Experiment set8IT034 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

C.elegans, mixed culture-2

200 most important genes:

  gene name fitness t score description  
GFF1808 -7.8 -5.4 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF3901 -7.0 -4.1 Phosphomannomutase (EC 5.4.2.8) compare
GFF2881 -6.7 -11.3 WzxE protein compare
GFF3888 -6.4 -4.4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF3890 -5.9 -3.6 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
GFF389 -5.8 -4.0 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
GFF2880 -5.1 -10.1 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF2882 -5.0 -11.6 Lipopolysaccharide biosynthesis protein RffA compare
GFF1634 -4.9 -5.4 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF1750 -4.5 -3.1 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
GFF871 -4.1 -17.1 Putative membrane protein compare
GFF4652 -3.9 -4.5 Tol biopolymer transport system, TolR protein compare
GFF4654 -3.9 -8.6 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF1256 -3.4 -3.3 Chromosome (plasmid) partitioning protein ParA compare
GFF4027 -3.4 -1.7 Flagellar biosynthesis protein FliS compare
GFF3415 -3.2 -8.6 Transcriptional regulatory protein PhoP compare
GFF1716 -3.2 -7.3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF3887 -3.1 -10.9 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
GFF1411 -3.1 -4.6 Diacylglycerol kinase (EC 2.7.1.107) compare
GFF2991 -3.0 -4.0 Tyrosine recombinase XerD compare
GFF392 -3.0 -3.4 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) compare
GFF3712 -2.9 -3.8 Cyclic AMP receptor protein compare
GFF629 -2.9 -2.0 Shikimate kinase I (EC 2.7.1.71) compare
GFF824 -2.9 -3.8 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF87 -2.9 -2.5 C4-type zinc finger protein, DksA/TraR family compare
GFF3414 -2.8 -12.7 Sensor protein PhoQ (EC 2.7.13.3) compare
GFF4655 -2.8 -4.1 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF3667 -2.8 -2.3 Cytidylate kinase (EC 2.7.4.25) compare
GFF1737 -2.8 -4.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
GFF2434 -2.6 -1.3 Iron-sulfur cluster assembly scaffold protein IscU compare
GFF1076 -2.5 -2.4 Aerobic respiration control protein arcA compare
GFF2943 -2.5 -3.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
GFF1303 -2.5 -2.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF4653 -2.5 -3.1 TolA protein compare
GFF4890 -2.4 -6.5 Transport ATP-binding protein CydC compare
GFF1088 -2.4 -1.7 FIG01045785: hypothetical protein compare
GFF2845 -2.3 -3.9 Tail-specific protease precursor (EC 3.4.21.102) compare
GFF2946 -2.3 -4.5 RNA polymerase sigma-54 factor RpoN compare
GFF2213 -2.2 -8.9 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF115 -2.2 -5.7 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF4601 -2.2 -6.7 Phosphoglucomutase (EC 5.4.2.2) compare
GFF2389 -2.2 -2.9 Trk system potassium uptake protein TrkA compare
GFF2808 -2.2 -7.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
GFF2348 -2.2 -5.5 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
GFF4026 -2.1 -3.3 Flagellar biosynthesis protein FliT compare
GFF3248 -2.1 -5.6 Outer membrane protein A precursor compare
GFF230 -2.1 -9.6 Adenylate cyclase (EC 4.6.1.1) compare
GFF2515 -2.1 -1.8 putative outer membrane protein compare
GFF2994 -2.0 -2.5 YgfY COG2938 compare
GFF2840 -2.0 -2.8 Putative inner membrane protein compare
GFF4158 -2.0 -2.6 tmRNA-binding protein SmpB compare
GFF1934 -2.0 -5.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF122 -1.9 -8.7 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF4639 -1.9 -2.6 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) compare
GFF2160 -1.9 -2.6 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11 compare
GFF2047 -1.9 -7.3 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF391 -1.9 -3.1 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
GFF4575 -1.9 -4.4 Magnesium and cobalt efflux protein CorC compare
GFF400 -1.9 -2.4 Glutaredoxin 3 (Grx3) compare
GFF2430 -1.8 -1.8 Ferredoxin, 2Fe-2S compare
GFF4354 -1.8 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF2475 -1.8 -2.7 Ribonuclease III (EC 3.1.26.3) compare
GFF2324 -1.8 -3.9 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF4637 -1.8 -10.6 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) compare
GFF4635 -1.8 -2.3 Succinate dehydrogenase cytochrome b-556 subunit compare
GFF4596 -1.8 -4.0 Ferric uptake regulation protein FUR compare
GFF4600 -1.8 -2.6 SeqA protein, negative modulator of initiation of replication compare
GFF4355 -1.7 -1.9 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF2784 -1.7 -3.0 GTP-binding and nucleic acid-binding protein YchF compare
GFF4636 -1.7 -3.2 Succinate dehydrogenase hydrophobic membrane anchor protein compare
GFF2431 -1.7 -3.4 Chaperone protein HscA compare
GFF121 -1.7 -4.9 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF357 -1.6 -3.5 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF192 -1.6 -7.6 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF2409 -1.6 -4.6 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
GFF1502 -1.6 -6.5 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
GFF1885 -1.6 -6.5 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) compare
GFF1879 -1.6 -9.0 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF4353 -1.5 -3.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF1032 -1.5 -1.8 DNA polymerase III psi subunit (EC 2.7.7.7) compare
GFF2216 -1.5 -7.3 DNA polymerase I (EC 2.7.7.7) compare
GFF390 -1.5 -3.5 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
GFF1888 -1.5 -3.2 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
GFF188 -1.5 -7.2 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) compare
GFF2690 -1.5 -2.0 Peptide transport system permease protein SapC compare
GFF3166 -1.4 -4.0 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase compare
GFF332 -1.4 -2.6 Mg(2+) transport ATPase protein C compare
GFF633 -1.4 -4.2 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF1863 -1.4 -1.5 Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase compare
GFF2481 -1.4 -5.5 hypothetical protein compare
GFF1884 -1.4 -2.1 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF3862 -1.4 -3.8 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF1882 -1.4 -5.4 NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) compare
GFF110 -1.4 -4.5 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF1499 -1.4 -3.1 Ribosome-binding factor A compare
GFF1699 -1.4 -1.6 BarA-associated response regulator UvrY (= GacA = SirA) compare
GFF4634 -1.4 -6.0 Citrate synthase (si) (EC 2.3.3.1) compare
GFF20 -1.4 -5.4 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF1887 -1.3 -7.6 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF2478 -1.3 -2.7 leucine-rich repeat protein compare
GFF2031 -1.3 -1.4 FIG01046611: hypothetical protein compare
GFF276 -1.3 -5.0 Potassium uptake protein TrkH compare
GFF1864 -1.3 -1.6 Polymyxin resistance protein PmrM compare
GFF2469 -1.3 -2.0 Transcriptional regulator, LysR family compare
GFF3228 -1.3 -7.4 Phage tail fibers compare
GFF2973 -1.3 -4.7 Putative cytochrome d ubiquinol oxidase subunit III (EC 1.10.3.-) (Cytochrome bd-I oxidase subunit III) compare
GFF4891 -1.3 -5.7 Transport ATP-binding protein CydD compare
GFF632 -1.3 -4.1 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) compare
GFF1881 -1.3 -6.8 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF2773 -1.3 -5.0 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 compare
GFF3835 -1.3 -1.7 Uncharacterized HTH-type transcriptional regulator YegW compare
GFF158 -1.3 -5.5 Fructose repressor FruR, LacI family compare
GFF630 -1.3 -5.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF2433 -1.2 -3.2 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF3566 -1.2 -1.7 major outer membrane lipoprotein compare
GFF1886 -1.2 -6.6 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF32 -1.2 -1.2 Rho-specific inhibitor of transcription termination (YaeO) compare
GFF3830 -1.2 -1.0 Uncharacterized protein YehA precursor compare
GFF3669 -1.2 -1.9 Integration host factor beta subunit compare
GFF597 -1.2 -1.5 DNA-damage-inducible protein J compare
GFF3227 -1.2 -5.6 Phage tail fiber protein compare
GFF3149 -1.2 -6.9 Type I secretion outer membrane protein, TolC precursor compare
GFF4641 -1.2 -4.1 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) compare
GFF109 -1.2 -3.0 DeoR family transcriptional regulator probably related to glycerate, glycolaldehyde metabolism compare
GFF1848 -1.2 -1.6 FIG074102: hypothetical protein compare
GFF4642 -1.2 -1.3 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
GFF603 -1.2 -2.0 NfuA Fe-S protein maturation compare
GFF4647 -1.2 -3.2 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF1090 -1.2 -3.6 Chaperone protein DnaJ compare
GFF3230 -1.2 -1.9 Transposase compare
GFF4638 -1.2 -5.6 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) compare
GFF4865 -1.2 -4.9 Glycine cleavage system transcriptional activator GcvA compare
GFF267 -1.2 -2.2 Transcriptional activator RfaH compare
GFF2173 -1.1 -4.5 Chromosomal replication initiator protein DnaA compare
GFF2477 -1.1 -3.5 Translation elongation factor LepA compare
GFF3377 -1.1 -4.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
GFF3370 -1.1 -2.0 COG1399 protein, clustered with ribosomal protein L32p compare
GFF778 -1.1 -1.7 Mobile element protein compare
GFF635 -1.1 -4.1 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
GFF355 -1.1 -2.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
GFF1890 -1.1 -7.5 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF1889 -1.1 -7.1 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF2149 -1.1 -5.0 Malate dehydrogenase (EC 1.1.1.37) compare
GFF156 -1.1 -1.0 rRNA small subunit methyltransferase H compare
GFF3231 -1.1 -7.0 Gifsy-2 prophage protein compare
GFF3528 -1.0 -3.4 Integration host factor alpha subunit compare
GFF3142 -1.0 -1.6 FIG00896075: hypothetical protein compare
GFF55 -1.0 -5.4 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF1880 -1.0 -4.5 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
GFF1221 -1.0 -1.3 hypothetical protein compare
GFF1264 -1.0 -1.5 putative cytoplasmic protein compare
GFF2349 -1.0 -3.0 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
GFF825 -1.0 -1.9 RNA-binding protein Hfq compare
GFF2954 -1.0 -6.4 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) compare
GFF1900 -1.0 -4.0 Acetate kinase (EC 2.7.2.1) compare
GFF4646 -1.0 -5.3 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF1921 -1.0 -1.8 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) compare
GFF2646 -1.0 -2.9 FIG01046477: hypothetical protein compare
GFF2692 -1.0 -3.3 Peptide transport system ATP-binding protein SapF compare
GFF522 -0.9 -4.3 Low-affinity inorganic phosphate transporter compare
GFF236 -0.9 -0.8 FIG00545237: hypothetical protein compare
GFF3229 -0.9 -2.5 Secreted effector protein compare
GFF3502 -0.9 -1.0 PTS system, cellobiose-specific IIB component (EC 2.7.1.69) compare
GFF4585 -0.9 -5.0 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
GFF1936 -0.9 -5.2 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) compare
GFF3664 -0.9 -5.7 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF2627 -0.9 -1.7 putative amino acid ABC transporter compare
GFF189 -0.9 -4.2 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF492 -0.9 -3.1 Endoglucanase precursor (EC 3.2.1.4) compare
GFF2719 -0.9 -3.5 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
GFF3139 -0.9 -5.5 Sensory histidine kinase QseC compare
GFF1734 -0.9 -3.7 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
GFF4182 -0.9 -4.0 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
GFF2636 -0.9 -2.5 Uncharacterized protein ynbE; probable lipoprotein STY1424 compare
GFF2895 -0.9 -0.9 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
GFF1005 -0.9 -2.1 FIG00638610: hypothetical protein compare
GFF1883 -0.9 -4.2 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF1503 -0.8 -3.0 Lipoprotein nlpI precursor compare
GFF817 -0.8 -4.2 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) compare
GFF1366 -0.8 -1.3 putative cytoplasmic protein compare
GFF2806 -0.8 -2.2 Transcriptional regulator for fatty acid degradation FadR, GntR family compare
GFF1736 -0.8 -1.0 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
GFF380 -0.8 -5.0 UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-) compare
GFF2415 -0.8 -2.0 Nucleoside diphosphate kinase (EC 2.7.4.6) compare
GFF3518 -0.8 -1.1 putative outer membrane protein compare
GFF2992 -0.8 -5.5 Flavodoxin 2 compare
GFF2656 -0.8 -3.3 Fumarate and nitrate reduction regulatory protein compare
GFF1408 -0.8 -2.4 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
GFF2934 -0.8 -2.8 YrbA protein compare
GFF2948 -0.8 -3.0 PTS system nitrogen-specific IIA component, PtsN compare
GFF2968 -0.8 -2.6 Stringent starvation protein A compare
GFF1735 -0.8 -3.2 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
GFF828 -0.8 -2.6 HflC protein compare
GFF1747 -0.8 -0.8 putative inner membrane protein compare
GFF1641 -0.8 -1.2 hypothetical protein compare
GFF4358 -0.8 -1.2 FIG01200701: possible membrane protein compare
GFF661 -0.8 -4.6 6-phosphogluconolactonase (EC 3.1.1.31) compare
GFF1312 -0.8 -1.7 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 compare
GFF792 -0.8 -1.1 hypothetical protein compare
GFF214 -0.8 -4.1 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in micoeukaryotes experiments

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 across organisms