Experiment set8IT010 for Pseudomonas simiae WCS417

Compare to:

Deoxyribonucleic acid from herring sperm 5 mg/mL carbon source

200 most important genes:

  gene name fitness t score description  
PS417_24155 -4.0 -5.4 ATP-binding protein compare
PS417_27195 -3.4 -1.5 N-acetylglutamate synthase compare
PS417_06375 -3.3 -1.5 deoxycytidine triphosphate deaminase compare
PS417_00185 -3.0 -3.9 tryptophan synthase subunit beta compare
PS417_18595 -2.9 -4.3 3-isopropylmalate dehydratase compare
PS417_23800 -2.9 -12.0 ketol-acid reductoisomerase compare
PS417_20985 -2.7 -4.5 porin compare
PS417_18585 -2.6 -6.4 3-isopropylmalate dehydrogenase compare
PS417_01850 -2.6 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18600 -2.6 -4.0 isopropylmalate isomerase compare
PS417_01565 -2.6 -6.0 imidazole glycerol phosphate synthase compare
PS417_04415 -2.5 -7.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01855 -2.5 -3.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_26730 -2.5 -1.1 pyrroline-5-carboxylate reductase compare
PS417_04420 -2.5 -9.8 histidinol dehydrogenase compare
PS417_22520 -2.5 -3.3 histidine kinase compare
PS417_22445 -2.4 -4.5 ATP-dependent DNA helicase RuvB compare
PS417_23805 -2.4 -4.7 acetolactate synthase 3 regulatory subunit compare
PS417_01575 -2.3 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23810 -2.3 -10.5 acetolactate synthase 3 catalytic subunit compare
PS417_01605 -2.3 -1.8 phosphoglycerate mutase compare
PS417_26890 -2.3 -7.8 dihydroxy-acid dehydratase compare
PS417_16490 -2.2 -3.3 cell division protein FtsK compare
PS417_01580 -2.2 -1.9 imidazole glycerol phosphate synthase compare
PS417_25715 -2.1 -5.7 anthranilate phosphoribosyltransferase compare
PS417_00180 -2.1 -3.3 tryptophan synthase subunit alpha compare
PS417_02510 -2.1 -9.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_19420 -2.1 -5.2 OHCU decarboxylase conserved
PS417_14940 -2.1 -2.4 LysR family transcriptional regulator compare
PS417_20885 -2.0 -7.1 Xanthine dehydrogenase (EC 1.17.1.4) (from data) conserved
PS417_19415 -2.0 -3.8 allantoinase compare
PS417_26740 -2.0 -8.4 homoserine acetyltransferase compare
PS417_08155 -2.0 -2.4 integration host factor subunit beta compare
PS417_18560 -2.0 -9.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23770 -2.0 -2.9 exodeoxyribonuclease V subunit alpha compare
PS417_23110 -1.9 -6.0 2-isopropylmalate synthase compare
PS417_13510 -1.9 -1.5 polyketide cyclase compare
PS417_24745 -1.8 -3.2 gamma-glutamyl phosphate reductase compare
PS417_19435 -1.8 -7.3 urate hydroxylase (1.7.3.3) (from data) conserved
PS417_25710 -1.8 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_20890 -1.7 -10.9 Xanthine dehydrogenase (EC 1.17.1.4) (from data) conserved
PS417_21395 -1.7 -11.2 radical SAM protein compare
PS417_08670 -1.7 -4.3 molybdopterin biosynthesis protein B compare
PS417_18530 -1.7 -5.5 O-succinylhomoserine sulfhydrylase compare
PS417_20895 -1.7 -9.1 molybdenum cofactor sulfurylase compare
PS417_25720 -1.7 -7.1 anthranilate synthase component II compare
PS417_19430 -1.7 -2.6 ureidoglycolate hydrolase compare
PS417_25725 -1.7 -10.5 anthranilate synthase component I compare
PS417_08125 -1.6 -1.2 prephenate dehydratase compare
PS417_17450 -1.6 -3.1 amino acid ABC transporter substrate-binding protein compare
PS417_19425 -1.5 -1.0 allantoicase compare
PS417_03205 -1.5 -7.3 adenine deaminase conserved
PS417_26745 -1.5 -5.7 methionine biosynthesis protein MetW compare
PS417_26805 -1.4 -1.2 cell division protein FtsE compare
PS417_04875 -1.4 -1.6 molybdenum cofactor biosynthesis protein MoaE compare
PS417_02000 -1.4 -8.2 glutamate synthase compare
PS417_06730 -1.4 -1.5 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_01560 -1.4 -2.6 imidazoleglycerol-phosphate dehydratase compare
PS417_04080 -1.4 -2.2 peptide ABC transporter substrate-binding protein compare
PS417_26605 -1.4 -1.5 malonate decarboxylase subunit beta compare
PS417_02005 -1.4 -7.5 glutamate synthase compare
PS417_23775 -1.4 -2.0 exodeoxyribonuclease V subunit beta compare
PS417_09695 -1.3 -2.4 hydrolase compare
PS417_27040 -1.3 -2.2 3-phosphoglycerate dehydrogenase compare
PS417_06540 -1.3 -2.0 membrane protein compare
PS417_04410 -1.3 -2.2 hypothetical protein compare
PS417_25920 -1.3 -5.7 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_21750 -1.3 -9.4 acetyl-CoA synthetase compare
PS417_04865 -1.3 -2.0 molybdenum cofactor biosynthesis protein MoaC compare
PS417_25940 -1.3 -5.2 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_17485 -1.2 -5.1 membrane protein compare
PS417_27795 -1.2 -0.8 orotate phosphoribosyltransferase compare
PS417_26850 -1.2 -1.2 twin-arginine translocation pathway signal protein compare
PS417_22570 -1.2 -0.9 H-NS histone compare
PS417_05165 -1.2 -2.4 cytosol aminopeptidase compare
PS417_22375 -1.2 -1.1 cold-shock protein compare
PS417_04650 -1.2 -1.8 D-alanine--D-alanine ligase compare
PS417_07560 -1.2 -1.5 universal stress protein UspA compare
PS417_27705 -1.2 -1.4 amino acid dehydrogenase compare
PS417_11530 -1.1 -2.8 amidase compare
PS417_05595 -1.1 -5.5 ornithine carbamoyltransferase compare
PS417_04375 -1.1 -2.3 ABC transporter ATP-binding protein compare
PS417_23950 -1.1 -1.9 polynucleotide phosphorylase/polyadenylase compare
PS417_08675 -1.1 -4.3 molybdenum cofactor biosynthesis protein MoaA compare
PS417_08810 -1.1 -5.5 glyoxylate carboligase (EC 4.1.1.47) (from data) conserved
PS417_23995 -1.1 -0.7 preprotein translocase subunit SecG compare
PS417_24615 -1.1 -1.1 hypothetical protein compare
PS417_17610 -1.1 -0.7 AsnC family transcriptional regulator compare
PS417_11930 -1.1 -5.5 hypothetical protein compare
PS417_27910 -1.1 -2.6 PppA compare
PS417_12160 -1.1 -3.2 Fis family transcriptional regulator compare
PS417_21210 -1.1 -1.7 amidotransferase compare
PS417_15095 -1.1 -1.5 hypothetical protein compare
PS417_27300 -1.1 -1.1 cell division protein ZapA compare
PS417_09210 -1.1 -1.3 TetR family transcriptional regulator compare
PS417_04180 -1.0 -2.3 GntR family transcriptional regulator compare
PS417_09085 -1.0 -0.9 hypothetical protein compare
PS417_17435 -1.0 -4.7 dehydrogenase compare
PS417_01570 -1.0 -1.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_09725 -1.0 -5.1 transporter compare
PS417_10040 -1.0 -1.2 MFS transporter compare
PS417_04585 -1.0 -1.2 hypothetical protein compare
PS417_17455 -1.0 -2.0 cytochrome C compare
PS417_09325 -1.0 -3.4 peptidase S41 compare
PS417_27305 -1.0 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
PS417_25930 -1.0 -4.1 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_17495 -0.9 -4.0 multidrug ABC transporter permease compare
PS417_12520 -0.9 -1.5 hypothetical protein compare
PS417_05365 -0.9 -1.2 FAD-binding protein compare
PS417_20080 -0.9 -2.0 peptidase P60 compare
PS417_06835 -0.9 -2.8 phospholipase compare
PS417_02485 -0.9 -3.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_03300 -0.9 -3.5 alanine acetyltransferase compare
PS417_10060 -0.9 -1.3 hypothetical protein compare
PS417_08580 -0.9 -3.7 histidine kinase compare
PS417_15665 -0.9 -1.3 hypothetical protein compare
PS417_17505 -0.9 -1.3 LuxR family transcriptional regulator compare
PS417_06175 -0.9 -2.8 cysteine sulfinate desulfinase compare
PS417_05985 -0.9 -1.5 chemotaxis protein CheY compare
PS417_17240 -0.8 -2.3 trigger factor compare
PS417_21840 -0.8 -2.7 chemotaxis protein compare
PS417_27010 -0.8 -4.2 threonine dehydratase compare
PS417_17480 -0.8 -2.3 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_17425 -0.8 -2.8 hypothetical protein compare
PS417_02415 -0.8 -3.2 phosphoserine phosphatase compare
PS417_14260 -0.8 -2.5 phosphate ABC transporter permease compare
PS417_22620 -0.8 -1.8 pyruvate kinase compare
PS417_04595 -0.8 -2.0 cell division protein MraZ compare
PS417_00755 -0.8 -0.6 biofilm PGA synthesis protein PgaD compare
PS417_10985 -0.8 -0.8 NADH:flavin oxidoreductase compare
PS417_10810 -0.8 -1.7 hypothetical protein compare
PS417_08090 -0.8 -0.9 3-oxoacyl-ACP reductase compare
PS417_14975 -0.8 -2.4 tRNA hydroxylase compare
PS417_13795 -0.8 -3.8 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_21480 -0.8 -1.2 23S rRNA pseudouridylate synthase compare
PS417_01435 -0.8 -0.9 hypothetical protein compare
PS417_15125 -0.8 -1.9 glutathione S-transferase compare
PS417_26995 -0.8 -3.9 phosphoserine phosphatase compare
PS417_17420 -0.8 -4.0 ethanol oxidation regulatory protein ercA (from data) compare
PS417_27535 -0.8 -3.8 chemotaxis protein CheY compare
PS417_22895 -0.8 -4.4 tyrosine recombinase XerD compare
PS417_06200 -0.8 -3.0 protein-PII uridylyltransferase compare
PS417_21185 -0.8 -3.5 hypothetical protein compare
PS417_02670 -0.8 -2.3 ABC transporter compare
PS417_19650 -0.8 -2.3 chemotaxis protein CheW compare
PS417_10220 -0.8 -2.5 hypothetical protein compare
PS417_01995 -0.8 -2.0 hypothetical protein compare
PS417_18860 -0.8 -3.3 transcriptional regulator compare
PS417_13205 -0.8 -1.0 isochorismate-pyruvate lyase compare
PS417_14980 -0.8 -0.8 universal stress protein UspA compare
PS417_17650 -0.8 -1.4 proteinase compare
PS417_21035 -0.8 -4.1 multidrug transporter compare
PS417_04055 -0.8 -2.7 peptide transporter compare
PS417_05695 -0.8 -2.2 transcriptional regulator compare
PS417_26770 -0.8 -2.0 tRNA (guanine-N7)-methyltransferase compare
PS417_10205 -0.7 -3.7 hypothetical protein compare
PS417_12540 -0.7 -1.1 hypothetical protein compare
PS417_15085 -0.7 -2.6 ATPase AAA compare
PS417_13620 -0.7 -1.5 thermostable hemolysin compare
PS417_18730 -0.7 -1.8 ABC transporter permease compare
PS417_19305 -0.7 -2.0 acireductone dioxygenase compare
PS417_02175 -0.7 -1.4 transcriptional regulator compare
PS417_15045 -0.7 -2.3 cupin compare
PS417_23545 -0.7 -1.5 gamma-glutamyl kinase compare
PS417_19350 -0.7 -2.5 GTP cyclohydrolase compare
PS417_06165 -0.7 -3.3 thiamine biosynthesis protein ThiF compare
PS417_00355 -0.7 -1.9 metal ABC transporter permease compare
PS417_27875 -0.7 -2.8 histidine kinase compare
PS417_20480 -0.7 -1.7 hypothetical protein compare
PS417_28080 -0.7 -5.2 phosphate ABC transporter permease compare
PS417_01715 -0.7 -0.8 hypothetical protein compare
PS417_17515 -0.7 -2.4 GfdT protein compare
PS417_13145 -0.7 -1.7 50S ribosomal protein L21 compare
PS417_09680 -0.7 -1.1 hydrolase compare
PS417_16990 -0.7 -3.3 acyl-CoA dehydrogenase compare
PS417_14710 -0.7 -1.2 isochorismatase compare
PS417_22040 -0.7 -2.2 GNAT family acetyltransferase compare
PS417_11925 -0.7 -1.6 hypothetical protein compare
PS417_08320 -0.7 -1.2 metal-chelation protein CHAD compare
PS417_18025 -0.7 -1.4 cytochrome C compare
PS417_18425 -0.7 -1.1 sporulation protein compare
PS417_25270 -0.7 -1.3 NrdR family transcriptional regulator compare
PS417_21890 -0.7 -1.7 magnesium transporter CorA compare
PS417_15930 -0.7 -2.3 thioredoxin reductase compare
PS417_11720 -0.7 -1.9 class V aminotransferase compare
PS417_27835 -0.7 -2.7 endoribonuclease compare
PS417_02280 -0.7 -1.5 GlcNAc-PI de-N-acetylase compare
PS417_22450 -0.7 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_11555 -0.7 -2.0 (2Fe-2S)-binding protein compare
PS417_09010 -0.7 -0.8 phosphohistidine phosphatase compare
PS417_14760 -0.7 -2.5 membrane protein compare
PS417_21740 -0.7 -2.6 ABC transporter for L-Arginine, permease component 1 (from data) compare
PS417_27870 -0.7 -2.3 ATP-dependent DNA helicase RecG compare
PS417_08135 -0.7 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_22050 -0.7 -2.9 ribonuclease BN compare
PS417_06955 -0.7 -2.8 membrane protein compare
PS417_02365 -0.7 -1.9 hypothetical protein compare
PS417_16085 -0.7 -1.6 LysR family transcriptional regulator compare
PS417_18235 -0.7 -1.9 nitrile hydratase compare
PS417_12595 -0.7 -1.3 transcriptional regulator compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Deoxyribonucleic acid from herring sperm in Pseudomonas simiae WCS417

For carbon source Deoxyribonucleic acid from herring sperm across organisms