Experiment set8IT018 for Pseudomonas simiae WCS417

Compare to:

LB 0.5x in EcoFAB_3.5mL

200 most important genes:

  gene name fitness t score description  
PS417_20985 -6.0 -4.1 porin compare
PS417_24155 -3.5 -5.7 ATP-binding protein compare
PS417_23770 -3.0 -3.4 exodeoxyribonuclease V subunit alpha compare
PS417_27245 -3.0 -4.4 aminotransferase DegT compare
PS417_19805 -2.9 -3.3 flagellar M-ring protein FliF compare
PS417_23950 -2.7 -4.1 polynucleotide phosphorylase/polyadenylase compare
PS417_08125 -2.7 -1.5 prephenate dehydratase compare
PS417_19755 -2.5 -2.8 flagellar motor switch protein FliM compare
PS417_08155 -2.5 -2.8 integration host factor subunit beta compare
PS417_19800 -2.3 -3.4 flagellar motor switch protein FliG compare
PS417_19850 -2.3 -10.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_04650 -2.2 -2.9 D-alanine--D-alanine ligase compare
PS417_21565 -2.2 -4.3 flagellar basal body rod protein FlgC compare
PS417_19790 -2.2 -4.0 ATP synthase compare
PS417_27795 -2.1 -1.2 orotate phosphoribosyltransferase compare
PS417_19835 -2.1 -1.7 flagellar biosynthesis protein FliS compare
PS417_19860 -2.1 -12.8 flagellar hook protein FlgL compare
PS417_21480 -2.0 -2.6 23S rRNA pseudouridylate synthase compare
PS417_06375 -1.9 -1.3 deoxycytidine triphosphate deaminase compare
PS417_19840 -1.8 -9.1 flagellar cap protein FliD compare
PS417_19675 -1.8 -4.7 chemotaxis protein CheY compare
PS417_04380 -1.8 -1.2 ABC transporter permease compare
PS417_17240 -1.8 -4.3 trigger factor compare
PS417_04375 -1.7 -2.7 ABC transporter ATP-binding protein compare
PS417_02280 -1.7 -1.9 GlcNAc-PI de-N-acetylase compare
PS417_19765 -1.7 -7.9 flagellar hook-length control protein compare
PS417_26730 -1.7 -0.9 pyrroline-5-carboxylate reductase compare
PS417_19865 -1.7 -11.0 flagellar hook protein FlgK compare
PS417_24615 -1.6 -1.6 hypothetical protein compare
PS417_19725 -1.6 -3.6 flagellar biosynthesis protein FlhB compare
PS417_21570 -1.6 -6.6 flagellar basal body rod protein FlgB compare
PS417_19745 -1.6 -5.7 flagellar assembly protein FliO compare
PS417_21630 -1.6 -3.1 magnesium transporter compare
PS417_14065 -1.6 -4.8 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_08435 -1.5 -2.8 pilus assembly protein PilZ compare
PS417_05985 -1.5 -2.3 chemotaxis protein CheY compare
PS417_19795 -1.5 -9.1 flagellar assembly protein FliH compare
PS417_22520 -1.5 -2.4 histidine kinase compare
PS417_27800 -1.4 -5.0 exodeoxyribonuclease III compare
PS417_19880 -1.4 -6.8 flagellar basal body L-ring protein compare
PS417_19740 -1.4 -3.6 flagellar biosynthesis protein flip compare
PS417_21595 -1.4 -2.2 flagellar biosynthesis protein FlgN compare
PS417_02210 -1.4 -6.4 diguanylate cyclase compare
PS417_06680 -1.4 -7.3 nuclease PIN compare
PS417_21555 -1.3 -7.3 flagellar hook protein FlgE compare
PS417_19825 -1.3 -8.1 ATPase AAA compare
PS417_19710 -1.3 -6.9 flagellar biosynthesis protein FlhA compare
PS417_19730 -1.3 -2.8 flagellar biosynthesis protein FliR compare
PS417_24675 -1.3 -2.1 lipoyl synthase compare
PS417_22565 -1.3 -1.2 formyltetrahydrofolate deformylase compare
PS417_26605 -1.3 -1.4 malonate decarboxylase subunit beta compare
PS417_08135 -1.3 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20700 -1.2 -9.1 cbb3-type cytochrome c oxidase subunit I compare
PS417_20705 -1.2 -3.6 cbb3-type cytochrome c oxidase subunit II compare
PS417_19275 -1.2 -1.3 hypothetical protein compare
PS417_12355 -1.2 -1.2 magnesium chelatase compare
PS417_23775 -1.2 -1.8 exodeoxyribonuclease V subunit beta compare
PS417_09210 -1.2 -1.8 TetR family transcriptional regulator compare
PS417_20715 -1.2 -2.5 cytochrome Cbb3 compare
PS417_21585 -1.2 -5.4 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19735 -1.2 -4.0 flagellar biosynthesis protein FliQ compare
PS417_17780 -1.2 -1.2 Ais protein compare
PS417_03560 -1.2 -2.1 GTP-binding protein compare
PS417_20755 -1.2 -4.0 membrane protein compare
PS417_26850 -1.2 -1.2 twin-arginine translocation pathway signal protein compare
PS417_04585 -1.2 -2.1 hypothetical protein compare
PS417_23755 -1.2 -2.6 membrane protein compare
PS417_25155 -1.1 -1.6 hypothetical protein compare
PS417_06370 -1.1 -2.0 cold-shock protein compare
PS417_09300 -1.1 -1.7 peptidylprolyl isomerase compare
PS417_02555 -1.1 -7.8 exoribonuclease R compare
PS417_02560 -1.1 -2.0 23S rRNA methyltransferase compare
PS417_24710 -1.1 -4.3 lipoprotein compare
PS417_19695 -1.1 -4.4 flagellar biosynthesis sigma factor compare
PS417_24840 -1.1 -1.7 hypothetical protein compare
PS417_20775 -1.1 -4.1 coproporphyrinogen III oxidase compare
PS417_10060 -1.0 -2.2 hypothetical protein compare
PS417_23390 -1.0 -5.5 ubiquinol oxidase subunit II compare
PS417_26990 -1.0 -1.0 RNA pyrophosphohydrolase compare
PS417_27870 -1.0 -2.2 ATP-dependent DNA helicase RecG compare
PS417_20785 -1.0 -5.3 transcriptional regulator compare
PS417_14980 -1.0 -1.0 universal stress protein UspA compare
PS417_07795 -1.0 -1.7 hypothetical protein compare
PS417_20610 -1.0 -1.3 hypothetical protein compare
PS417_02225 -1.0 -2.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_07710 -1.0 -5.3 membrane protein compare
PS417_23385 -1.0 -4.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_27485 -1.0 -2.7 hypothetical protein compare
PS417_15820 -1.0 -1.4 universal stress protein UspA compare
PS417_11510 -1.0 -1.2 AraC family transcriptional regulator compare
PS417_19650 -1.0 -2.4 chemotaxis protein CheW compare
PS417_22050 -1.0 -3.4 ribonuclease BN compare
PS417_26085 -1.0 -2.5 peptidase compare
PS417_20205 -0.9 -2.3 LysR family transcriptional regulator compare
PS417_06540 -0.9 -1.2 membrane protein compare
PS417_01750 -0.9 -1.9 histidine ammonia-lyase compare
PS417_24370 -0.9 -0.8 (2Fe-2S)-binding protein compare
PS417_21575 -0.9 -3.0 chemotaxis protein compare
PS417_09325 -0.9 -3.8 peptidase S41 compare
PS417_18860 -0.9 -4.5 transcriptional regulator compare
PS417_04365 -0.9 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_14075 -0.9 -1.3 hypothetical protein compare
PS417_14295 -0.9 -1.7 AraC family transcriptional regulator compare
PS417_02765 -0.9 -1.3 phosphate starvation-inducible protein PsiF compare
PS417_21840 -0.9 -3.2 chemotaxis protein compare
PS417_19660 -0.9 -3.3 cobalamin biosynthesis protein CobQ compare
PS417_12520 -0.9 -2.0 hypothetical protein compare
PS417_21430 -0.9 -1.6 3-oxoacyl-ACP synthase compare
PS417_01030 -0.9 -0.9 glutamine ABC transporter substrate-binding protein compare
PS417_09915 -0.9 -0.9 hypothetical protein compare
PS417_06335 -0.9 -1.6 S-formylglutathione hydrolase compare
PS417_16400 -0.8 -1.7 NAD(P)H-quinone oxidoreductase compare
PS417_22450 -0.8 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_17215 -0.8 -2.2 peptidylprolyl isomerase compare
PS417_13620 -0.8 -1.4 thermostable hemolysin compare
PS417_17650 -0.8 -2.0 proteinase compare
PS417_27195 -0.8 -1.1 N-acetylglutamate synthase compare
PS417_07865 -0.8 -1.3 hypothetical protein compare
PS417_05695 -0.8 -3.6 transcriptional regulator compare
PS417_23500 -0.8 -3.4 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
PS417_16195 -0.8 -0.9 AraC family transcriptional regulator compare
PS417_03260 -0.8 -1.4 5S ribosomal RNA compare
PS417_19350 -0.8 -2.1 GTP cyclohydrolase compare
PS417_11020 -0.8 -2.1 L-arabinolactonase (EC 3.1.1.15) (from data) compare
PS417_02975 -0.8 -2.0 3-dehydroquinate dehydratase compare
PS417_18310 -0.8 -1.5 hypothetical protein compare
PS417_10095 -0.8 -1.7 hypothetical protein compare
PS417_02485 -0.8 -3.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_06685 -0.8 -0.7 beta-ketoadipyl CoA thiolase compare
PS417_09330 -0.8 -2.1 NAD(P)H-quinone oxidoreductase compare
PS417_16815 -0.8 -2.1 acyl-CoA dehydrogenase compare
PS417_06895 -0.8 -1.9 DNA-binding protein compare
PS417_06880 -0.8 -3.3 RNA polymerase sigma factor compare
PS417_06175 -0.8 -2.7 cysteine sulfinate desulfinase compare
PS417_26050 -0.8 -2.4 response regulator compare
PS417_24745 -0.7 -1.7 gamma-glutamyl phosphate reductase compare
PS417_01915 -0.7 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_27065 -0.7 -2.5 hypothetical protein compare
PS417_12280 -0.7 -1.5 MerR family transcriptional regulator compare
PS417_01415 -0.7 -4.0 glycosyl transferase family 1 compare
PS417_23160 -0.7 -1.5 50S rRNA methyltransferase compare
PS417_04915 -0.7 -1.0 glutamine ABC transporter ATP-binding protein compare
PS417_27705 -0.7 -1.1 amino acid dehydrogenase compare
PS417_01950 -0.7 -2.0 malate dehydrogenase compare
PS417_13205 -0.7 -1.1 isochorismate-pyruvate lyase compare
PS417_21560 -0.7 -2.6 flagellar basal body rod modification protein FlgD compare
PS417_10220 -0.7 -2.4 hypothetical protein compare
PS417_06620 -0.7 -1.5 hypothetical protein compare
PS417_25390 -0.7 -2.6 MFS transporter compare
PS417_17610 -0.7 -0.7 AsnC family transcriptional regulator compare
PS417_10765 -0.7 -2.6 hypothetical protein compare
PS417_26335 -0.7 -1.4 BetI family transcriptional regulator compare
PS417_06845 -0.7 -1.1 lipoprotein compare
PS417_05730 -0.7 -3.4 tail protein compare
PS417_15770 -0.7 -1.0 pyridoxine 5'-phosphate oxidase compare
PS417_06165 -0.7 -2.3 thiamine biosynthesis protein ThiF compare
PS417_11760 -0.7 -1.6 Fis family transcriptional regulator compare
PS417_12595 -0.7 -1.0 transcriptional regulator compare
PS417_02385 -0.7 -0.7 esterase compare
PS417_19830 -0.7 -1.6 flagellar assembly protein FliT compare
PS417_15455 -0.7 -2.7 ABC transporter substrate-binding protein compare
PS417_04590 -0.7 -3.0 methyltransferase compare
PS417_01850 -0.7 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23135 -0.7 -1.3 GTP-binding protein compare
PS417_02175 -0.7 -2.4 transcriptional regulator compare
PS417_17705 -0.7 -2.2 LacI family transcriptional regulator compare
PS417_27170 -0.7 -2.4 ABC transporter substrate-binding protein compare
PS417_18140 -0.7 -1.8 hypothetical protein compare
PS417_03685 -0.7 -2.4 FAD-dependent oxidoreductase compare
PS417_28040 -0.7 -2.8 histidine kinase compare
PS417_12110 -0.7 -1.2 ATP-binding protein compare
PS417_16085 -0.7 -1.8 LysR family transcriptional regulator compare
PS417_10715 -0.7 -1.9 Cro/Cl family transcriptional regulator compare
PS417_19655 -0.7 -2.3 chemotaxis protein CheW compare
PS417_11380 -0.7 -1.6 peptidylprolyl isomerase compare
PS417_03200 -0.7 -1.8 ArsR family transcriptional regulator compare
PS417_24500 -0.7 -2.4 DEAD/DEAH box helicase compare
PS417_17070 -0.7 -1.0 RNA polymerase subunit sigma-24 compare
PS417_19690 -0.7 -2.5 histidine kinase compare
PS417_13885 -0.7 -1.1 chemotaxis protein CheY compare
PS417_01375 -0.7 -2.0 hypothetical protein compare
PS417_03300 -0.7 -2.0 alanine acetyltransferase compare
PS417_23855 -0.7 -0.8 ABC transporter substrate-binding protein compare
PS417_24230 -0.7 -3.6 ATP-dependent protease compare
PS417_06145 -0.7 -0.7 hypothetical protein compare
PS417_01620 -0.7 -1.1 preprotein translocase subunit SecB compare
PS417_11705 -0.7 -3.5 cyclic peptide transporter compare
PS417_20080 -0.7 -1.2 peptidase P60 compare
PS417_21390 -0.7 -3.2 hypothetical protein compare
PS417_14265 -0.7 -3.6 phosphate ABC transporter permease compare
PS417_11820 -0.6 -1.2 histidine kinase compare
PS417_03655 -0.6 -1.9 short-chain dehydrogenase compare
PS417_00810 -0.6 -1.8 RNA polymerase sigma factor compare
PS417_13800 -0.6 -1.4 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_18475 -0.6 -2.3 Pyrrolidone-carboxylate peptidase compare
PS417_13580 -0.6 -0.9 AraC family transcriptional regulator compare
PS417_27515 -0.6 -2.3 heme biosynthesis protein HemY compare
PS417_08090 -0.6 -0.5 3-oxoacyl-ACP reductase compare
PS417_23910 -0.6 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_12735 -0.6 -1.2 peroxidase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in ecofab experiments