Experiment set8IT058 for Pseudomonas putida KT2440

Compare to:

Adaptation in M9 media timecourse 1; day 2

200 most important genes:

  gene name fitness t score description  
PP_4723 -6.5 -4.5 Carbamoyl-phosphate synthase large chain compare
PP_4724 -4.8 -8.0 Carbamoyl-phosphate synthase small chain compare
PP_0691 -4.6 -4.4 Glutamate 5-kinase compare
PP_0846 -4.1 -2.8 DnaK-like molecular chaperone specific for IscU compare
PP_5155 -3.3 -3.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4909 -3.0 -7.4 phosphoserine phosphatase compare
PP_4058 -2.8 -11.6 1,4-alpha-glucan branching enzyme compare
PP_t29 -2.8 -2.7 tRNA-Ala compare
PP_2000 -2.7 -1.9 amidophosphoribosyl transferase compare
PP_2402 -2.7 -2.6 putative Sensor histidine kinase compare
PP_1088 -2.7 -11.5 Argininosuccinate synthase compare
PP_3241 -2.6 -1.8 conserved exported protein of unknown function compare
PP_0966 -2.5 -11.5 Histidinol dehydrogenase compare
PP_0290 -2.5 -9.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1898 -2.5 -4.1 MotA/TolQ/ExbB proton channel family protein compare
PP_2168 -2.4 -9.1 Transaldolase compare
PP_5289 -2.4 -5.0 Acetylglutamate kinase compare
PP_5014 -2.4 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0184 -2.4 -5.7 Argininosuccinate lyase compare
PP_0965 -2.2 -10.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4994 -2.2 -5.9 conserved protein of unknown function compare
PP_4902 -2.1 -2.4 Oligoribonuclease compare
PP_0293 -2.0 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0967 -2.0 -9.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0292 -1.9 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1995 -1.9 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5015 -1.9 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4342 -1.9 -3.5 flagellar synthesis regulator, putative ATPase compare
PP_0083 -1.8 -4.8 tryptophan synthase beta chain compare
PP_0833 -1.8 -1.2 queuine tRNA-ribosyltransferase compare
PP_5017 -1.7 -1.2 Sec-independent protein translocase protein TatB compare
PP_2433 -1.7 -3.4 conserved protein of unknown function compare
PP_0289 -1.7 -5.5 Imidazoleglycerol-phosphate dehydratase compare
PP_4008 -1.6 -5.7 ATP-dependent serine protease compare
PP_1664 -1.6 -3.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_0082 -1.5 -3.9 tryptophan synthase alpha chain compare
PP_1988 -1.5 -6.9 3-isopropylmalate dehydrogenase compare
PP_4890 -1.5 -4.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_5185 -1.5 -5.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2302 -1.5 -3.9 DNA-binding, ATP-dependent protease compare
PP_1317 -1.4 -4.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1344 -1.4 -1.6 conserved protein of unknown function compare
PP_4213 -1.4 -2.6 putative dipeptidase compare
PP_1598 -1.4 -3.6 regulatory intramembrane protein RIP zinc protease compare
PP_4217 -1.4 -11.5 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_4999 -1.4 -1.8 dihydroorotase-like protein compare
PP_4122 -1.4 -1.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0593 -1.3 -1.1 putative ribosome-binding factor compare
PP_4223 -1.3 -2.0 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4260 -1.3 -3.5 conserved protein of unknown function compare
PP_0856 -1.3 -1.8 conserved lipoprotein of unknown function compare
PP_1231 -1.3 -4.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1217 -1.3 -1.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4004 -1.3 -2.5 DNA translocase FtsK compare
PP_4642 -1.2 -1.4 Cyclic diguanosine monophosphate-binding protein compare
PP_1468 -1.2 -1.5 Tyrosine recombinase XerD compare
PP_4836 -1.2 -2.0 conserved exported protein of unknown function compare
PP_4680 -1.2 -7.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3999 -1.2 -5.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1034 -1.1 -5.4 multicopper oxidase compare
PP_2371 -1.1 -4.5 Sulphite reductase hemoprotein, beta subunit compare
PP_5350 -1.1 -2.7 Transcriptional regulator, RpiR family compare
PP_1362 -1.1 -2.5 pyruvate kinase II compare
PP_4678 -1.1 -7.1 Ketol-acid reductoisomerase compare
PP_3511 -1.1 -6.0 Branched-chain-amino-acid aminotransferase compare
PP_4263 -1.1 -2.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5475 -1.1 -2.3 conserved protein of unknown function compare
PP_1994 -1.1 -1.0 tRNA pseudouridine (38-40)synthase compare
PP_4943 -1.1 -1.0 putative Glycosyl transferase compare
PP_1142 -1.0 -0.9 conserved protein of unknown function compare
PP_1986 -1.0 -2.8 3-isopropylmalate dehydratase small subunit compare
PP_0127 -1.0 -3.2 Thiol:disulfide interchange protein compare
PP_1198 -1.0 -1.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1678 -1.0 -2.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0339 -1.0 -3.3 Pyruvate dehydrogenase E1 component compare
PP_0422 -1.0 -3.4 Indole-3-glycerol phosphate synthase compare
PP_5508 -1.0 -1.3 conserved protein of unknown function compare
PP_4880 -1.0 -4.2 exoribonuclease R compare
PP_1022 -1.0 -3.0 glucose 6-phosphate-1-dehydrogenase compare
PP_1319 -1.0 -3.9 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0910 -1.0 -4.2 conserved exported protein of unknown function compare
PP_5445 -0.9 -2.2 conserved protein of unknown function compare
PP_0421 -0.9 -4.5 Anthranilate phosphoribosyltransferase compare
PP_5546 -0.9 -2.4 conserved protein of unknown function compare
PP_2306 -0.9 -1.8 conserved exported protein of unknown function compare
PP_4009 -0.9 -2.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_4679 -0.9 -3.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -0.9 -7.4 Anthranilate synthase component 1 compare
PP_4799 -0.9 -0.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4273 -0.9 -2.5 Transcriptional regulator, MerR family compare
PP_0063 -0.9 -1.7 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4696 -0.9 -2.6 Nitrogen regulation protein NR(I) compare
PP_1214 -0.9 -1.6 putative transcriptional regulatory protein compare
PP_4098 -0.9 -1.3 UvrABC system protein C compare
PP_5328 -0.9 -3.0 putative phosphate transport system permease protein compare
PP_4208 -0.9 -3.6 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1318 -0.9 -3.9 Cytochrome b compare
PP_0855 -0.9 -1.6 conserved protein of unknown function compare
PP_3365 -0.9 -1.4 Acetolactate synthase compare
PP_2348 -0.9 -3.2 Sensor histidine kinase compare
PP_4253 -0.9 -2.5 cytochrome c oxidase subunit, cbb3-type compare
PP_4261 -0.9 -3.4 cation-transporting P-type ATPase compare
PP_1079 -0.9 -3.1 Ornithine carbamoyltransferase compare
PP_5505 -0.9 -2.8 conserved transmembrane protein of unknown function compare
PP_0261 -0.8 -3.8 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5128 -0.8 -4.6 Dihydroxy-acid dehydratase compare
PP_2720 -0.8 -1.5 conserved protein of unknown function compare
PP_5095 -0.8 -1.4 pyrroline-5-carboxylate reductase compare
PP_1045 -0.8 -2.0 Type II secretion pathway protein XcpP compare
PP_0111 -0.8 -3.4 Electron transport protein SCO1/SenC compare
PP_0246 -0.8 -1.5 two-component system DNA-binding response transcriptional dual regulator compare
PP_0003 -0.8 -2.0 16S RNA methyltransferase compare
PP_2740 -0.8 -2.1 Transcriptional regulator, MerR family compare
PP_2511 -0.8 -2.6 conserved protein of unknown function compare
PP_0048 -0.8 -1.4 conserved protein of unknown function compare
PP_4937 -0.8 -2.2 toluene tolerance protein compare
PP_1381 -0.8 -1.7 4-carboxymuconolactone decarboxylase compare
PP_1001 -0.8 -4.0 arginine deiminase compare
PP_4250 -0.8 -4.6 cytochrome c oxidase subunit I, cbb3-type compare
PP_5028 -0.8 -1.5 proline iminopeptidase compare
PP_0250 -0.8 -1.5 heat shock protein Hsp15 involved in ribosome recycling compare
PP_5346 -0.8 -4.6 pyruvate carboxylase subunit B compare
PP_4835 -0.8 -1.4 conserved exported protein of unknown function compare
PP_4262 -0.8 -2.0 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4265 -0.8 -1.9 DNA-binding transcriptional dual regulator compare
PP_1632 -0.8 -1.4 conserved protein of unknown function compare
PP_0435 -0.7 -6.4 Peptidase, M23/M37 family compare
PP_1185 -0.7 -3.2 Outer membrane protein H1 compare
PP_1734 -0.7 -0.5 Probable septum site-determining protein MinC compare
PP_1187 -0.7 -3.1 sensor protein compare
PP_4060 -0.7 -5.5 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_2029 -0.7 -0.9 von Willebrand factor type A domain protein compare
PP_4910 -0.7 -1.0 conserved protein of unknown function compare
PP_4251 -0.7 -2.3 cytochrome c oxidase subunit, cbb3-type compare
PP_1528 -0.7 -1.0 conserved protein of unknown function compare
PP_2456 -0.7 -2.3 D-ribose ABC transporter - permease subunit compare
PP_4482 -0.7 -2.9 Transcriptional regulator, AraC family compare
PP_3098 -0.7 -1.2 conserved protein of unknown function compare
PP_2581 -0.7 -1.8 conserved protein of unknown function compare
PP_4471 -0.7 -2.4 Magnesium transporter compare
PP_5428 -0.7 -3.0 conserved exported protein of unknown function compare
PP_5058 -0.7 -2.7 Carboxy-terminal-processing protease compare
PP_1428 -0.7 -0.9 Sigma factor AlgU negative regulatory protein compare
PP_1788 -0.7 -1.1 conserved protein of unknown function compare
PP_3810 -0.7 -1.2 conserved protein of unknown function compare
PP_0164 -0.7 -2.9 conserved protein of unknown function compare
PP_4507 -0.7 -3.9 potassium transporter compare
PP_5528 -0.7 -1.1 conserved protein of unknown function compare
PP_0218 -0.7 -3.7 Sensory box protein compare
PP_1589 -0.7 -3.3 uridylyltransferase compare
PP_0995 -0.7 -2.6 conserved membrane protein of unknown function compare
PP_2378 -0.7 -1.4 Fe/S biogenesis protein NfuA compare
PP_0565 -0.6 -1.8 putative enzyme compare
PP_4236 -0.6 -3.1 putative Thiol:disulfide interchange protein dsbE compare
PP_0040 -0.6 -2.0 hypothetical protein compare
PP_0984 -0.6 -2.2 conserved membrane protein of unknown function compare
PP_1774 -0.6 -1.6 conserved exported protein of unknown function compare
PP_2773 -0.6 -1.4 conserved protein of unknown function compare
PP_5327 -0.6 -3.1 putative phosphate ABC transporter, permease subunit compare
PP_2327 -0.6 -3.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3662 -0.6 -3.8 conserved protein of unknown function compare
PP_4561 -0.6 -0.7 stress response protein compare
PP_t10 -0.6 -1.1 tRNA-Pro compare
PP_0834 -0.6 -0.8 Sec translocation complex subunit YajC compare
PP_1654 -0.6 -1.4 cysteine synthase B compare
PP_1702 -0.6 -1.7 Recombination-associated protein RdgC compare
PP_2793 -0.6 -1.6 Acyl-CoA dehydrogenase family protein compare
PP_4917 -0.6 -1.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3496 -0.6 -1.9 Endoribonuclease L-PSP compare
PP_2345 -0.6 -1.3 conserved exported protein of unknown function compare
PP_2547 -0.6 -2.7 Transcriptional regulator, LysR family compare
PP_1186 -0.6 -1.1 two component system DNA-binding transcriptional dual regulator compare
PP_0291 -0.6 -1.4 conserved protein of unknown function compare
PP_1985 -0.6 -2.2 3-isopropylmalate dehydratase large subunit compare
PP_5216 -0.6 -1.3 exopolyphosphatase compare
PP_4895 -0.6 -1.0 tRNA dimethylallyltransferase compare
PP_2328 -0.6 -2.4 Phosphoadenosine phosphosulfate reductase compare
PP_3880 -0.6 -1.0 conserved exported protein of unknown function compare
PP_0484 -0.6 -2.6 transporter of an unknown substrate compare
PP_1719 -0.6 -3.4 Tail-specific protease prc compare
PP_1048 -0.6 -1.4 putative protein secretion protein for export compare
PP_4591 -0.6 -2.3 Ribonuclease D compare
PP_2304 -0.6 -2.5 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_2370 -0.6 -1.0 conserved protein of unknown function compare
PP_0809 -0.6 -3.5 disulfide bond formation protein B compare
PP_0913 -0.6 -2.2 conserved exported protein of unknown function compare
PP_1410 -0.6 -1.1 conserved protein of unknown function compare
PP_0351 -0.6 -3.1 putative Transmembrane sensor protein compare
PP_5008 -0.6 -0.7 Poly granule-associated protein compare
PP_2309 -0.6 -1.2 conserved protein of unknown function compare
PP_5329 -0.6 -2.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0566 -0.6 -1.1 translation-related factor compare
PP_4785 -0.5 -3.2 conserved exported protein of unknown function compare
PP_4264 -0.5 -2.6 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_4879 -0.5 -1.6 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_5267 -0.5 -0.8 putative cytochrome c5 compare
PP_0852 -0.5 -1.1 Transcriptional regulator, Cro/CI family compare
PP_1536 -0.5 -1.9 conserved protein of unknown function compare
PP_0787 -0.5 -1.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4811 -0.5 -2.1 Gamma-glutamyl phosphate reductase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in reactor_pregrowth experiments