Experiment set8IT008 for Pseudomonas simiae WCS417

Compare to:

2-Deoxy-D-ribonic acid lithium salt 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PS417_07245 -6.4 -3.3 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_00185 -6.0 -4.2 tryptophan synthase subunit beta compare
PS417_27040 -5.8 -2.9 3-phosphoglycerate dehydrogenase compare
PS417_18595 -5.6 -5.2 3-isopropylmalate dehydratase compare
PS417_01565 -5.5 -4.6 imidazole glycerol phosphate synthase compare
PS417_18560 -5.5 -9.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_24745 -5.2 -3.1 gamma-glutamyl phosphate reductase compare
PS417_25715 -5.1 -6.1 anthranilate phosphoribosyltransferase compare
PS417_23805 -5.0 -4.9 acetolactate synthase 3 regulatory subunit compare
PS417_25725 -4.9 -16.9 anthranilate synthase component I compare
PS417_23545 -4.9 -2.9 gamma-glutamyl kinase compare
PS417_02005 -4.9 -11.1 glutamate synthase compare
PS417_23800 -4.9 -12.0 ketol-acid reductoisomerase compare
PS417_26740 -4.8 -10.6 homoserine acetyltransferase compare
PS417_01575 -4.8 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18585 -4.6 -7.0 3-isopropylmalate dehydrogenase compare
PS417_22620 -4.6 -7.1 pyruvate kinase compare
PS417_25720 -4.5 -7.3 anthranilate synthase component II compare
PS417_08125 -4.5 -1.4 prephenate dehydratase compare
PS417_06375 -4.5 -1.4 deoxycytidine triphosphate deaminase compare
PS417_26745 -4.3 -4.9 methionine biosynthesis protein MetW compare
PS417_23810 -4.3 -12.2 acetolactate synthase 3 catalytic subunit compare
PS417_01850 -4.3 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_04420 -4.2 -10.0 histidinol dehydrogenase compare
PS417_07240 -4.1 -6.1 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_18530 -4.1 -4.7 O-succinylhomoserine sulfhydrylase compare
PS417_20985 -4.1 -4.3 porin compare
PS417_18600 -4.1 -2.6 isopropylmalate isomerase compare
PS417_02510 -4.0 -8.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_13970 -3.9 -9.8 glycerate kinase compare
PS417_20125 -3.9 -4.0 phosphoribosylglycinamide formyltransferase compare
PS417_01605 -3.9 -2.3 phosphoglycerate mutase compare
PS417_23995 -3.8 -1.1 preprotein translocase subunit SecG compare
PS417_12290 -3.8 -6.7 sulfite reductase compare
PS417_00180 -3.8 -3.8 tryptophan synthase subunit alpha compare
PS417_13975 -3.7 -4.2 CdaR family transcriptional regulator compare
PS417_01855 -3.7 -3.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_02000 -3.7 -13.8 glutamate synthase compare
PS417_22960 -3.6 -4.8 hypothetical protein compare
PS417_04415 -3.6 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_16465 -3.6 -8.4 sirohydrochlorin ferrochelatase compare
PS417_02415 -3.6 -6.7 phosphoserine phosphatase compare
PS417_07250 -3.5 -5.8 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) compare
PS417_23950 -3.5 -4.0 polynucleotide phosphorylase/polyadenylase compare
PS417_27195 -3.5 -1.4 N-acetylglutamate synthase compare
PS417_07265 -3.3 -12.2 2-deoxy-D-ribonate transporter 1 (from data) conserved
PS417_07260 -3.3 -6.6 2-deoxy-D-ribonate transporter 2 (from data) compare
PS417_01580 -3.3 -1.3 imidazole glycerol phosphate synthase compare
PS417_19835 -3.3 -2.0 flagellar biosynthesis protein FliS compare
PS417_24155 -3.3 -5.8 ATP-binding protein compare
PS417_23110 -3.2 -5.7 2-isopropylmalate synthase compare
PS417_10515 -3.2 -8.5 acetyl-CoA acetyltransferase conserved
PS417_25710 -3.1 -1.3 indole-3-glycerol-phosphate synthase compare
PS417_07255 -2.9 -5.5 Deoxyribonolactonase (from data) compare
PS417_07470 -2.9 -1.6 hypothetical protein compare
PS417_07640 -2.8 -2.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_05595 -2.8 -7.5 ornithine carbamoyltransferase compare
PS417_26890 -2.8 -8.1 dihydroxy-acid dehydratase compare
PS417_27795 -2.7 -1.1 orotate phosphoribosyltransferase compare
PS417_27835 -2.7 -5.5 endoribonuclease compare
PS417_26730 -2.6 -1.1 pyrroline-5-carboxylate reductase compare
PS417_26995 -2.5 -8.1 phosphoserine phosphatase compare
PS417_10520 -2.5 -4.0 succinyl-CoA:3-ketoacid-CoA transferase compare
PS417_04410 -2.5 -2.9 hypothetical protein compare
PS417_12855 -2.2 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_00065 -2.1 -1.8 3-methyladenine DNA glycosylase compare
PS417_14980 -2.1 -1.4 universal stress protein UspA compare
PS417_00650 -2.1 -1.2 LysR family transcriptional regulator compare
PS417_08245 -2.0 -1.4 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_21125 -1.9 -7.7 phosphoadenosine phosphosulfate reductase compare
PS417_21705 -1.9 -4.0 arginine N-succinyltransferase compare
PS417_19805 -1.9 -4.9 flagellar M-ring protein FliF compare
PS417_27435 -1.8 -6.3 polyphosphate kinase compare
PS417_21480 -1.8 -1.8 23S rRNA pseudouridylate synthase compare
PS417_12160 -1.7 -3.0 Fis family transcriptional regulator compare
PS417_09325 -1.7 -3.3 peptidase S41 compare
PS417_08155 -1.7 -1.5 integration host factor subunit beta compare
PS417_26770 -1.6 -2.5 tRNA (guanine-N7)-methyltransferase compare
PS417_17070 -1.6 -1.9 RNA polymerase subunit sigma-24 compare
PS417_01995 -1.6 -2.6 hypothetical protein compare
PS417_10530 -1.5 -5.6 LysR family transcriptional regulator compare
PS417_01570 -1.5 -0.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_21625 -1.5 -1.0 DNA-binding protein compare
PS417_01915 -1.5 -1.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_03815 -1.5 -2.5 DNA transporter compare
PS417_18690 -1.4 -2.7 aromatic amino acid aminotransferase compare
PS417_21700 -1.4 -3.8 arginine N-succinyltransferase compare
PS417_23580 -1.4 -1.3 peptidylprolyl isomerase compare
PS417_20160 -1.4 -4.1 cysteine synthase compare
PS417_28220 -1.4 -1.6 LysR family transcriptional regulator compare
PS417_10015 -1.3 -1.1 hypothetical protein compare
PS417_00945 -1.3 -3.9 sulfate ABC transporter ATP-binding protein compare
PS417_08580 -1.3 -4.6 histidine kinase compare
PS417_16990 -1.3 -4.1 acyl-CoA dehydrogenase compare
PS417_16815 -1.3 -2.6 acyl-CoA dehydrogenase compare
PS417_11440 -1.3 -1.5 hypothetical protein compare
PS417_26040 -1.3 -2.9 malate synthase compare
PS417_08740 -1.3 -1.7 ribose-phosphate pyrophosphokinase compare
PS417_11015 -1.3 -2.3 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
PS417_19755 -1.2 -1.7 flagellar motor switch protein FliM compare
PS417_05570 -1.2 -2.6 DeoR faimly transcriptional regulator compare
PS417_05635 -1.2 -3.7 membrane protein compare
PS417_19800 -1.2 -1.6 flagellar motor switch protein FliG compare
PS417_20310 -1.2 -2.9 hypothetical protein compare
PS417_25225 -1.2 -1.7 MFS transporter compare
PS417_19840 -1.2 -6.1 flagellar cap protein FliD compare
PS417_26990 -1.2 -1.1 RNA pyrophosphohydrolase compare
PS417_24560 -1.2 -2.5 ferrous iron transporter compare
PS417_00355 -1.2 -3.2 metal ABC transporter permease compare
PS417_16490 -1.2 -1.7 cell division protein FtsK compare
PS417_28070 -1.2 -4.3 phosphate ABC transporter ATP-binding protein compare
PS417_21555 -1.2 -6.1 flagellar hook protein FlgE compare
PS417_03705 -1.2 -2.3 2-alkenal reductase compare
PS417_17780 -1.2 -1.0 Ais protein compare
PS417_10390 -1.2 -1.6 RNA polymerase subunit sigma24 compare
PS417_21595 -1.2 -2.5 flagellar biosynthesis protein FlgN compare
PS417_22520 -1.1 -1.6 histidine kinase compare
PS417_06600 -1.1 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_19305 -1.1 -2.2 acireductone dioxygenase compare
PS417_21655 -1.1 -0.9 aspartate kinase compare
PS417_22795 -1.1 -2.0 exclusion suppressor FxsA compare
PS417_17645 -1.1 -1.1 RND transporter compare
PS417_15215 -1.1 -1.3 protein activator of alkane oxidation PraA compare
PS417_08150 -1.1 -2.3 hypothetical protein compare
PS417_17755 -1.1 -1.8 hypothetical protein compare
PS417_21870 -1.1 -1.6 glycerophosphodiester phosphodiesterase compare
PS417_28080 -1.1 -7.5 phosphate ABC transporter permease compare
PS417_16055 -1.1 -1.7 biopolymer transporter TolR compare
PS417_17805 -1.1 -1.7 microcin B17 processing protein McbC compare
PS417_05010 -1.1 -1.6 IclR family transcriptional regulator compare
PS417_27300 -1.1 -1.0 cell division protein ZapA compare
PS417_18905 -1.1 -2.3 acyl-CoA dehydrogenase compare
PS417_04375 -1.1 -1.8 ABC transporter ATP-binding protein compare
PS417_10425 -1.0 -1.2 hypothetical protein compare
PS417_19880 -1.0 -3.9 flagellar basal body L-ring protein compare
PS417_18590 -1.0 -1.8 SAM-dependent methyltransferase compare
PS417_08225 -1.0 -3.2 acetolactate synthase compare
PS417_24430 -1.0 -1.0 3-dehydroquinate dehydratase compare
PS417_00045 -1.0 -1.8 glycerol acyltransferase compare
PS417_20480 -1.0 -1.6 hypothetical protein compare
PS417_27010 -1.0 -5.6 threonine dehydratase compare
PS417_19660 -1.0 -3.3 cobalamin biosynthesis protein CobQ compare
PS417_19645 -1.0 -1.6 chemotaxis protein compare
PS417_19860 -1.0 -6.3 flagellar hook protein FlgL compare
PS417_18310 -1.0 -1.9 hypothetical protein compare
PS417_17340 -1.0 -2.8 GNAT family acetyltransferase compare
PS417_27870 -1.0 -2.6 ATP-dependent DNA helicase RecG compare
PS417_09605 -0.9 -1.6 glycosyl transferase compare
PS417_26850 -0.9 -0.9 twin-arginine translocation pathway signal protein compare
PS417_06680 -0.9 -4.8 nuclease PIN compare
PS417_09245 -0.9 -1.0 recombinase RdgC compare
PS417_01920 -0.9 -1.4 ATP-dependent protease subunit HslV compare
PS417_05985 -0.9 -1.3 chemotaxis protein CheY compare
PS417_07170 -0.9 -1.9 hypothetical protein compare
PS417_03260 -0.9 -0.8 5S ribosomal RNA compare
PS417_19650 -0.9 -1.9 chemotaxis protein CheW compare
PS417_22170 -0.9 -3.4 acetyltransferase compare
PS417_20620 -0.9 -3.0 glycosyl transferase family 2 compare
PS417_18235 -0.9 -1.6 nitrile hydratase compare
PS417_01750 -0.9 -1.9 histidine ammonia-lyase compare
PS417_05165 -0.9 -2.1 cytosol aminopeptidase compare
PS417_14915 -0.9 -1.6 host specificity protein compare
PS417_26695 -0.9 -1.1 uracil phosphoribosyltransferase compare
PS417_23900 -0.9 -4.8 poly(A) polymerase compare
PS417_22375 -0.9 -0.8 cold-shock protein compare
PS417_02555 -0.9 -5.6 exoribonuclease R compare
PS417_14070 -0.9 -1.4 hypothetical protein compare
PS417_23910 -0.9 -4.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_24465 -0.9 -3.8 metallopeptidase compare
PS417_01560 -0.9 -1.1 imidazoleglycerol-phosphate dehydratase compare
PS417_05840 -0.9 -1.9 LuxR family transcriptional regulator compare
PS417_21065 -0.9 -1.4 3-methylitaconate isomerase compare
PS417_19865 -0.9 -4.8 flagellar hook protein FlgK compare
PS417_11825 -0.9 -1.1 transcriptional regulator compare
PS417_13245 -0.8 -1.9 saccharopine dehydrogenase compare
PS417_05065 -0.8 -1.2 hypothetical protein compare
PS417_00295 -0.8 -3.8 hypothetical protein compare
PS417_17675 -0.8 -1.2 ABC transporter compare
PS417_12245 -0.8 -1.6 GNAT family acetyltransferase compare
PS417_27935 -0.8 -0.9 type VI secretion protein compare
PS417_22840 -0.8 -1.1 tRNA-Met compare
PS417_17450 -0.8 -2.4 amino acid ABC transporter substrate-binding protein compare
PS417_16085 -0.8 -1.9 LysR family transcriptional regulator compare
PS417_15285 -0.8 -0.7 type VI secretion protein compare
PS417_19850 -0.8 -3.6 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_15085 -0.8 -2.3 ATPase AAA compare
PS417_08515 -0.8 -1.4 hypothetical protein compare
PS417_22445 -0.8 -2.9 ATP-dependent DNA helicase RuvB compare
PS417_15885 -0.8 -0.9 GCN5 family acetyltransferase compare
PS417_03165 -0.8 -2.2 hypothetical protein compare
PS417_08195 -0.8 -3.8 hypothetical protein compare
PS417_28075 -0.8 -3.8 phosphate ABC transporter permease compare
PS417_12870 -0.8 -0.8 enoyl-CoA hydratase compare
PS417_19745 -0.8 -3.4 flagellar assembly protein FliO compare
PS417_14845 -0.8 -3.1 endoribonuclease L-PSP compare
PS417_06245 -0.8 -1.7 zinc metallopeptidase RseP compare
PS417_01710 -0.8 -2.0 histidine utilization repressor compare
PS417_09330 -0.8 -1.3 NAD(P)H-quinone oxidoreductase compare
PS417_04760 -0.8 -3.7 hypothetical protein compare
PS417_13510 -0.8 -0.7 polyketide cyclase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source 2-Deoxy-D-ribonic acid lithium salt in Pseudomonas simiae WCS417

For carbon source 2-Deoxy-D-ribonic acid lithium salt across organisms