Experiment set8IT030 for Escherichia coli BW25113
LB Aerobic with Novobiocin sodium salt 0.0000625 mM
Group: stressMedia: LB + Novobiocin sodium salt (6.25E-02 mM)
Culturing: Keio_ML9a, 96 deep-well microplate; Multitron, Aerobic, at 37 (C), shaken=750 rpm
By: Hans_Hualan on 7/20/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 11 genes in this experiment
For stress Novobiocin sodium salt in Escherichia coli BW25113
For stress Novobiocin sodium salt across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Cysteine Biosynthesis | 2 |
| Transcription initiation, bacterial sigma factors | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Ubiquinone and menaquinone biosynthesis
- Cysteine metabolism
- Histidine metabolism
- Tyrosine metabolism
- Tryptophan metabolism
- Benzoxazinone biosynthesis
- Selenoamino acid metabolism
- Naphthalene and anthracene degradation
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Sulfur metabolism
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of alkaloids derived from shikimate pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-cysteine biosynthesis I | 2 | 2 | 1 |
| di-trans,poly-cis-undecaprenyl phosphate biosynthesis | 2 | 2 | 1 |
| L-cysteine biosynthesis VII (from S-sulfo-L-cysteine) | 4 | 3 | 1 |
| polyisoprenoid biosynthesis (E. coli) | 5 | 5 | 1 |
| seleno-amino acid biosynthesis (plants) | 5 | 3 | 1 |
| hydrogen sulfide biosynthesis II (mammalian) | 6 | 1 | 1 |
| superpathway of sulfate assimilation and cysteine biosynthesis | 9 | 9 | 1 |
| superpathway of seleno-compound metabolism | 19 | 6 | 1 |