Experiment set8IT007 for Pseudomonas simiae WCS417

Compare to:

2'-Deoxyinosine 5 mM carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18595 -4.8 -3.0 3-isopropylmalate dehydratase compare
PS417_01575 -3.9 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_26740 -3.9 -6.9 homoserine acetyltransferase compare
PS417_01915 -3.8 -1.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_21395 -3.8 -9.7 radical SAM protein compare
PS417_24655 -3.7 -3.6 hypothetical protein compare
PS417_08245 -3.7 -1.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_13510 -3.5 -1.1 polyketide cyclase compare
PS417_18530 -3.3 -3.5 O-succinylhomoserine sulfhydrylase compare
PS417_04415 -3.3 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_20885 -3.3 -5.5 Xanthine dehydrogenase (EC 1.17.1.4) (from data) compare
PS417_04865 -3.2 -1.6 molybdenum cofactor biosynthesis protein MoaC compare
PS417_06375 -3.2 -1.0 deoxycytidine triphosphate deaminase compare
PS417_06075 -3.2 -1.5 hypothetical protein compare
PS417_00650 -3.2 -1.0 LysR family transcriptional regulator compare
PS417_17795 -3.1 -1.7 ABC transporter permease compare
PS417_02510 -3.0 -6.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_08810 -2.9 -8.7 glyoxylate carboligase (EC 4.1.1.47) (from data) compare
PS417_01565 -2.9 -2.7 imidazole glycerol phosphate synthase compare
PS417_19430 -2.8 -1.7 ureidoglycolate hydrolase compare
PS417_20890 -2.8 -9.9 Xanthine dehydrogenase (EC 1.17.1.4) (from data) compare
PS417_15770 -2.8 -1.3 pyridoxine 5'-phosphate oxidase compare
PS417_11615 -2.8 -1.3 urea ABC transporter ATP-binding protein compare
PS417_20895 -2.8 -8.6 molybdenum cofactor sulfurylase compare
PS417_19425 -2.8 -0.9 allantoicase compare
PS417_07245 -2.8 -2.6 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_19415 -2.8 -2.2 allantoinase compare
PS417_01095 -2.7 -1.5 amino acid ABC transporter ATP-binding protein compare
PS417_14940 -2.7 -1.5 LysR family transcriptional regulator compare
PS417_19435 -2.6 -4.7 urate hydroxylase (1.7.3.3) (from data) compare
PS417_18600 -2.6 -2.3 isopropylmalate isomerase compare
PS417_04420 -2.6 -6.9 histidinol dehydrogenase compare
PS417_14125 -2.5 -2.8 molybdenum ABC transporter ATP-binding protein compare
PS417_00180 -2.5 -1.7 tryptophan synthase subunit alpha compare
PS417_04875 -2.5 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_24155 -2.5 -2.4 ATP-binding protein compare
PS417_23995 -2.5 -0.8 preprotein translocase subunit SecG compare
PS417_17675 -2.4 -1.6 ABC transporter compare
PS417_18560 -2.4 -5.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23810 -2.4 -8.6 acetolactate synthase 3 catalytic subunit compare
PS417_17930 -2.4 -2.1 aldehyde dehydrogenase compare
PS417_27535 -2.4 -5.1 chemotaxis protein CheY compare
PS417_23170 -2.3 -1.5 FeS assembly protein IscX compare
PS417_27040 -2.3 -1.8 3-phosphoglycerate dehydrogenase compare
PS417_10095 -2.3 -2.1 hypothetical protein compare
PS417_23805 -2.3 -2.8 acetolactate synthase 3 regulatory subunit compare
PS417_01855 -2.3 -1.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_19600 -2.3 -1.0 exonuclease compare
PS417_16720 -2.3 -1.0 membrane protein compare
PS417_26470 -2.3 -1.5 cytochrome C compare
PS417_16510 -2.3 -2.6 Clp protease ClpX compare
PS417_19420 -2.3 -3.1 OHCU decarboxylase compare
PS417_24745 -2.2 -3.7 gamma-glutamyl phosphate reductase compare
PS417_26890 -2.2 -4.6 dihydroxy-acid dehydratase compare
PS417_03525 -2.2 -1.4 hypothetical protein compare
PS417_00185 -2.2 -2.5 tryptophan synthase subunit beta compare
PS417_02000 -2.2 -7.3 glutamate synthase compare
PS417_23800 -2.2 -7.8 ketol-acid reductoisomerase compare
PS417_19395 -2.2 -6.4 guanine permease compare
PS417_22520 -2.2 -1.3 histidine kinase compare
PS417_26985 -2.2 -3.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_23770 -2.1 -1.4 exodeoxyribonuclease V subunit alpha compare
PS417_17405 -2.0 -1.8 AraC family transcriptional regulator compare
PS417_26725 -2.0 -3.6 hypothetical protein compare
PS417_00175 -2.0 -0.9 CigR compare
PS417_14710 -2.0 -1.5 isochorismatase compare
PS417_16990 -2.0 -4.1 acyl-CoA dehydrogenase compare
PS417_02005 -2.0 -5.7 glutamate synthase compare
PS417_20985 -2.0 -2.4 porin compare
PS417_01580 -1.9 -0.8 imidazole glycerol phosphate synthase compare
PS417_11865 -1.9 -2.8 xylose isomerase compare
PS417_08220 -1.9 -0.6 epimerase compare
PS417_11925 -1.9 -1.8 hypothetical protein compare
PS417_23110 -1.9 -7.5 2-isopropylmalate synthase compare
PS417_23545 -1.9 -1.4 gamma-glutamyl kinase compare
PS417_19095 -1.9 -1.2 hypothetical protein compare
PS417_01560 -1.9 -1.3 imidazoleglycerol-phosphate dehydratase compare
PS417_06540 -1.9 -1.8 membrane protein compare
PS417_26745 -1.9 -3.5 methionine biosynthesis protein MetW compare
PS417_00550 -1.8 -0.8 hypothetical protein compare
PS417_08670 -1.8 -2.7 molybdopterin biosynthesis protein B compare
PS417_27475 -1.8 -1.6 membrane protein compare
PS417_07260 -1.8 -5.7 2-deoxy-D-ribonate transporter 2 (from data) compare
PS417_16515 -1.8 -2.1 Clp protease ClpS compare
PS417_18435 -1.8 -2.0 hypothetical protein compare
PS417_27595 -1.8 -1.9 recombinase XerC compare
PS417_25710 -1.8 -0.8 indole-3-glycerol-phosphate synthase compare
PS417_24100 -1.8 -4.7 transcriptional regulator PdhR compare
PS417_27870 -1.8 -2.7 ATP-dependent DNA helicase RecG compare
PS417_02375 -1.8 -6.4 hypothetical protein compare
PS417_21015 -1.7 -1.9 EstX protein compare
PS417_22450 -1.7 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_10600 -1.7 -1.3 hypothetical protein compare
PS417_00945 -1.7 -3.9 sulfate ABC transporter ATP-binding protein compare
PS417_08580 -1.7 -4.6 histidine kinase compare
PS417_25720 -1.7 -4.0 anthranilate synthase component II compare
PS417_01510 -1.7 -1.3 hypothetical protein compare
PS417_16005 -1.7 -2.2 ATPase compare
PS417_13055 -1.7 -1.8 aminotransferase compare
PS417_20950 -1.6 -2.4 hypothetical protein compare
PS417_21360 -1.6 -0.9 termination factor Rho compare
PS417_26695 -1.6 -0.6 uracil phosphoribosyltransferase compare
PS417_21125 -1.6 -5.3 phosphoadenosine phosphosulfate reductase compare
PS417_04375 -1.6 -2.2 ABC transporter ATP-binding protein compare
PS417_17565 -1.6 -1.4 branched-chain amino acid aminotransferase compare
PS417_08805 -1.6 -4.0 hydroxypyruvate isomerase compare
PS417_24355 -1.6 -3.3 MFS transporter compare
PS417_21625 -1.6 -0.7 DNA-binding protein compare
PS417_28325 -1.6 -1.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_12660 -1.6 -1.0 hypothetical protein compare
PS417_21425 -1.6 -1.4 4-amino-4-deoxychorismate lyase compare
PS417_16195 -1.6 -0.9 AraC family transcriptional regulator compare
PS417_20205 -1.6 -3.1 LysR family transcriptional regulator compare
PS417_17780 -1.5 -0.6 Ais protein compare
PS417_01950 -1.5 -3.2 malate dehydrogenase compare
PS417_25715 -1.5 -2.8 anthranilate phosphoribosyltransferase compare
PS417_26990 -1.5 -1.0 RNA pyrophosphohydrolase compare
PS417_28230 -1.5 -2.0 transcriptional regulator compare
PS417_15975 -1.5 -1.2 glutamate carboxypeptidase compare
PS417_03670 -1.5 -4.5 MerR family transcriptional regulator compare
PS417_10125 -1.5 -2.1 hypothetical protein compare
PS417_25725 -1.5 -6.3 anthranilate synthase component I compare
PS417_22375 -1.5 -0.8 cold-shock protein compare
PS417_12120 -1.5 -3.7 IclR family transcriptional regulator compare
PS417_20055 -1.5 -1.7 cob(II)yrinic acid a,c-diamide reductase compare
PS417_19065 -1.5 -0.7 monooxygenase compare
PS417_14120 -1.5 -4.5 molybdenum ABC transporter permease compare
PS417_27875 -1.5 -3.3 histidine kinase compare
PS417_16680 -1.5 -2.1 MFS transporter compare
PS417_15125 -1.5 -1.6 glutathione S-transferase compare
PS417_00465 -1.4 -2.9 hypothetical protein compare
PS417_15100 -1.4 -2.1 BatB protein compare
PS417_00495 -1.4 -1.9 ABC transporter permease compare
PS417_11500 -1.4 -3.4 hypothetical protein compare
PS417_23490 -1.4 -0.6 dihydrofolate reductase compare
PS417_22570 -1.4 -0.6 H-NS histone compare
PS417_19550 -1.4 -2.8 thioesterase compare
PS417_04975 -1.4 -3.0 response regulator receiver protein compare
PS417_20635 -1.4 -0.6 ABC transporter ATP-binding protein compare
PS417_19975 -1.4 -1.3 hypothetical protein compare
PS417_19555 -1.4 -2.0 RNA polymerase sigma70 compare
PS417_23315 -1.4 -0.6 transcriptional regulator compare
PS417_24115 -1.4 -1.2 hypothetical protein compare
PS417_00755 -1.4 -0.6 biofilm PGA synthesis protein PgaD compare
PS417_08090 -1.4 -0.6 3-oxoacyl-ACP reductase compare
PS417_25790 -1.4 -3.0 aminoglycoside phosphotransferase compare
PS417_07640 -1.4 -1.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_07375 -1.4 -4.1 ribonuclease D compare
PS417_11440 -1.4 -1.4 hypothetical protein compare
PS417_15710 -1.4 -1.6 nitrate reductase compare
PS417_26050 -1.3 -3.0 response regulator compare
PS417_22445 -1.3 -3.2 ATP-dependent DNA helicase RuvB compare
PS417_04180 -1.3 -3.0 GntR family transcriptional regulator compare
PS417_26420 -1.3 -1.1 hypothetical protein compare
PS417_02175 -1.3 -2.0 transcriptional regulator compare
PS417_25905 -1.3 -1.9 AsnC family transcriptional regulator compare
PS417_07255 -1.3 -3.1 Deoxyribonolactonase (from data) compare
PS417_04390 -1.3 -3.3 toluene tolerance protein compare
PS417_01375 -1.3 -1.4 hypothetical protein compare
PS417_05820 -1.3 -1.6 recombinase RecX compare
PS417_18585 -1.3 -2.9 3-isopropylmalate dehydrogenase compare
PS417_18425 -1.3 -1.2 sporulation protein compare
PS417_02805 -1.3 -0.6 urease subunit gamma compare
PS417_23755 -1.3 -1.5 membrane protein compare
PS417_13620 -1.3 -1.1 thermostable hemolysin compare
PS417_12650 -1.3 -1.6 magnesium transporter compare
PS417_13305 -1.3 -0.8 hypothetical protein compare
PS417_27605 -1.3 -3.1 hypothetical protein compare
PS417_05985 -1.3 -1.2 chemotaxis protein CheY compare
PS417_14245 -1.3 -1.2 hypothetical protein compare
PS417_27815 -1.3 -0.7 hypothetical protein compare
PS417_10305 -1.3 -1.5 hypothetical protein compare
PS417_09655 -1.2 -1.3 RNA polymerase sigma factor compare
PS417_07795 -1.2 -3.0 hypothetical protein compare
PS417_16465 -1.2 -4.4 sirohydrochlorin ferrochelatase compare
PS417_23405 -1.2 -1.8 transcriptional regulator compare
PS417_24525 -1.2 -1.5 nuclease compare
PS417_21070 -1.2 -1.3 aconitate hydratase compare
PS417_18420 -1.2 -2.1 deoxyribonuclease compare
PS417_06835 -1.2 -1.9 phospholipase compare
PS417_23205 -1.2 -2.8 transcriptional regulator compare
PS417_07240 -1.2 -1.6 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_12280 -1.2 -1.3 MerR family transcriptional regulator compare
PS417_10335 -1.2 -1.0 peroxiredoxin compare
PS417_07875 -1.2 -0.5 hypothetical protein compare
PS417_02890 -1.2 -3.2 cobalt-precorrin-6X reductase compare
PS417_01425 -1.2 -2.1 AraC family transcriptional regulator compare
PS417_08225 -1.2 -2.4 acetolactate synthase compare
PS417_17830 -1.2 -1.5 4-hydroxyphenylacetate isomerase compare
PS417_17645 -1.2 -0.9 RND transporter compare
PS417_14920 -1.2 -3.8 CoA-transferase compare
PS417_14965 -1.2 -3.4 transcriptional regulator compare
PS417_04090 -1.2 -1.7 hypothetical protein compare
PS417_17530 -1.2 -3.6 ArsR family transcriptional regulator compare
PS417_22500 -1.2 -5.9 porin compare
PS417_08125 -1.2 -0.6 prephenate dehydratase compare
PS417_05475 -1.2 -2.7 arginase compare
PS417_18860 -1.2 -3.2 transcriptional regulator compare
PS417_24575 -1.2 -0.9 hypothetical protein compare
PS417_17155 -1.2 -1.4 cytochrome B561 compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source 2'-Deoxyinosine in Pseudomonas simiae WCS417

For carbon source 2'-Deoxyinosine across organisms