Experiment set8IT009 for Pseudomonas simiae WCS417

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Deoxyribonucleic acid from herring sperm 10 mg/mL carbon source

200 most important genes:

  gene name fitness t score description  
PS417_24155 -4.6 -5.4 ATP-binding protein compare
PS417_23800 -4.1 -13.3 ketol-acid reductoisomerase compare
PS417_27795 -4.0 -1.3 orotate phosphoribosyltransferase compare
PS417_18600 -4.0 -3.5 isopropylmalate isomerase compare
PS417_23950 -4.0 -3.7 polynucleotide phosphorylase/polyadenylase compare
PS417_18585 -4.0 -7.5 3-isopropylmalate dehydrogenase compare
PS417_20985 -3.5 -3.4 porin compare
PS417_00180 -3.3 -2.8 tryptophan synthase subunit alpha compare
PS417_23805 -3.2 -6.8 acetolactate synthase 3 regulatory subunit compare
PS417_06375 -3.1 -1.5 deoxycytidine triphosphate deaminase compare
PS417_19415 -3.1 -3.8 allantoinase compare
PS417_22850 -3.0 -10.4 virulence factor family protein compare
PS417_01575 -3.0 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_04420 -2.9 -11.1 histidinol dehydrogenase compare
PS417_04415 -2.9 -7.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02510 -2.9 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_11930 -2.9 -9.4 hypothetical protein compare
PS417_23810 -2.9 -11.0 acetolactate synthase 3 catalytic subunit compare
PS417_23770 -2.8 -3.2 exodeoxyribonuclease V subunit alpha compare
PS417_01580 -2.7 -1.7 imidazole glycerol phosphate synthase compare
PS417_13790 -2.7 -8.6 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_26890 -2.7 -8.6 dihydroxy-acid dehydratase compare
PS417_19425 -2.7 -1.3 allantoicase compare
PS417_01560 -2.7 -3.3 imidazoleglycerol-phosphate dehydratase compare
PS417_13820 -2.7 -12.8 UDP-glucose 6-dehydrogenase compare
PS417_14065 -2.6 -7.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_27245 -2.6 -4.7 aminotransferase DegT compare
PS417_21395 -2.6 -10.8 radical SAM protein compare
PS417_01565 -2.6 -4.8 imidazole glycerol phosphate synthase compare
PS417_26730 -2.6 -1.2 pyrroline-5-carboxylate reductase compare
PS417_00185 -2.5 -3.9 tryptophan synthase subunit beta compare
PS417_13795 -2.5 -6.8 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_24745 -2.5 -4.2 gamma-glutamyl phosphate reductase compare
PS417_01850 -2.4 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23110 -2.4 -7.0 2-isopropylmalate synthase compare
PS417_20885 -2.4 -5.5 Xanthine dehydrogenase (EC 1.17.1.4) (from data) conserved
PS417_18595 -2.4 -3.4 3-isopropylmalate dehydratase compare
PS417_23995 -2.4 -1.1 preprotein translocase subunit SecG compare
PS417_22845 -2.4 -15.4 membrane protein compare
PS417_12595 -2.3 -3.0 transcriptional regulator compare
PS417_19430 -2.3 -3.1 ureidoglycolate hydrolase compare
PS417_02005 -2.3 -12.3 glutamate synthase compare
PS417_04865 -2.3 -3.5 molybdenum cofactor biosynthesis protein MoaC compare
PS417_06635 -2.3 -1.8 ferredoxin compare
PS417_20895 -2.2 -10.6 molybdenum cofactor sulfurylase compare
PS417_19420 -2.2 -6.8 OHCU decarboxylase conserved
PS417_11530 -2.2 -9.4 amidase compare
PS417_18560 -2.2 -7.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26740 -2.1 -7.6 homoserine acetyltransferase compare
PS417_08670 -2.1 -4.4 molybdopterin biosynthesis protein B compare
PS417_19350 -2.1 -4.7 GTP cyclohydrolase compare
PS417_08675 -2.0 -6.0 molybdenum cofactor biosynthesis protein MoaA compare
PS417_13800 -2.0 -3.4 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_02805 -2.0 -2.6 urease subunit gamma compare
PS417_27040 -1.9 -3.0 3-phosphoglycerate dehydrogenase compare
PS417_20890 -1.9 -10.5 Xanthine dehydrogenase (EC 1.17.1.4) (from data) conserved
PS417_01605 -1.9 -1.4 phosphoglycerate mutase compare
PS417_23545 -1.9 -2.8 gamma-glutamyl kinase compare
PS417_25715 -1.9 -4.6 anthranilate phosphoribosyltransferase compare
PS417_08805 -1.9 -7.0 hydroxypyruvate isomerase compare
PS417_25720 -1.8 -6.1 anthranilate synthase component II compare
PS417_13805 -1.8 -7.4 4-amino-4-deoxy-L-arabinose transferase compare
PS417_11585 -1.8 -2.2 LuxR family transcriptional regulator compare
PS417_26770 -1.8 -3.1 tRNA (guanine-N7)-methyltransferase compare
PS417_02000 -1.8 -8.5 glutamate synthase compare
PS417_22445 -1.8 -3.4 ATP-dependent DNA helicase RuvB compare
PS417_21515 -1.7 -7.1 transcriptional regulator compare
PS417_25725 -1.7 -8.7 anthranilate synthase component I compare
PS417_09235 -1.7 -0.9 molecular chaperone compare
PS417_26745 -1.7 -5.2 methionine biosynthesis protein MetW compare
PS417_08810 -1.7 -6.0 glyoxylate carboligase (EC 4.1.1.47) (from data) conserved
PS417_04650 -1.7 -2.3 D-alanine--D-alanine ligase compare
PS417_25710 -1.7 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_11440 -1.7 -2.7 hypothetical protein compare
PS417_03205 -1.6 -5.9 adenine deaminase conserved
PS417_12310 -1.6 -7.1 methionine synthase compare
PS417_08585 -1.6 -2.6 ATPase AAA compare
PS417_19435 -1.6 -4.4 urate hydroxylase (1.7.3.3) (from data) conserved
PS417_22450 -1.6 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_16490 -1.6 -2.4 cell division protein FtsK compare
PS417_05885 -1.6 -4.9 potassium transporter Kup compare
PS417_01570 -1.6 -2.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_26805 -1.5 -1.3 cell division protein FtsE compare
PS417_01915 -1.5 -1.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_27535 -1.5 -8.1 chemotaxis protein CheY compare
PS417_27435 -1.5 -4.8 polyphosphate kinase compare
PS417_24705 -1.5 -4.5 D-alanyl-D-alanine carboxypeptidase compare
PS417_23250 -1.5 -6.2 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_08130 -1.5 -2.9 aspartate aminotransferase compare
PS417_18530 -1.4 -5.2 O-succinylhomoserine sulfhydrylase compare
PS417_22520 -1.4 -2.3 histidine kinase compare
PS417_00830 -1.4 -3.3 hypothetical protein compare
PS417_04410 -1.4 -2.5 hypothetical protein compare
PS417_26420 -1.3 -2.0 hypothetical protein compare
PS417_22810 -1.3 -2.0 DNA base-flipping protein YbaZ compare
PS417_01855 -1.3 -0.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_27835 -1.3 -6.7 endoribonuclease compare
PS417_05595 -1.3 -6.8 ornithine carbamoyltransferase compare
PS417_26850 -1.3 -1.2 twin-arginine translocation pathway signal protein compare
PS417_12515 -1.3 -2.5 lactate dehydrogenase compare
PS417_06685 -1.3 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_03925 -1.3 -5.3 nicotinate-nucleotide pyrophosphorylase compare
PS417_28080 -1.3 -8.8 phosphate ABC transporter permease compare
PS417_27010 -1.2 -6.3 threonine dehydratase compare
PS417_25270 -1.2 -2.7 NrdR family transcriptional regulator compare
PS417_05510 -1.2 -5.2 alpha/beta hydrolase compare
PS417_15770 -1.2 -1.4 pyridoxine 5'-phosphate oxidase compare
PS417_26990 -1.2 -1.0 RNA pyrophosphohydrolase compare
PS417_14295 -1.2 -2.8 AraC family transcriptional regulator compare
PS417_08035 -1.2 -5.5 adenine transporter (MFS superfamily) (from data) compare
PS417_00355 -1.2 -2.9 metal ABC transporter permease compare
PS417_04055 -1.2 -4.0 peptide transporter compare
PS417_14940 -1.1 -1.5 LysR family transcriptional regulator compare
PS417_05505 -1.1 -5.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_27305 -1.1 -5.0 5-formyltetrahydrofolate cyclo-ligase compare
PS417_26510 -1.1 -5.5 5,10-methylenetetrahydrofolate reductase compare
PS417_02555 -1.1 -7.2 exoribonuclease R compare
PS417_16510 -1.0 -2.1 Clp protease ClpX compare
PS417_08730 -1.0 -1.8 cytochrome C compare
PS417_14005 -1.0 -6.7 4-hydroxyphenylpyruvate dioxygenase compare
PS417_26995 -1.0 -5.6 phosphoserine phosphatase compare
PS417_15095 -1.0 -1.9 hypothetical protein compare
PS417_08090 -1.0 -1.0 3-oxoacyl-ACP reductase compare
PS417_23170 -1.0 -1.3 FeS assembly protein IscX compare
PS417_27870 -1.0 -3.7 ATP-dependent DNA helicase RecG compare
PS417_07710 -1.0 -4.4 membrane protein compare
PS417_02280 -1.0 -1.5 GlcNAc-PI de-N-acetylase compare
PS417_15975 -1.0 -0.8 glutamate carboxypeptidase compare
PS417_06145 -1.0 -0.9 hypothetical protein compare
PS417_06445 -1.0 -1.6 iron-siderophore ABC transporter permease compare
PS417_00480 -1.0 -3.8 hypothetical protein compare
PS417_04585 -1.0 -1.2 hypothetical protein compare
PS417_27520 -1.0 -2.3 uroporphyrin-III methyltransferase compare
PS417_04375 -1.0 -2.0 ABC transporter ATP-binding protein compare
PS417_06395 -1.0 -1.7 amino acid transporter compare
PS417_04180 -1.0 -1.9 GntR family transcriptional regulator compare
PS417_23715 -1.0 -2.4 cupin compare
PS417_08320 -0.9 -2.4 metal-chelation protein CHAD compare
PS417_20900 -0.9 -5.8 guanine deaminase conserved
PS417_21740 -0.9 -4.5 ABC transporter for L-Arginine, permease component 1 (from data) compare
PS417_27195 -0.9 -0.5 N-acetylglutamate synthase compare
PS417_19965 -0.9 -5.5 histidine kinase compare
PS417_05160 -0.9 -0.7 DNA polymerase III subunit chi compare
PS417_08125 -0.9 -0.8 prephenate dehydratase compare
PS417_26755 -0.9 -0.9 nucleoside-triphosphate diphosphatase compare
PS417_28070 -0.9 -4.1 phosphate ABC transporter ATP-binding protein compare
PS417_06930 -0.9 -2.3 carnitine dehydratase compare
PS417_02415 -0.9 -3.4 phosphoserine phosphatase compare
PS417_07895 -0.9 -1.4 hypothetical protein compare
PS417_04390 -0.9 -3.0 toluene tolerance protein compare
PS417_02385 -0.9 -0.5 esterase compare
PS417_07845 -0.9 -1.3 transcriptional regulator compare
PS417_04385 -0.9 -2.1 organic solvent ABC transporter substrate-binding protein compare
PS417_01620 -0.9 -1.1 preprotein translocase subunit SecB compare
PS417_28510 -0.9 -3.5 chromosome partitioning protein compare
PS417_01995 -0.8 -2.1 hypothetical protein compare
PS417_08580 -0.8 -2.9 histidine kinase compare
PS417_21070 -0.8 -1.6 aconitate hydratase compare
PS417_18310 -0.8 -1.4 hypothetical protein compare
PS417_04275 -0.8 -5.0 hypothetical protein compare
PS417_06825 -0.8 -1.9 hypothetical protein compare
PS417_03875 -0.8 -1.7 membrane protein compare
PS417_26530 -0.8 -0.9 hypothetical protein compare
PS417_05530 -0.8 -2.4 membrane protein compare
PS417_16990 -0.8 -2.9 acyl-CoA dehydrogenase compare
PS417_09695 -0.8 -1.5 hydrolase compare
PS417_04595 -0.8 -1.9 cell division protein MraZ compare
PS417_28075 -0.8 -3.3 phosphate ABC transporter permease compare
PS417_21840 -0.8 -2.0 chemotaxis protein compare
PS417_21870 -0.8 -2.0 glycerophosphodiester phosphodiesterase compare
PS417_10015 -0.8 -0.8 hypothetical protein compare
PS417_05985 -0.8 -1.0 chemotaxis protein CheY compare
PS417_24100 -0.8 -3.3 transcriptional regulator PdhR compare
PS417_19565 -0.8 -2.4 TetR family transcriptional regulator compare
PS417_12290 -0.8 -3.9 sulfite reductase compare
PS417_00405 -0.8 -4.0 DNA polymerase I compare
PS417_15390 -0.8 -1.5 hypothetical protein compare
PS417_27515 -0.8 -2.2 heme biosynthesis protein HemY compare
PS417_06680 -0.8 -3.6 nuclease PIN compare
PS417_13510 -0.8 -0.8 polyketide cyclase compare
PS417_06710 -0.8 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_04875 -0.8 -0.6 molybdenum cofactor biosynthesis protein MoaE compare
PS417_06835 -0.8 -1.9 phospholipase compare
PS417_27595 -0.8 -1.5 recombinase XerC compare
PS417_10695 -0.8 -2.0 decarboxylase compare
PS417_11185 -0.8 -1.8 dimethylallyltransferase compare
PS417_12120 -0.8 -2.8 IclR family transcriptional regulator compare
PS417_24935 -0.8 -0.8 hypothetical protein compare
PS417_09725 -0.8 -3.6 transporter compare
PS417_15885 -0.7 -1.1 GCN5 family acetyltransferase compare
PS417_23500 -0.7 -3.3 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
PS417_27865 -0.7 -1.4 LysR family transcriptional regulator compare
PS417_09325 -0.7 -2.0 peptidase S41 compare
PS417_07000 -0.7 -1.5 hypothetical protein compare
PS417_18885 -0.7 -1.5 GntR family transcriptional regulator compare
PS417_10655 -0.7 -1.5 LuxR family transcriptional regulator compare
PS417_01030 -0.7 -1.1 glutamine ABC transporter substrate-binding protein compare
PS417_21750 -0.7 -6.0 acetyl-CoA synthetase compare
PS417_20025 -0.7 -1.0 alpha-ribazole phosphatase compare
PS417_15895 -0.7 -1.3 iron dicitrate transport regulator FecR compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source Deoxyribonucleic acid from herring sperm in Pseudomonas simiae WCS417

For carbon source Deoxyribonucleic acid from herring sperm across organisms