Experiment set8IT011 for Pseudomonas simiae WCS417

Compare to:

2-Deoxy-D-Ribose 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -7.2 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_07250 -6.9 -4.7 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) conserved
PS417_07245 -6.4 -3.8 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_04415 -6.0 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18560 -5.8 -11.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02510 -5.7 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27040 -5.7 -3.1 3-phosphoglycerate dehydrogenase compare
PS417_04420 -5.4 -11.5 histidinol dehydrogenase compare
PS417_23800 -5.2 -12.5 ketol-acid reductoisomerase compare
PS417_18585 -5.1 -7.0 3-isopropylmalate dehydrogenase compare
PS417_01565 -4.9 -6.2 imidazole glycerol phosphate synthase compare
PS417_24155 -4.8 -4.7 ATP-binding protein compare
PS417_07260 -4.8 -11.5 2-deoxy-D-ribonate transporter 2 (from data) compare
PS417_25725 -4.7 -17.1 anthranilate synthase component I compare
PS417_18600 -4.7 -2.9 isopropylmalate isomerase compare
PS417_23805 -4.6 -5.7 acetolactate synthase 3 regulatory subunit compare
PS417_04380 -4.5 -2.7 ABC transporter permease compare
PS417_26740 -4.4 -9.3 homoserine acetyltransferase compare
PS417_25715 -4.3 -5.9 anthranilate phosphoribosyltransferase compare
PS417_13970 -4.2 -8.1 glycerate kinase conserved
PS417_23545 -4.2 -4.0 gamma-glutamyl kinase compare
PS417_20985 -4.2 -5.7 porin compare
PS417_07265 -4.1 -15.3 2-deoxy-D-ribonate transporter 1 (from data) compare
PS417_24745 -4.0 -6.1 gamma-glutamyl phosphate reductase compare
PS417_26890 -4.0 -8.4 dihydroxy-acid dehydratase compare
PS417_25720 -4.0 -8.1 anthranilate synthase component II compare
PS417_01855 -3.9 -3.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_23810 -3.9 -12.2 acetolactate synthase 3 catalytic subunit compare
PS417_10885 -3.9 -11.5 Deoxyribose 1-dehydrogenase, beta subunit (from data) compare
PS417_01850 -3.8 -8.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_00185 -3.8 -4.2 tryptophan synthase subunit beta compare
PS417_16465 -3.8 -10.8 sirohydrochlorin ferrochelatase compare
PS417_12290 -3.8 -8.8 sulfite reductase compare
PS417_04180 -3.8 -5.9 GntR family transcriptional regulator compare
PS417_18530 -3.8 -6.3 O-succinylhomoserine sulfhydrylase compare
PS417_23995 -3.7 -1.3 preprotein translocase subunit SecG compare
PS417_16990 -3.7 -8.2 acyl-CoA dehydrogenase compare
PS417_26745 -3.7 -8.4 methionine biosynthesis protein MetW compare
PS417_18595 -3.6 -3.4 3-isopropylmalate dehydratase compare
PS417_07255 -3.4 -7.2 Deoxyribonolactonase (from data) conserved
PS417_13975 -3.4 -3.8 CdaR family transcriptional regulator compare
PS417_02005 -3.3 -12.1 glutamate synthase compare
PS417_02000 -3.3 -13.0 glutamate synthase compare
PS417_27195 -3.3 -1.6 N-acetylglutamate synthase compare
PS417_23950 -3.2 -4.5 polynucleotide phosphorylase/polyadenylase compare
PS417_22450 -3.1 -2.6 ATP-dependent DNA helicase RuvA compare
PS417_01580 -3.1 -1.4 imidazole glycerol phosphate synthase compare
PS417_00650 -3.1 -1.5 LysR family transcriptional regulator compare
PS417_23110 -3.0 -7.0 2-isopropylmalate synthase compare
PS417_07240 -2.9 -3.4 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_10890 -2.9 -7.2 Deoxyribose 1-dehydrogenase, alpha subunit (from data) compare
PS417_01605 -2.9 -2.4 phosphoglycerate mutase compare
PS417_04865 -2.9 -3.7 molybdenum cofactor biosynthesis protein MoaC compare
PS417_08155 -2.8 -3.0 integration host factor subunit beta compare
PS417_21395 -2.8 -10.3 radical SAM protein compare
PS417_21490 -2.6 -8.5 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
PS417_27795 -2.6 -1.2 orotate phosphoribosyltransferase compare
PS417_22445 -2.5 -5.7 ATP-dependent DNA helicase RuvB compare
PS417_06375 -2.5 -1.5 deoxycytidine triphosphate deaminase compare
PS417_20160 -2.5 -2.8 cysteine synthase compare
PS417_26730 -2.4 -1.1 pyrroline-5-carboxylate reductase compare
PS417_09695 -2.4 -3.2 hydrolase compare
PS417_27875 -2.4 -8.1 histidine kinase compare
PS417_09725 -2.4 -7.5 transporter compare
PS417_02415 -2.3 -4.5 phosphoserine phosphatase compare
PS417_00180 -2.3 -3.0 tryptophan synthase subunit alpha compare
PS417_05595 -2.2 -9.5 ornithine carbamoyltransferase compare
PS417_21035 -2.2 -9.5 multidrug transporter compare
PS417_25710 -2.2 -1.4 indole-3-glycerol-phosphate synthase compare
PS417_13990 -2.2 -2.5 LysR family transcriptional regulator compare
PS417_01570 -2.2 -2.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_08125 -2.0 -1.4 prephenate dehydratase compare
PS417_14940 -2.0 -2.3 LysR family transcriptional regulator compare
PS417_23770 -2.0 -3.0 exodeoxyribonuclease V subunit alpha compare
PS417_04595 -1.9 -3.5 cell division protein MraZ compare
PS417_26985 -1.9 -6.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_26850 -1.8 -1.5 twin-arginine translocation pathway signal protein compare
PS417_08225 -1.8 -5.9 acetolactate synthase compare
PS417_26770 -1.8 -2.2 tRNA (guanine-N7)-methyltransferase compare
PS417_08670 -1.8 -4.3 molybdopterin biosynthesis protein B compare
PS417_10515 -1.6 -4.8 acetyl-CoA acetyltransferase compare
PS417_23170 -1.6 -2.1 FeS assembly protein IscX compare
PS417_10880 -1.6 -5.2 cytochrome c component of deoxyribose dehydrogenase (from data) compare
PS417_06370 -1.5 -2.3 cold-shock protein compare
PS417_06540 -1.5 -2.4 membrane protein compare
PS417_27300 -1.5 -1.4 cell division protein ZapA compare
PS417_05010 -1.5 -1.5 IclR family transcriptional regulator compare
PS417_20125 -1.5 -4.5 phosphoribosylglycinamide formyltransferase compare
PS417_27605 -1.5 -4.8 hypothetical protein compare
PS417_06365 -1.4 -6.4 RNA polymerase sigma factor compare
PS417_16490 -1.4 -1.9 cell division protein FtsK compare
PS417_07615 -1.4 -5.5 TetR family transcriptional regulator compare
PS417_01560 -1.4 -1.8 imidazoleglycerol-phosphate dehydratase compare
PS417_21495 -1.4 -1.7 lipoprotein compare
PS417_12520 -1.4 -4.0 hypothetical protein compare
PS417_04375 -1.3 -2.7 ABC transporter ATP-binding protein compare
PS417_06895 -1.3 -3.1 DNA-binding protein compare
PS417_19425 -1.3 -0.9 allantoicase compare
PS417_08435 -1.3 -1.6 pilus assembly protein PilZ compare
PS417_04875 -1.2 -1.0 molybdenum cofactor biosynthesis protein MoaE compare
PS417_09705 -1.2 -1.9 hypothetical protein compare
PS417_23375 -1.2 -1.8 cytochrome C oxidase compare
PS417_22670 -1.2 -4.8 AraC family transcriptional regulator compare
PS417_01095 -1.2 -1.2 amino acid ABC transporter ATP-binding protein compare
PS417_04590 -1.2 -5.1 methyltransferase compare
PS417_22570 -1.2 -0.9 H-NS histone compare
PS417_27870 -1.2 -4.1 ATP-dependent DNA helicase RecG compare
PS417_15510 -1.2 -1.9 hypothetical protein compare
PS417_22520 -1.2 -2.0 histidine kinase compare
PS417_01710 -1.2 -4.3 histidine utilization repressor compare
PS417_14245 -1.2 -1.7 hypothetical protein compare
PS417_09700 -1.2 -2.7 transaldolase compare
PS417_22115 -1.2 -2.3 transcriptional regulator compare
PS417_22385 -1.2 -6.5 quinolinate synthase A compare
PS417_17705 -1.2 -3.0 LacI family transcriptional regulator compare
PS417_04385 -1.1 -3.1 organic solvent ABC transporter substrate-binding protein compare
PS417_10995 -1.1 -1.6 GntR family transcriptional regulator compare
PS417_00755 -1.1 -0.8 biofilm PGA synthesis protein PgaD compare
PS417_21000 -1.1 -1.4 CrfX protein compare
PS417_03925 -1.1 -4.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_10245 -1.1 -1.2 hypothetical protein compare
PS417_26815 -1.1 -2.3 peptidase M16 compare
PS417_08580 -1.1 -4.3 histidine kinase compare
PS417_27910 -1.1 -1.7 PppA compare
PS417_01620 -1.0 -1.4 preprotein translocase subunit SecB compare
PS417_05985 -1.0 -1.4 chemotaxis protein CheY compare
PS417_24935 -1.0 -1.1 hypothetical protein compare
PS417_06865 -1.0 -1.8 transporter compare
PS417_22050 -1.0 -4.3 ribonuclease BN compare
PS417_10520 -1.0 -3.1 succinyl-CoA:3-ketoacid-CoA transferase compare
PS417_11845 -1.0 -2.4 RpiR family transcriptional regulator compare
PS417_26900 -1.0 -1.0 L-cystine transporter tcyP compare
PS417_09830 -1.0 -3.4 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_24835 -1.0 -3.5 hypothetical protein compare
PS417_07115 -1.0 -6.7 L-aspartate oxidase compare
PS417_21705 -1.0 -3.1 arginine N-succinyltransferase compare
PS417_15325 -0.9 -1.0 type VI secretion protein compare
PS417_08675 -0.9 -4.2 molybdenum cofactor biosynthesis protein MoaA compare
PS417_27435 -0.9 -4.8 polyphosphate kinase compare
PS417_16005 -0.9 -2.0 ATPase compare
PS417_12280 -0.9 -1.5 MerR family transcriptional regulator compare
PS417_24705 -0.9 -2.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_00085 -0.9 -1.5 16S rRNA methyltransferase compare
PS417_12310 -0.9 -4.2 methionine synthase compare
PS417_21125 -0.9 -3.9 phosphoadenosine phosphosulfate reductase compare
PS417_10095 -0.9 -1.6 hypothetical protein compare
PS417_16510 -0.9 -1.7 Clp protease ClpX compare
PS417_13295 -0.9 -3.7 TetR family transcriptional regulator compare
PS417_27865 -0.9 -2.7 LysR family transcriptional regulator compare
PS417_01950 -0.9 -3.0 malate dehydrogenase compare
PS417_17980 -0.9 -1.2 ABC transporter permease compare
PS417_20665 -0.9 -4.1 hypothetical protein compare
PS417_18435 -0.9 -1.6 hypothetical protein compare
PS417_27705 -0.9 -1.2 amino acid dehydrogenase compare
PS417_12910 -0.9 -2.0 alanine racemase compare
PS417_23250 -0.9 -3.8 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_14710 -0.9 -1.4 isochorismatase compare
PS417_07560 -0.9 -1.1 universal stress protein UspA compare
PS417_08245 -0.9 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_07015 -0.9 -2.9 helicase compare
PS417_00355 -0.9 -2.8 metal ABC transporter permease compare
PS417_02385 -0.9 -1.1 esterase compare
PS417_07710 -0.9 -4.2 membrane protein compare
PS417_27305 -0.9 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
PS417_14235 -0.9 -1.9 hypothetical protein compare
PS417_04585 -0.9 -1.5 hypothetical protein compare
PS417_08230 -0.9 -1.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_14590 -0.8 -1.5 LysR family transcriptional regulator compare
PS417_02950 -0.8 -1.5 tRNA-dihydrouridine synthase B compare
PS417_18630 -0.8 -2.5 tRNA-dihydrouridine synthase C compare
PS417_06710 -0.8 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_03465 -0.8 -1.1 type III secretion protein compare
PS417_08200 -0.8 -1.6 hypothetical protein compare
PS417_09720 -0.8 -1.5 methyltransferase compare
PS417_12195 -0.8 -3.2 ABC transporter permease compare
PS417_27445 -0.8 -4.3 membrane protein compare
PS417_20775 -0.8 -4.5 coproporphyrinogen III oxidase compare
PS417_00660 -0.8 -2.1 DSBA oxidoreductase compare
PS417_14015 -0.8 -2.2 LysR family transcriptional regulator compare
PS417_01145 -0.8 -0.6 taurine transporter ATP-binding subunit compare
PS417_12840 -0.8 -2.3 TetR family transcriptional regulator compare
PS417_04365 -0.8 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_06200 -0.8 -2.9 protein-PII uridylyltransferase compare
PS417_10220 -0.8 -1.5 hypothetical protein compare
PS417_26420 -0.8 -0.8 hypothetical protein compare
PS417_10040 -0.8 -0.9 MFS transporter compare
PS417_16195 -0.8 -0.8 AraC family transcriptional regulator compare
PS417_14775 -0.8 -2.6 major facilitator transporter compare
PS417_21575 -0.8 -3.8 chemotaxis protein compare
PS417_12565 -0.8 -1.7 2-dehydro-3-deoxygluconokinase compare
PS417_09460 -0.8 -1.4 alkanesulfonate monooxygenase compare
PS417_21090 -0.7 -1.1 hypothetical protein compare
PS417_11880 -0.7 -1.4 oxidoreductase compare
PS417_12755 -0.7 -1.6 RND transporter compare
PS417_09325 -0.7 -3.5 peptidase S41 compare
PS417_21140 -0.7 -2.4 LysR family transcriptional regulator compare
PS417_05865 -0.7 -1.7 hypothetical protein compare
PS417_09545 -0.7 -1.7 aldehyde-activating protein compare
PS417_13205 -0.7 -1.3 isochorismate-pyruvate lyase compare
PS417_27595 -0.7 -1.5 recombinase XerC compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source 2-Deoxy-D-Ribose in Pseudomonas simiae WCS417

For carbon source 2-Deoxy-D-Ribose across organisms