -2.1 hypothetical protein compare
Atu2832 -0.4 -1.2 tRNA modification GTPase compare
Atu4481 -0.4 -1.7 LacI family transcriptional regulator compare
Atu2585 -0.4 -1.8 hypothetical protein compare
Atu5430 -0.4 -0.5 hypothetical protein compare
Atu3763 -0.4 -0.5 hypothetical protein compare
Atu2824 -0.4 -1.7 hypothetical protein compare
Atu1103 -0.4 -1.4 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1634 -0.4 -0.9 hypothetical protein compare
Atu8202 -0.4 -1.5 hypothetical protein compare
Atu5515 -0.4 -1.8 hypothetical protein compare
Atu1337 -0.4 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms