Experiment set8IT033 for Escherichia coli BW25113
LB Aerobic with Doxycycline hyclate 0.00000625 mM
Group: stressMedia: LB + Doxycycline hyclate (6.25E-03 mM)
Culturing: Keio_ML9a, 96 deep-well microplate; Multitron, Aerobic, at 37 (C), shaken=750 rpm
By: Hans_Hualan on 7/20/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 6 genes in this experiment
For stress Doxycycline hyclate in Escherichia coli BW25113
For stress Doxycycline hyclate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Glycerolipid and Glycerophospholipid Metabolism in Bacteria | 1 |
| KDO2-Lipid A biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Aminophosphonate metabolism
- High-mannose type N-glycan biosynthesis
- Nucleotide sugars metabolism
- Glycerophospholipid metabolism
- Sphingolipid metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| di-trans,poly-cis-undecaprenyl phosphate biosynthesis | 2 | 2 | 1 |
| cardiolipin biosynthesis II | 3 | 3 | 1 |
| cardiolipin biosynthesis I | 3 | 3 | 1 |
| cardiolipin and phosphatidylethanolamine biosynthesis (Xanthomonas) | 4 | 3 | 1 |
| peptidoglycan maturation (meso-diaminopimelate containing) | 12 | 6 | 3 |
| polyisoprenoid biosynthesis (E. coli) | 5 | 5 | 1 |
| superpathway of cardiolipin biosynthesis (bacteria) | 13 | 11 | 2 |
| superpathway of phospholipid biosynthesis III (E. coli) | 12 | 12 | 1 |