| | gene | name | fitness | t score | description | |
|---|
| b1913 | uvrC | -5.3 | -3.6 | excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) | conserved |
| b4058 | uvrA | -5.3 | -12.7 | excinuclease ABC subunit A (NCBI) | conserved |
| b0779 | uvrB | -5.0 | -4.9 | excinuclease ABC subunit B (NCBI) | conserved |
| b3961 | oxyR | -5.0 | -8.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0472 | recR | -4.9 | -6.7 | recombination protein RecR (NCBI) | conserved |
| b3908 | sodA | -4.8 | -5.6 | superoxide dismutase, manganese (VIMSS) | compare |
| b2565 | recO | -4.5 | -6.0 | DNA repair protein RecO (NCBI) | conserved |
| b3247 | cafA | -4.1 | -10.8 | bundles of cytoplasmic filaments (VIMSS) | compare |
| b3700 | recF | -4.0 | -10.4 | recombination protein F (NCBI) | conserved |
| b2784 | relA | -4.0 | -6.7 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b4585 | sroB | -3.9 | -1.5 | Novel sRNA, function unknown (RefSeq) | compare |
| b3035 | tolC | -3.9 | -5.9 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b2688 | gshA | -3.6 | -4.3 | glutamate--cysteine ligase (NCBI) | compare |
| b3813 | uvrD | -3.5 | -14.1 | DNA-dependent ATPase I and helicase II (NCBI) | compare |
| b2501 | ppk | -3.5 | -7.8 | polyphosphate kinase (NCBI) | compare |
| b0881 | clpS | -3.4 | -1.9 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b2259 | pmrD | -3.4 | -1.3 | polymyxin resistance protein B (VIMSS) | compare |
| b2947 | gshB | -3.3 | -2.3 | glutathione synthetase (NCBI) | compare |
| b1677 | lpp | -3.2 | -3.0 | murein lipoprotein (NCBI) | compare |
| b4451 | ryhB | -3.1 | -2.0 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b4201 | priB | -3.1 | -3.0 | primosomal replication protein N (NCBI) | compare |
| b4410 | ecnA | -3.1 | -1.7 | entericidin A membrane lipoprotein, antidote entericidin B (NCBI) | compare |
| b2168 | fruK | -3.0 | -1.9 | 1-phosphofructokinase (NCBI) | compare |
| b2892 | recJ | -2.9 | -10.3 | ssDNA exonuclease, 5' --> 3'-specific (NCBI) | compare |
| b3871 | bipA | -2.9 | -8.8 | GTP-binding protein (NCBI) | compare |
| b0579 | ybdF | -2.9 | -3.0 | hypothetical protein (NCBI) | compare |
| b2553 | glnB | -2.8 | -5.2 | regulatory protein P-II for glutamine synthetase (NCBI) | compare |
| b1830 | prc | -2.7 | -4.0 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b2531 | iscR | -2.6 | -1.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0462 | acrB | -2.6 | -15.3 | multidrug efflux system protein (NCBI) | compare |
| b0957 | ompA | -2.6 | -3.7 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b0212 | gloB | -2.6 | -3.0 | predicted hydroxyacylglutathione hydrolase (NCBI) | compare |
| b0088 | murD | -2.6 | -2.7 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b1252 | tonB | -2.5 | -3.3 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b0149 | mrcB | -2.5 | -12.9 | penicillin-binding protein 1b (NCBI) | compare |
| b3652 | recG | -2.5 | -5.5 | ATP-dependent DNA helicase (NCBI) | compare |
| b3414 | gntY | -2.5 | -5.3 | predicted gluconate transport associated protein (NCBI) | compare |
| b3387 | dam | -2.5 | -10.0 | DNA adenine methylase (NCBI) | compare |
| b2948 | yqgE | -2.4 | -3.2 | orf, hypothetical protein (VIMSS) | compare |
| b1493 | gadB | -2.4 | -0.9 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b2175 | spr | -2.4 | -4.3 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b1175 | minD | -2.4 | -4.6 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b0849 | grxA | -2.4 | -1.8 | glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) (NCBI) | compare |
| b0439 | lon | -2.4 | -2.3 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b3163 | nlpI | -2.3 | -3.7 | hypothetical protein (NCBI) | compare |
| b2684 | mprA | -2.2 | -2.5 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b1176 | minC | -2.2 | -3.2 | septum formation inhibitor (NCBI) | compare |
| b0015 | dnaJ | -2.2 | -7.2 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b0143 | pcnB | -2.2 | -6.4 | poly(A) polymerase I (VIMSS) | compare |
| b2618 | b2618 | -2.2 | -3.8 | orf, hypothetical protein (VIMSS) | compare |
| b0113 | pdhR | -2.1 | -4.6 | transcriptional regulator of pyruvate dehydrogenase complex (NCBI) | compare |
| b1882 | cheY | -2.1 | -0.8 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b3621 | rfaC | -2.1 | -3.2 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b1863 | ruvC | -2.1 | -1.4 | Holliday junction resolvase (NCBI) | compare |
| b1954 | dsrA | -2.1 | -2.0 | regulatory antisense RNA (NCBI) | compare |
| b0463 | acrA | -2.1 | -9.4 | multidrug efflux system (NCBI) | compare |
| b4505 | insX | -2.0 | -1.1 | predicted IS protein (RefSeq) | compare |
| b0222 | lpcA | -2.0 | -2.3 | phosphoheptose isomerase (NCBI) | compare |
| b1861 | ruvA | -2.0 | -1.3 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b0142 | folK | -2.0 | -0.7 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b2189 | proL | -1.9 | -1.6 | tRNA-Pro (NCBI) | compare |
| b3822 | recQ | -1.9 | -11.0 | ATP-dependent DNA helicase (NCBI) | compare |
| b3052 | rfaE | -1.9 | -4.0 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b2616 | recN | -1.9 | -8.6 | recombination and repair protein (NCBI) | conserved |
| b1109 | ndh | -1.9 | -3.8 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b4595 | yciY | -1.9 | -1.9 | hypothetical protein (RefSeq) | compare |
| b3229 | sspA | -1.9 | -1.3 | stringent starvation protein A (NCBI) | compare |
| b3726 | pstA | -1.9 | -3.8 | phosphate transporter subunit (NCBI) | compare |
| b1064 | grxB | -1.9 | -3.7 | glutaredoxin 2 (Grx2) (NCBI) | compare |
| b3842 | rfaH | -1.9 | -5.1 | transcriptional activator RfaH (NCBI) | compare |
| b2895 | fldB | -1.9 | -3.1 | flavodoxin 2 (NCBI) | compare |
| b3390 | aroK | -1.8 | -1.2 | shikimate kinase I (NCBI) | compare |
| b3781 | trxA | -1.8 | -4.4 | thioredoxin 1 (VIMSS) | compare |
| b0688 | pgm | -1.8 | -1.7 | phosphoglucomutase (NCBI) | compare |
| b3500 | gor | -1.8 | -1.2 | glutathione reductase (NCBI) | compare |
| b3839 | tatC | -1.8 | -6.2 | TatABCE protein translocation system subunit (NCBI) | compare |
| b1290 | sapF | -1.8 | -1.6 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0053 | surA | -1.8 | -2.1 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b3237 | argR | -1.8 | -3.6 | arginine repressor (NCBI) | compare |
| b0799 | dinG | -1.7 | -7.3 | ATP-dependent DNA helicase (NCBI) | compare |
| b3619 | rfaD | -1.7 | -1.7 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b4701 | sokX | -1.7 | -0.9 | sok-related sRNA, function unknown (RefSeq) | compare |
| b1070 | flgN | -1.7 | -1.2 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b0683 | fur | -1.7 | -1.5 | ferric uptake regulator (NCBI) | compare |
| b1150 | ymfR | -1.7 | -0.8 | e14 prophage; predicted protein (NCBI) | compare |
| b1860 | ruvB | -1.7 | -1.1 | Holliday junction DNA helicase B (NCBI) | compare |
| b2329 | aroC | -1.7 | -4.7 | chorismate synthase (NCBI) | compare |
| b3673 | emrD | -1.7 | -8.4 | 2-module integral membrane pump; multidrug resistance (VIMSS) | compare |
| b4407 | thiS | -1.7 | -1.7 | sulfur carrier protein ThiS (NCBI) | compare |
| b1049 | mdoH | -1.7 | -7.3 | glucosyltransferase MdoH (NCBI) | compare |
| b3616 | tdh | -1.7 | -4.2 | L-threonine 3-dehydrogenase (NCBI) | compare |
| b1476 | fdnI | -1.6 | -0.8 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b2258 | b2258 | -1.6 | -1.2 | putative transport/receptor protein (VIMSS) | compare |
| b1514 | lsrC | -1.6 | -2.1 | AI2 transporter (NCBI) | compare |
| b2576 | srmB | -1.6 | -1.5 | ATP-dependent RNA helicase (NCBI) | compare |
| b1837 | yebW | -1.6 | -2.5 | orf, hypothetical protein (VIMSS) | compare |
| b0145 | dksA | -1.6 | -1.5 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b1103 | ycfF | -1.6 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1607 | ydgC | -1.6 | -1.7 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b1814 | sdaA | -1.6 | -3.4 | L-serine deaminase I (NCBI) | compare |
| b0738 | tolR | -1.6 | -2.4 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1575 | dicB | -1.5 | -1.9 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b3617 | kbl | -1.5 | -6.0 | 2-amino-3-ketobutyrate coenzyme A ligase (NCBI) | compare |
| b1818 | manY | -1.5 | -1.4 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b3610 | grxC | -1.5 | -3.9 | glutaredoxin 3 (NCBI) | compare |
| b1048 | mdoG | -1.5 | -4.7 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b1523 | yneG | -1.5 | -1.7 | hypothetical protein (NCBI) | compare |
| b1482 | osmC | -1.5 | -2.2 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b0406 | tgt | -1.5 | -5.8 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b2376 | ypdI | -1.5 | -2.3 | predicted lipoprotein involved in colanic acid biosynthesis (NCBI) | compare |
| b0888 | trxB | -1.5 | -2.6 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b0051 | ksgA | -1.5 | -2.0 | dimethyladenosine transferase (NCBI) | compare |
| b1348 | lar | -1.5 | -1.8 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b0685 | ybfE | -1.5 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b0740 | tolB | -1.5 | -2.6 | translocation protein TolB precursor (NCBI) | compare |
| b3169 | nusA | -1.5 | -2.9 | transcription elongation factor NusA (NCBI) | compare |
| b2414 | cysK | -1.5 | -7.1 | cysteine synthase A, O-acetylserine sulfhydrolase A subunit (NCBI) | compare |
| b3609 | secB | -1.4 | -3.6 | export protein SecB (NCBI) | compare |
| b3162 | deaD | -1.4 | -1.0 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b2570 | rseC | -1.4 | -4.5 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b1594 | dgsA | -1.4 | -3.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4393 | trpR | -1.4 | -4.6 | Trp operon repressor (NCBI) | compare |
| b1556 | b1556 | -1.4 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0908 | aroA | -1.4 | -6.4 | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | compare |
| b0564 | appY | -1.4 | -0.7 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b3469 | zntA | -1.4 | -5.1 | zinc, cobalt and lead efflux system (NCBI) | compare |
| b4180 | rlmB | -1.4 | -5.2 | 23S rRNA (Gm2251)-methyltransferase (NCBI) | compare |
| b2940 | yqgC | -1.4 | -3.7 | hypothetical protein (NCBI) | compare |
| b1503 | ydeR | -1.4 | -2.5 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b4515 | ybgT | -1.4 | -1.4 | hypothetical protein (NCBI) | compare |
| b3924 | fpr | -1.4 | -4.3 | ferredoxin-NADP reductase (NCBI) | compare |
| b4171 | miaA | -1.4 | -2.0 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b2830 | nudH | -1.4 | -0.9 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b0092 | ddlB | -1.4 | -3.5 | D-alanylalanine synthetase (NCBI) | compare |
| b3816 | corA | -1.4 | -6.4 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b0739 | tolA | -1.4 | -1.9 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b0535 | fimZ | -1.3 | -1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3620 | rfaF | -1.3 | -3.7 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b4240 | treB | -1.3 | -7.0 | fused trehalose(maltose)-specific PTS enzyme: IIB component/IIC component (NCBI) | compare |
| b4596 | yciZ | -1.3 | -1.5 | hypothetical protein (RefSeq) | compare |
| b1004 | wrbA | -1.3 | -4.9 | TrpR binding protein WrbA (NCBI) | compare |
| b0706 | ybfD | -1.3 | -1.5 | hypothetical protein (NCBI) | compare |
| b2421 | cysM | -1.3 | -2.8 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b2617 | smpA | -1.3 | -1.8 | small membrane protein A (VIMSS) | compare |
| b3950 | frwB | -1.3 | -2.4 | predicted enzyme IIB component of PTS (NCBI) | compare |
| b1198 | dhaM | -1.3 | -3.5 | fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component (RefSeq) | compare |
| b0937 | ssuE | -1.3 | -1.8 | NAD(P)H-dependent FMN reductase (NCBI) | compare |
| b4685 | yrbN | -1.3 | -2.2 | expressed protein (RefSeq) | compare |
| b1506 | yneL | -1.3 | -1.4 | predicted transcriptional regulator (NCBI) | compare |
| b3933 | ftsN | -1.3 | -7.2 | essential cell division protein (NCBI) | compare |
| b0018 | mokC | -1.3 | -1.0 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b0082 | mraW | -1.3 | -2.4 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1183 | umuD | -1.3 | -1.3 | DNA polymerase V, subunit D (NCBI) | compare |
| b2181 | yejG | -1.3 | -2.6 | hypothetical protein (NCBI) | compare |
| b3868 | glnG | -1.3 | -3.5 | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) | compare |
| b0580 | ybdJ | -1.3 | -1.8 | predicted inner membrane protein (NCBI) | compare |
| b4503 | yafF | -1.3 | -0.6 | no description | compare |
| b4202 | rpsR | -1.3 | -0.8 | 30S ribosomal protein S18 (NCBI) | compare |
| b1823 | cspC | -1.3 | -1.3 | stress protein, member of the CspA-family (NCBI) | compare |
| b4445 | omrB | -1.3 | -1.7 | sRNA down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq (RefSeq) | compare |
| b0741 | pal | -1.3 | -2.6 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b3545 | proK | -1.2 | -1.6 | tRNA-Pro (NCBI) | compare |
| b3631 | rfaG | -1.2 | -8.0 | glucosyltransferase I (NCBI) | compare |
| b0542 | renD | -1.2 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b2016 | yeeZ | -1.2 | -4.6 | predicted epimerase, with NAD(P)-binding Rossmann-fold domain (NCBI) | compare |
| b1478 | adhP | -1.2 | -2.7 | alcohol dehydrogenase (VIMSS) | compare |
| b4579 | yaiX | -1.2 | -3.3 | no description | compare |
| b4413 | sokC | -1.2 | -1.2 | regulatory antisense RNA (NCBI) | compare |
| b1323 | tyrR | -1.2 | -3.6 | DNA-binding transcriptional dual regulator, tyrosine-binding (NCBI) | compare |
| b1192 | ldcA | -1.2 | -3.1 | L,D-carboxypeptidase A (NCBI) | compare |
| b0737 | tolQ | -1.2 | -1.7 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0989 | cspH | -1.2 | -1.7 | stress protein, member of the CspA-family (NCBI) | compare |
| b0736 | ybgC | -1.2 | -2.6 | predicted acyl-CoA thioesterase (NCBI) | compare |
| b1742 | b1742 | -1.2 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0949 | uup | -1.2 | -5.6 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1848 | yebG | -1.2 | -0.8 | conserved protein regulated by LexA (NCBI) | compare |
| b0840 | deoR | -1.2 | -3.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3149 | yraO | -1.2 | -3.7 | DnaA initiator-associating factor for replication initiation (NCBI) | compare |
| b0296 | ykgM | -1.2 | -2.7 | 50S ribosomal protein L31 (NCBI) | compare |
| b4480 | hdfR | -1.2 | -3.5 | transcriptional regulator HdfR (NCBI) | compare |
| b4589 | ylcI | -1.2 | -1.5 | hypothetical protein (RefSeq) | compare |
| b1871 | yecP | -1.1 | -3.1 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b1627 | rsxA | -1.1 | -2.7 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b2479 | gcvR | -1.1 | -3.4 | transcriptional regulation of gcv operon (VIMSS) | compare |
| b1628 | rsxB | -1.1 | -1.8 | electron transport complex protein RnfB (NCBI) | compare |
| b1842 | holE | -1.1 | -1.0 | DNA polymerase III, theta subunit (NCBI) | compare |
| b2314 | dedD | -1.1 | -2.5 | putative lipoprotein (VIMSS) | compare |
| b2229 | b2229 | -1.1 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3649 | rpoZ | -1.1 | -2.0 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b1874 | cutC | -1.1 | -1.4 | copper homeostasis protein (NCBI) | compare |
| b2390 | ypeC | -1.1 | -2.6 | hypothetical protein (NCBI) | compare |
| b1305 | pspB | -1.1 | -1.9 | phage shock protein B (NCBI) | compare |
| b0191 | yaeJ | -1.1 | -2.2 | hypothetical protein (NCBI) | compare |
| b4214 | cysQ | -1.1 | -4.6 | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) | compare |
| b1735 | chbR | -1.1 | -1.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1989 | asnV | -1.1 | -1.5 | tRNA-Asn (NCBI) | compare |
| b2614 | grpE | -1.1 | -1.3 | heat shock protein (NCBI) | compare |
| b2804 | fucU | -1.1 | -1.4 | L-fucose mutarotase (NCBI) | compare |
| b4209 | ytfE | -1.1 | -3.4 | predicted regulator of cell morphogenesis and cell wall metabolism (NCBI) | compare |
| b2156 | lysP | -1.1 | -5.3 | lysine transporter (NCBI) | compare |