Experiment set8IT017 for Pseudomonas simiae WCS417

Compare to:

LB in EcoFAB_3.5mL

200 most important genes:

  gene name fitness t score description  
PS417_08125 -4.6 -1.4 prephenate dehydratase compare
PS417_20715 -4.1 -4.8 cytochrome Cbb3 compare
PS417_19835 -3.4 -2.1 flagellar biosynthesis protein FliS compare
PS417_24155 -3.4 -5.2 ATP-binding protein compare
PS417_21480 -3.3 -2.8 23S rRNA pseudouridylate synthase compare
PS417_23770 -3.1 -3.6 exodeoxyribonuclease V subunit alpha compare
PS417_22565 -3.0 -1.6 formyltetrahydrofolate deformylase compare
PS417_12855 -2.8 -5.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26850 -2.4 -1.7 twin-arginine translocation pathway signal protein compare
PS417_20785 -2.3 -7.0 transcriptional regulator compare
PS417_19825 -2.2 -10.6 ATPase AAA compare
PS417_01405 -2.1 -3.0 sugar transporter compare
PS417_19755 -2.1 -2.5 flagellar motor switch protein FliM compare
PS417_20705 -2.0 -5.3 cbb3-type cytochrome c oxidase subunit II compare
PS417_01915 -2.0 -1.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_19675 -2.0 -5.0 chemotaxis protein CheY compare
PS417_14065 -2.0 -10.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_01390 -1.9 -13.2 PbsX family transcriptional regulator compare
PS417_21565 -1.9 -4.4 flagellar basal body rod protein FlgC compare
PS417_06680 -1.9 -9.0 nuclease PIN compare
PS417_19725 -1.9 -4.8 flagellar biosynthesis protein FlhB compare
PS417_23380 -1.8 -2.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_08435 -1.8 -1.8 pilus assembly protein PilZ compare
PS417_19765 -1.8 -6.6 flagellar hook-length control protein compare
PS417_20985 -1.8 -3.5 porin compare
PS417_02435 -1.8 -6.1 flagellar motor protein MotA compare
PS417_01415 -1.8 -8.8 glycosyl transferase family 1 compare
PS417_21570 -1.8 -7.4 flagellar basal body rod protein FlgB compare
PS417_04375 -1.8 -3.4 ABC transporter ATP-binding protein compare
PS417_21555 -1.8 -7.9 flagellar hook protein FlgE compare
PS417_01420 -1.7 -10.3 histidine kinase compare
PS417_26660 -1.7 -4.8 protein PilI compare
PS417_12355 -1.7 -1.3 magnesium chelatase compare
PS417_01410 -1.7 -6.4 transporter compare
PS417_27245 -1.7 -3.4 aminotransferase DegT compare
PS417_19805 -1.7 -5.0 flagellar M-ring protein FliF compare
PS417_01395 -1.7 -9.7 biofilm formation protein PelB compare
PS417_19840 -1.6 -8.6 flagellar cap protein FliD compare
PS417_22520 -1.6 -2.5 histidine kinase compare
PS417_19520 -1.6 -3.1 transcriptional regulator compare
PS417_08090 -1.6 -1.0 3-oxoacyl-ACP reductase compare
PS417_19850 -1.6 -6.3 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_03260 -1.6 -2.0 5S ribosomal RNA compare
PS417_19860 -1.6 -9.6 flagellar hook protein FlgL compare
PS417_19880 -1.6 -5.0 flagellar basal body L-ring protein compare
PS417_23385 -1.6 -6.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_12390 -1.6 -1.9 hypothetical protein compare
PS417_19800 -1.6 -1.9 flagellar motor switch protein FliG compare
PS417_09010 -1.6 -2.5 phosphohistidine phosphatase compare
PS417_08155 -1.5 -2.1 integration host factor subunit beta compare
PS417_09420 -1.5 -1.6 LysR family transcriptional regulator compare
PS417_20755 -1.5 -3.3 membrane protein compare
PS417_19865 -1.5 -7.3 flagellar hook protein FlgK compare
PS417_21430 -1.4 -2.4 3-oxoacyl-ACP synthase compare
PS417_20105 -1.4 -11.4 glycosyl transferase compare
PS417_19695 -1.4 -5.6 flagellar biosynthesis sigma factor compare
PS417_27795 -1.4 -0.9 orotate phosphoribosyltransferase compare
PS417_24500 -1.4 -3.8 DEAD/DEAH box helicase compare
PS417_06375 -1.4 -1.1 deoxycytidine triphosphate deaminase compare
PS417_19745 -1.4 -3.7 flagellar assembly protein FliO compare
PS417_02560 -1.4 -2.1 23S rRNA methyltransferase compare
PS417_11405 -1.4 -3.1 precorrin 6A synthase compare
PS417_22990 -1.4 -1.3 iron dicitrate transport regulator FecR compare
PS417_03145 -1.4 -1.8 acetyl-CoA acetyltransferase compare
PS417_20030 -1.4 -2.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_19720 -1.4 -1.1 DNA-binding protein compare
PS417_21585 -1.3 -5.3 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_25175 -1.3 -3.3 hypothetical protein compare
PS417_26655 -1.3 -5.7 chemotaxis protein compare
PS417_25315 -1.3 -4.9 membrane protein compare
PS417_23775 -1.3 -1.0 exodeoxyribonuclease V subunit beta compare
PS417_23390 -1.2 -5.8 ubiquinol oxidase subunit II compare
PS417_08685 -1.2 -1.7 flagellar hook-length control protein FliK compare
PS417_04650 -1.2 -1.8 D-alanine--D-alanine ligase compare
PS417_20700 -1.2 -6.1 cbb3-type cytochrome c oxidase subunit I compare
PS417_06685 -1.2 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_11015 -1.2 -1.8 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
PS417_12325 -1.2 -3.6 precorrin-4 C11-methyltransferase compare
PS417_11440 -1.2 -1.5 hypothetical protein compare
PS417_22705 -1.2 -1.4 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_04170 -1.2 -4.9 stringent starvation protein A compare
PS417_08365 -1.2 -0.9 hypothetical protein compare
PS417_16465 -1.2 -6.3 sirohydrochlorin ferrochelatase compare
PS417_20095 -1.2 -8.4 hypothetical protein compare
PS417_27875 -1.2 -6.1 histidine kinase compare
PS417_03920 -1.2 -2.8 dephospho-CoA kinase compare
PS417_10095 -1.2 -1.3 hypothetical protein compare
PS417_05815 -1.2 -4.2 recombinase RecA compare
PS417_02270 -1.2 -3.1 carbamoyltransferase compare
PS417_21595 -1.2 -2.4 flagellar biosynthesis protein FlgN compare
PS417_04385 -1.2 -3.3 organic solvent ABC transporter substrate-binding protein compare
PS417_19740 -1.2 -2.4 flagellar biosynthesis protein flip compare
PS417_19735 -1.2 -3.2 flagellar biosynthesis protein FliQ compare
PS417_04365 -1.2 -0.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_01850 -1.1 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_25390 -1.1 -4.3 MFS transporter compare
PS417_06540 -1.1 -1.6 membrane protein compare
PS417_26515 -1.1 -3.4 hypothetical protein compare
PS417_22950 -1.1 -4.1 preQ0 transporter compare
PS417_00845 -1.1 -1.4 transcriptional regulator compare
PS417_12310 -1.1 -4.5 methionine synthase compare
PS417_27075 -1.1 -3.6 thiol-disulfide isomerase compare
PS417_20115 -1.1 -2.7 hypothetical protein compare
PS417_20775 -1.1 -3.6 coproporphyrinogen III oxidase compare
PS417_20090 -1.1 -7.0 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_20025 -1.1 -1.5 alpha-ribazole phosphatase compare
PS417_22060 -1.1 -1.0 hypothetical protein compare
PS417_02895 -1.1 -1.1 precorrin-6Y C5,15-methyltransferase compare
PS417_28275 -1.1 -3.1 cobalamin biosynthesis protein CobW compare
PS417_21070 -1.1 -2.2 aconitate hydratase compare
PS417_19830 -1.1 -1.3 flagellar assembly protein FliT compare
PS417_19710 -1.1 -5.3 flagellar biosynthesis protein FlhA compare
PS417_05570 -1.1 -3.1 DeoR faimly transcriptional regulator compare
PS417_27800 -1.1 -2.8 exodeoxyribonuclease III compare
PS417_03525 -1.1 -1.6 hypothetical protein compare
PS417_02985 -1.1 -6.6 diguanylate cyclase compare
PS417_02890 -1.0 -2.7 cobalt-precorrin-6X reductase compare
PS417_27865 -1.0 -3.4 LysR family transcriptional regulator compare
PS417_19650 -1.0 -4.9 chemotaxis protein CheW compare
PS417_19095 -1.0 -1.4 hypothetical protein compare
PS417_26605 -1.0 -1.1 malonate decarboxylase subunit beta compare
PS417_10040 -1.0 -1.1 MFS transporter compare
PS417_24115 -1.0 -1.3 hypothetical protein compare
PS417_19790 -1.0 -2.2 ATP synthase compare
PS417_15255 -1.0 -1.3 serine/threonine protein kinase compare
PS417_06730 -1.0 -1.0 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_22570 -1.0 -0.7 H-NS histone compare
PS417_21840 -1.0 -2.5 chemotaxis protein compare
PS417_14540 -1.0 -1.1 cytochrome C oxidase subunit III compare
PS417_24265 -1.0 -3.1 ABC transporter ATP-binding protein compare
PS417_22690 -1.0 -3.2 phosphogluconate dehydratase compare
PS417_02280 -1.0 -2.4 GlcNAc-PI de-N-acetylase compare
PS417_12350 -0.9 -6.1 cobalamin biosynthesis protein CobN compare
PS417_15390 -0.9 -1.9 hypothetical protein compare
PS417_06845 -0.9 -1.4 lipoprotein compare
PS417_23910 -0.9 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_05635 -0.9 -3.7 membrane protein compare
PS417_26815 -0.9 -1.9 peptidase M16 compare
PS417_20050 -0.9 -4.3 cobalamin biosynthesis protein CobD compare
PS417_15820 -0.9 -0.9 universal stress protein UspA compare
PS417_23375 -0.9 -1.5 cytochrome C oxidase compare
PS417_19350 -0.9 -2.9 GTP cyclohydrolase compare
PS417_01400 -0.9 -1.1 hypothetical protein compare
PS417_20045 -0.9 -4.0 threonine-phosphate decarboxylase compare
PS417_02415 -0.9 -2.8 phosphoserine phosphatase compare
PS417_04975 -0.9 -2.2 response regulator receiver protein compare
PS417_09600 -0.9 -3.6 glycosyl transferase family 1 compare
PS417_03300 -0.9 -3.1 alanine acetyltransferase compare
PS417_17215 -0.9 -3.5 peptidylprolyl isomerase compare
PS417_00355 -0.9 -2.1 metal ABC transporter permease compare
PS417_04055 -0.9 -3.1 peptide transporter compare
PS417_27305 -0.9 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
PS417_27195 -0.9 -1.0 N-acetylglutamate synthase compare
PS417_01955 -0.9 -4.4 peptidase compare
PS417_20060 -0.9 -4.5 cobyrinic acid a,c-diamide synthase compare
PS417_00900 -0.9 -2.1 4-aminobutyrate aminotransferase compare
PS417_11535 -0.9 -1.9 nicotinate phosphoribosyltransferase compare
PS417_05595 -0.9 -4.7 ornithine carbamoyltransferase compare
PS417_11770 -0.9 -1.3 pyruvate dehydrogenase compare
PS417_23760 -0.9 -3.7 DeoR faimly transcriptional regulator compare
PS417_16720 -0.9 -0.9 membrane protein compare
PS417_10275 -0.9 -1.7 histidine kinase compare
PS417_07710 -0.9 -4.9 membrane protein compare
PS417_19730 -0.9 -1.5 flagellar biosynthesis protein FliR compare
PS417_20930 -0.9 -3.8 50S rRNA methyltransferase compare
PS417_02740 -0.9 -1.1 LysR family transcriptional regulator compare
PS417_07640 -0.9 -2.2 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_24370 -0.9 -0.8 (2Fe-2S)-binding protein compare
PS417_02880 -0.9 -1.4 copper chaperone compare
PS417_03630 -0.9 -2.4 hypothetical protein compare
PS417_13805 -0.8 -4.7 4-amino-4-deoxy-L-arabinose transferase compare
PS417_11225 -0.8 -2.7 glyoxalase compare
PS417_19795 -0.8 -3.3 flagellar assembly protein FliH compare
PS417_09305 -0.8 -2.0 hypothetical protein compare
PS417_23160 -0.8 -1.1 50S rRNA methyltransferase compare
PS417_15495 -0.8 -1.1 FAD-dependent oxidoreductase compare
PS417_02440 -0.8 -1.7 flagellar motor protein MotB compare
PS417_01385 -0.8 -3.2 NAD-dependent dehydratase compare
PS417_20035 -0.8 -3.5 adenosylcobinamide kinase compare
PS417_12345 -0.8 -2.1 cobalamin biosynthesis protein CobW compare
PS417_12540 -0.8 -2.0 hypothetical protein compare
PS417_14260 -0.8 -2.1 phosphate ABC transporter permease compare
PS417_01580 -0.8 -1.1 imidazole glycerol phosphate synthase compare
PS417_02910 -0.8 -3.1 precorrin-2 C20-methyltransferase compare
PS417_02975 -0.8 -2.4 3-dehydroquinate dehydratase compare
PS417_10860 -0.8 -1.2 flagellar basal body rod protein FlgG compare
PS417_18845 -0.8 -2.0 peptidase compare
PS417_17125 -0.8 -2.4 transcriptional regulator compare
PS417_06675 -0.8 -2.3 ATP-dependent helicase compare
PS417_01715 -0.8 -0.8 hypothetical protein compare
PS417_15285 -0.8 -0.7 type VI secretion protein compare
PS417_00345 -0.8 -1.7 copper-binding protein compare
PS417_01620 -0.8 -1.8 preprotein translocase subunit SecB compare
PS417_05255 -0.8 -3.3 hypothetical protein compare
PS417_23370 -0.8 -2.1 protoheme IX farnesyltransferase compare
PS417_10810 -0.8 -1.5 hypothetical protein compare
PS417_20100 -0.8 -4.1 hypothetical protein compare
PS417_12595 -0.8 -1.5 transcriptional regulator compare
PS417_22340 -0.8 -2.9 carbamate kinase compare
PS417_16400 -0.8 -1.3 NAD(P)H-quinone oxidoreductase compare


Specific Phenotypes

For 5 genes in this experiment