Experiment set8IT032 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

Dictyostellum sp.mixed culture-2

200 most important genes:

  gene name fitness t score description  
GFF2881 -6.7 -11.2 WzxE protein compare
GFF3888 -6.5 -4.5 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF3890 -6.0 -3.5 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
GFF1634 -5.8 -5.6 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF1808 -5.6 -4.2 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF3712 -4.9 -4.8 Cyclic AMP receptor protein compare
GFF389 -4.9 -4.1 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
GFF4652 -4.8 -5.2 Tol biopolymer transport system, TolR protein compare
GFF871 -4.8 -11.6 Putative membrane protein compare
GFF4654 -4.7 -8.5 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF2880 -4.7 -8.1 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF2882 -4.7 -11.3 Lipopolysaccharide biosynthesis protein RffA compare
GFF2991 -4.5 -4.3 Tyrosine recombinase XerD compare
GFF1303 -3.9 -3.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF3901 -3.8 -3.7 Phosphomannomutase (EC 5.4.2.8) compare
GFF87 -3.7 -2.5 C4-type zinc finger protein, DksA/TraR family compare
GFF4655 -3.6 -4.6 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF3887 -3.6 -10.2 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
GFF4653 -3.2 -5.3 TolA protein compare
GFF4354 -3.2 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF3667 -2.9 -2.4 Cytidylate kinase (EC 2.7.4.25) compare
GFF1256 -2.9 -4.4 Chromosome (plasmid) partitioning protein ParA compare
GFF4601 -2.9 -9.8 Phosphoglucomutase (EC 5.4.2.2) compare
GFF824 -2.8 -3.2 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF1864 -2.8 -2.1 Polymyxin resistance protein PmrM compare
GFF1716 -2.7 -6.6 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF2389 -2.7 -3.9 Trk system potassium uptake protein TrkA compare
GFF4639 -2.7 -3.5 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) compare
GFF1750 -2.6 -5.1 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
GFF4890 -2.6 -6.9 Transport ATP-binding protein CydC compare
GFF1411 -2.5 -5.2 Diacylglycerol kinase (EC 2.7.1.107) compare
GFF2213 -2.5 -10.5 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF3414 -2.4 -12.3 Sensor protein PhoQ (EC 2.7.13.3) compare
GFF4891 -2.4 -7.1 Transport ATP-binding protein CydD compare
GFF1076 -2.4 -2.8 Aerobic respiration control protein arcA compare
GFF3415 -2.4 -6.2 Transcriptional regulatory protein PhoP compare
GFF4600 -2.4 -5.5 SeqA protein, negative modulator of initiation of replication compare
GFF3166 -2.4 -6.2 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase compare
GFF115 -2.4 -4.2 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF4635 -2.3 -2.5 Succinate dehydrogenase cytochrome b-556 subunit compare
GFF230 -2.3 -10.4 Adenylate cyclase (EC 4.6.1.1) compare
GFF2348 -2.2 -5.8 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
GFF121 -2.2 -5.8 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF3230 -2.2 -2.6 Transposase compare
GFF1737 -2.2 -5.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
GFF4575 -2.2 -5.6 Magnesium and cobalt efflux protein CorC compare
GFF2845 -2.2 -6.3 Tail-specific protease precursor (EC 3.4.21.102) compare
GFF2431 -2.2 -3.2 Chaperone protein HscA compare
GFF2478 -2.1 -3.3 leucine-rich repeat protein compare
GFF4642 -2.1 -2.2 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
GFF2808 -2.1 -11.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
GFF1884 -2.1 -2.5 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF4636 -2.1 -7.7 Succinate dehydrogenase hydrophobic membrane anchor protein compare
GFF3248 -2.1 -3.6 Outer membrane protein A precursor compare
GFF1090 -2.1 -5.7 Chaperone protein DnaJ compare
GFF4596 -2.1 -3.0 Ferric uptake regulation protein FUR compare
GFF4355 -2.0 -1.2 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF3566 -2.0 -4.6 major outer membrane lipoprotein compare
GFF192 -2.0 -7.3 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF2943 -2.0 -2.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
GFF122 -2.0 -8.6 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF4646 -1.9 -7.1 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF2160 -1.9 -3.3 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11 compare
GFF2475 -1.9 -2.9 Ribonuclease III (EC 3.1.26.3) compare
GFF400 -1.9 -2.4 Glutaredoxin 3 (Grx3) compare
GFF2324 -1.9 -4.3 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF603 -1.8 -3.9 NfuA Fe-S protein maturation compare
GFF2690 -1.8 -2.2 Peptide transport system permease protein SapC compare
GFF4027 -1.8 -1.6 Flagellar biosynthesis protein FliS compare
GFF4637 -1.8 -10.7 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) compare
GFF4353 -1.8 -3.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF4647 -1.8 -5.3 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF597 -1.8 -1.7 DNA-damage-inducible protein J compare
GFF391 -1.7 -1.9 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
GFF2430 -1.7 -1.7 Ferredoxin, 2Fe-2S compare
GFF1502 -1.7 -6.7 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
GFF1088 -1.7 -1.4 FIG01045785: hypothetical protein compare
GFF357 -1.6 -2.5 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF2047 -1.6 -5.4 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF2031 -1.6 -1.5 FIG01046611: hypothetical protein compare
GFF1934 -1.6 -4.4 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF236 -1.6 -1.2 FIG00545237: hypothetical protein compare
GFF2773 -1.6 -3.4 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 compare
GFF633 -1.6 -3.9 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF1863 -1.6 -1.5 Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase compare
GFF2433 -1.5 -5.3 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF2434 -1.5 -1.0 Iron-sulfur cluster assembly scaffold protein IscU compare
GFF2946 -1.5 -4.2 RNA polymerase sigma-54 factor RpoN compare
GFF4641 -1.5 -3.0 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) compare
GFF390 -1.5 -3.4 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
GFF1885 -1.5 -5.5 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) compare
GFF110 -1.5 -4.0 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF276 -1.4 -6.0 Potassium uptake protein TrkH compare
GFF2840 -1.4 -2.4 Putative inner membrane protein compare
GFF4638 -1.4 -3.8 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) compare
GFF2216 -1.4 -7.4 DNA polymerase I (EC 2.7.7.7) compare
GFF109 -1.4 -2.6 DeoR family transcriptional regulator probably related to glycerate, glycolaldehyde metabolism compare
GFF1891 -1.4 -2.1 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
GFF2409 -1.4 -4.8 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
GFF2481 -1.4 -5.4 hypothetical protein compare
GFF3228 -1.3 -7.1 Phage tail fibers compare
GFF1879 -1.3 -7.1 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF3149 -1.3 -7.4 Type I secretion outer membrane protein, TolC precursor compare
GFF4270 -1.3 -1.3 FIG00637869: hypothetical protein compare
GFF1881 -1.3 -6.2 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF2349 -1.3 -3.5 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
GFF55 -1.3 -6.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF1921 -1.3 -1.8 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) compare
GFF3370 -1.3 -2.4 COG1399 protein, clustered with ribosomal protein L32p compare
GFF4158 -1.3 -1.2 tmRNA-binding protein SmpB compare
GFF20 -1.2 -4.5 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF1880 -1.2 -6.5 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
GFF806 -1.2 -6.0 Phage tail completion protein compare
GFF1499 -1.2 -2.8 Ribosome-binding factor A compare
GFF1735 -1.2 -3.9 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
GFF2915 -1.2 -2.8 Preprotein translocase subunit SecG (TC 3.A.5.1.1) compare
GFF1887 -1.2 -7.1 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF816 -1.2 -2.0 Phage tail assembly protein I compare
GFF332 -1.2 -3.3 Mg(2+) transport ATPase protein C compare
GFF3162 -1.2 -1.5 glycogen synthesis protein GlgS compare
GFF2173 -1.2 -2.6 Chromosomal replication initiator protein DnaA compare
GFF2719 -1.2 -4.9 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
GFF1719 -1.1 -2.7 ATP synthase protein I compare
GFF3533 -1.1 -2.0 FIG00638687: hypothetical protein compare
GFF492 -1.1 -3.1 Endoglucanase precursor (EC 3.2.1.4) compare
GFF3733 -1.1 -2.4 Phage tail fiber protein compare
GFF1882 -1.1 -4.4 NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) compare
GFF158 -1.1 -5.7 Fructose repressor FruR, LacI family compare
GFF1889 -1.1 -8.3 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF1312 -1.1 -2.4 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 compare
GFF1886 -1.1 -5.4 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF1901 -1.1 -4.9 Phosphate acetyltransferase (EC 2.3.1.8) compare
GFF3227 -1.1 -8.0 Phage tail fiber protein compare
GFF3229 -1.1 -2.1 Secreted effector protein compare
GFF2968 -1.1 -3.4 Stringent starvation protein A compare
GFF3664 -1.1 -7.8 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF416 -1.1 -6.2 Mannitol operon repressor compare
GFF4584 -1.1 -5.3 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family compare
GFF1883 -1.1 -4.8 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF3528 -1.1 -2.4 Integration host factor alpha subunit compare
GFF3722 -1.1 -1.4 Putative cytoplasmic protein ,probably associated with Glutathione-regulated potassium-efflux compare
GFF4087 -1.1 -1.6 Mobile element protein compare
GFF3231 -1.1 -5.7 Gifsy-2 prophage protein compare
GFF787 -1.0 -1.9 FIG00642546: hypothetical protein compare
GFF629 -1.0 -1.3 Shikimate kinase I (EC 2.7.1.71) compare
GFF392 -1.0 -1.9 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) compare
GFF1890 -1.0 -6.8 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF188 -1.0 -3.8 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) compare
GFF4350 -1.0 -0.9 hypothetical protein compare
GFF1685 -1.0 -1.4 FIG01045540: hypothetical protein compare
GFF635 -1.0 -4.5 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
GFF2692 -1.0 -3.0 Peptide transport system ATP-binding protein SapF compare
GFF522 -1.0 -4.1 Low-affinity inorganic phosphate transporter compare
GFF4314 -1.0 -0.9 hypothetical protein compare
GFF2392 -1.0 -1.4 Peptide deformylase (EC 3.5.1.88) compare
GFF269 -1.0 -2.4 NAD(P)H-flavin reductase (EC 1.5.1.29) (EC 1.16.1.3) compare
GFF190 -1.0 -2.5 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF2104 -0.9 -1.6 ATP-dependent RNA helicase SrmB compare
GFF355 -0.9 -2.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
GFF632 -0.9 -4.7 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) compare
GFF4305 -0.9 -2.4 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
GFF1408 -0.9 -3.6 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
GFF1900 -0.9 -4.0 Acetate kinase (EC 2.7.2.1) compare
GFF3644 -0.9 -2.8 Electron transport complex protein RnfD compare
GFF2200 -0.9 -3.5 Phage CI-like repressor compare
GFF1734 -0.9 -3.0 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
GFF3862 -0.9 -3.4 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF3139 -0.9 -4.1 Sensory histidine kinase QseC compare
GFF4644 -0.9 -1.8 hypothetical protein compare
GFF2948 -0.8 -2.3 PTS system nitrogen-specific IIA component, PtsN compare
GFF4234 -0.8 -1.6 Possible transmembrane regulator compare
GFF1888 -0.8 -1.7 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
GFF2149 -0.8 -3.6 Malate dehydrogenase (EC 1.1.1.37) compare
GFF536 -0.8 -5.9 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
GFF4892 -0.8 -3.1 Thioredoxin reductase (EC 1.8.1.9) compare
GFF3342 -0.8 -4.0 Dihydroorotase (EC 3.5.2.3) compare
GFF3548 -0.8 -2.8 3-dehydroquinate dehydratase I (EC 4.2.1.10) compare
GFF2312 -0.8 -4.8 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) compare
GFF4634 -0.8 -4.9 Citrate synthase (si) (EC 2.3.3.1) compare
GFF2223 -0.8 -3.8 GTP-binding protein TypA/BipA compare
GFF2973 -0.8 -4.1 Putative cytochrome d ubiquinol oxidase subunit III (EC 1.10.3.-) (Cytochrome bd-I oxidase subunit III) compare
GFF2758 -0.8 -1.1 FIG01045187: hypothetical protein compare
GFF381 -0.8 -4.6 Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase compare
GFF1659 -0.8 -2.7 Flagellar protein FlhE compare
GFF2553 -0.8 -1.1 Osmotically inducible protein C compare
GFF2784 -0.8 -2.0 GTP-binding and nucleic acid-binding protein YchF compare
GFF2656 -0.8 -2.4 Fumarate and nitrate reduction regulatory protein compare
GFF3835 -0.8 -1.5 Uncharacterized HTH-type transcriptional regulator YegW compare
GFF803 -0.8 -3.7 Prophage Clp protease-like protein compare
GFF4205 -0.8 -1.0 hypothetical protein compare
GFF4095 -0.8 -1.4 LysR-family transcriptional regulator SinR compare
GFF4585 -0.8 -3.9 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
GFF1503 -0.8 -2.8 Lipoprotein nlpI precursor compare
GFF2454 -0.8 -3.3 Nitrogen regulatory protein P-II compare
GFF2679 -0.8 -3.6 Transcriptional repressor protein TyrR compare
GFF4865 -0.8 -3.3 Glycine cleavage system transcriptional activator GcvA compare
GFF2387 -0.8 -1.6 transcriptional regulator, MerR family compare
GFF817 -0.7 -4.6 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) compare
GFF4650 -0.7 -0.9 4-hydroxybenzoyl-CoA thioesterase family active site compare
GFF366 -0.7 -2.5 Ribonuclease PH (EC 2.7.7.56) compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in micoeukaryotes experiments

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 across organisms