Experiment set8IT005 for Pseudomonas simiae WCS417

Compare to:

2-Deoxy-D-Ribose 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PS417_20985 -5.8 -4.0 porin compare
PS417_07240 -5.7 -3.6 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_18600 -5.4 -3.3 isopropylmalate isomerase compare
PS417_04415 -5.0 -8.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18560 -4.9 -10.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23545 -4.9 -2.8 gamma-glutamyl kinase compare
PS417_08155 -4.8 -3.4 integration host factor subunit beta compare
PS417_13975 -4.8 -5.5 CdaR family transcriptional regulator compare
PS417_04180 -4.8 -5.5 GntR family transcriptional regulator compare
PS417_23810 -4.7 -14.7 acetolactate synthase 3 catalytic subunit compare
PS417_24745 -4.7 -5.0 gamma-glutamyl phosphate reductase compare
PS417_01565 -4.6 -5.4 imidazole glycerol phosphate synthase compare
PS417_04420 -4.6 -12.8 histidinol dehydrogenase compare
PS417_07260 -4.6 -13.0 2-deoxy-D-ribonate transporter 2 (from data) compare
PS417_27040 -4.5 -4.1 3-phosphoglycerate dehydrogenase compare
PS417_25725 -4.5 -19.5 anthranilate synthase component I compare
PS417_08125 -4.5 -1.4 prephenate dehydratase compare
PS417_06375 -4.5 -1.4 deoxycytidine triphosphate deaminase compare
PS417_18585 -4.3 -5.6 3-isopropylmalate dehydrogenase compare
PS417_07245 -4.3 -2.4 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_18530 -4.2 -7.2 O-succinylhomoserine sulfhydrylase compare
PS417_23805 -4.2 -6.0 acetolactate synthase 3 regulatory subunit compare
PS417_18595 -4.2 -5.0 3-isopropylmalate dehydratase compare
PS417_23800 -4.1 -10.0 ketol-acid reductoisomerase compare
PS417_24155 -4.0 -5.5 ATP-binding protein compare
PS417_22450 -4.0 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_26745 -3.9 -5.6 methionine biosynthesis protein MetW compare
PS417_00185 -3.9 -4.6 tryptophan synthase subunit beta compare
PS417_16465 -3.8 -7.8 sirohydrochlorin ferrochelatase compare
PS417_13970 -3.8 -8.2 glycerate kinase conserved
PS417_23995 -3.7 -1.1 preprotein translocase subunit SecG compare
PS417_02005 -3.6 -11.9 glutamate synthase compare
PS417_07250 -3.5 -4.0 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) conserved
PS417_01575 -3.5 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02510 -3.5 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_21490 -3.5 -7.6 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
PS417_07265 -3.4 -9.6 2-deoxy-D-ribonate transporter 1 (from data) compare
PS417_20160 -3.3 -4.6 cysteine synthase compare
PS417_26740 -3.3 -7.3 homoserine acetyltransferase compare
PS417_25720 -3.3 -6.8 anthranilate synthase component II compare
PS417_10890 -3.3 -4.6 Deoxyribose 1-dehydrogenase, alpha subunit (from data) compare
PS417_05975 -3.2 -0.9 chemotaxis protein CheW compare
PS417_07255 -3.2 -5.6 Deoxyribonolactonase (from data) conserved
PS417_26985 -3.2 -4.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_10885 -3.0 -9.4 Deoxyribose 1-dehydrogenase, beta subunit (from data) compare
PS417_23770 -3.0 -3.3 exodeoxyribonuclease V subunit alpha compare
PS417_01605 -3.0 -2.2 phosphoglycerate mutase compare
PS417_25710 -3.0 -1.3 indole-3-glycerol-phosphate synthase compare
PS417_21395 -3.0 -8.6 radical SAM protein compare
PS417_04865 -2.9 -3.4 molybdenum cofactor biosynthesis protein MoaC compare
PS417_02000 -2.9 -11.4 glutamate synthase compare
PS417_01855 -2.8 -1.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_23110 -2.8 -5.9 2-isopropylmalate synthase compare
PS417_01850 -2.6 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_09695 -2.6 -1.8 hydrolase compare
PS417_12290 -2.6 -6.2 sulfite reductase compare
PS417_25715 -2.5 -3.2 anthranilate phosphoribosyltransferase compare
PS417_26890 -2.5 -5.3 dihydroxy-acid dehydratase compare
PS417_26730 -2.5 -1.0 pyrroline-5-carboxylate reductase compare
PS417_03100 -2.4 -1.0 pilus assembly protein compare
PS417_04875 -2.4 -1.6 molybdenum cofactor biosynthesis protein MoaE compare
PS417_08025 -2.3 -1.7 acetylornithine aminotransferase compare
PS417_23950 -2.3 -3.0 polynucleotide phosphorylase/polyadenylase compare
PS417_16990 -2.2 -7.2 acyl-CoA dehydrogenase compare
PS417_02415 -2.2 -6.0 phosphoserine phosphatase compare
PS417_08730 -2.1 -2.8 cytochrome C compare
PS417_16490 -2.1 -2.9 cell division protein FtsK compare
PS417_22445 -2.1 -3.9 ATP-dependent DNA helicase RuvB compare
PS417_27605 -2.1 -4.4 hypothetical protein compare
PS417_08670 -2.1 -4.1 molybdopterin biosynthesis protein B compare
PS417_27875 -2.1 -7.2 histidine kinase compare
PS417_00180 -2.1 -3.0 tryptophan synthase subunit alpha compare
PS417_21035 -2.0 -6.6 multidrug transporter compare
PS417_23375 -2.0 -2.2 cytochrome C oxidase compare
PS417_17705 -1.9 -2.0 LacI family transcriptional regulator compare
PS417_10880 -1.9 -7.3 cytochrome c component of deoxyribose dehydrogenase (from data) compare
PS417_04595 -1.9 -3.1 cell division protein MraZ compare
PS417_21495 -1.9 -2.2 lipoprotein compare
PS417_09705 -1.9 -2.5 hypothetical protein compare
PS417_10515 -1.8 -4.0 acetyl-CoA acetyltransferase compare
PS417_16195 -1.8 -1.4 AraC family transcriptional regulator compare
PS417_07615 -1.8 -4.5 TetR family transcriptional regulator compare
PS417_01560 -1.8 -2.8 imidazoleglycerol-phosphate dehydratase compare
PS417_09725 -1.8 -6.4 transporter compare
PS417_05595 -1.8 -7.4 ornithine carbamoyltransferase compare
PS417_20125 -1.8 -4.4 phosphoribosylglycinamide formyltransferase compare
PS417_16510 -1.7 -2.9 Clp protease ClpX compare
PS417_27195 -1.7 -0.9 N-acetylglutamate synthase compare
PS417_06540 -1.7 -1.7 membrane protein compare
PS417_03455 -1.6 -1.3 type III secretion protein compare
PS417_01580 -1.6 -1.6 imidazole glycerol phosphate synthase compare
PS417_22670 -1.6 -6.1 AraC family transcriptional regulator compare
PS417_01710 -1.6 -3.8 histidine utilization repressor compare
PS417_11925 -1.6 -2.1 hypothetical protein compare
PS417_21870 -1.6 -1.9 glycerophosphodiester phosphodiesterase compare
PS417_22520 -1.6 -2.3 histidine kinase compare
PS417_17980 -1.5 -2.7 ABC transporter permease compare
PS417_22385 -1.5 -7.3 quinolinate synthase A compare
PS417_14940 -1.5 -1.8 LysR family transcriptional regulator compare
PS417_27795 -1.5 -0.8 orotate phosphoribosyltransferase compare
PS417_27085 -1.4 -2.5 AraC family transcriptional regulator compare
PS417_01095 -1.4 -1.4 amino acid ABC transporter ATP-binding protein compare
PS417_10995 -1.4 -2.8 GntR family transcriptional regulator compare
PS417_06365 -1.4 -5.1 RNA polymerase sigma factor compare
PS417_13075 -1.4 -1.4 hypothetical protein compare
PS417_23775 -1.4 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_22570 -1.4 -0.8 H-NS histone compare
PS417_26390 -1.3 -1.8 acyltransferase compare
PS417_26260 -1.3 -1.7 hypothetical protein compare
PS417_10520 -1.3 -3.2 succinyl-CoA:3-ketoacid-CoA transferase compare
PS417_21705 -1.3 -4.4 arginine N-succinyltransferase compare
PS417_10015 -1.3 -1.1 hypothetical protein compare
PS417_02225 -1.3 -1.7 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_04375 -1.3 -3.1 ABC transporter ATP-binding protein compare
PS417_16520 -1.3 -1.9 cold-shock protein compare
PS417_01285 -1.3 -1.7 haloacid dehalogenase compare
PS417_01400 -1.2 -1.6 hypothetical protein compare
PS417_15875 -1.2 -1.2 LuxR family transcriptional regulator compare
PS417_01950 -1.2 -5.3 malate dehydrogenase compare
PS417_27610 -1.2 -3.0 hypothetical protein compare
PS417_27290 -1.2 -1.2 hypothetical protein compare
PS417_05815 -1.2 -3.0 recombinase RecA compare
PS417_17795 -1.2 -1.6 ABC transporter permease compare
PS417_24705 -1.2 -2.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_22980 -1.1 -3.0 GntR family transcriptional regulator compare
PS417_02720 -1.1 -0.8 TetR family transcriptional regulator compare
PS417_07700 -1.1 -1.2 chromosome partitioning protein ParA compare
PS417_05840 -1.1 -1.7 LuxR family transcriptional regulator compare
PS417_26175 -1.1 -0.7 sarcosine oxidase subunit gamma compare
PS417_22300 -1.1 -1.1 LTXXQ domain protein compare
PS417_23150 -1.1 -1.8 Cro/Cl family transcriptional regulator compare
PS417_04590 -1.1 -3.5 methyltransferase compare
PS417_13710 -1.1 -2.1 hypothetical protein compare
PS417_27865 -1.1 -2.4 LysR family transcriptional regulator compare
PS417_16715 -1.1 -1.2 DoxX family protein compare
PS417_19305 -1.1 -1.9 acireductone dioxygenase compare
PS417_22375 -1.1 -0.9 cold-shock protein compare
PS417_12390 -1.1 -1.4 hypothetical protein compare
PS417_06370 -1.1 -1.6 cold-shock protein compare
PS417_19600 -1.0 -0.8 exonuclease compare
PS417_04835 -1.0 -3.0 hemolysin D compare
PS417_11845 -1.0 -3.5 RpiR family transcriptional regulator compare
PS417_23380 -1.0 -1.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_24835 -1.0 -2.6 hypothetical protein compare
PS417_13800 -1.0 -2.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_23475 -1.0 -1.2 hypothetical protein compare
PS417_03925 -1.0 -2.5 nicotinate-nucleotide pyrophosphorylase compare
PS417_24525 -1.0 -1.9 nuclease compare
PS417_14655 -1.0 -1.0 lysine transporter LysE compare
PS417_17240 -1.0 -3.0 trigger factor compare
PS417_07870 -1.0 -1.2 hypothetical protein compare
PS417_01570 -1.0 -1.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_08580 -1.0 -3.6 histidine kinase compare
PS417_07115 -1.0 -5.6 L-aspartate oxidase compare
PS417_15535 -1.0 -2.7 oxidoreductase compare
PS417_00660 -1.0 -2.0 DSBA oxidoreductase compare
PS417_17000 -1.0 -1.6 MerR family transcriptional regulator compare
PS417_15775 -1.0 -1.5 short-chain dehydrogenase compare
PS417_10025 -0.9 -1.2 bacteriophage lambda NinG family protein compare
PS417_06895 -0.9 -1.8 DNA-binding protein compare
PS417_03815 -0.9 -1.4 DNA transporter compare
PS417_12310 -0.9 -4.5 methionine synthase compare
PS417_13790 -0.9 -3.3 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_02950 -0.9 -1.8 tRNA-dihydrouridine synthase B compare
PS417_23105 -0.9 -1.2 hypothetical protein compare
PS417_06165 -0.9 -3.2 thiamine biosynthesis protein ThiF compare
PS417_17160 -0.9 -2.0 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_19065 -0.9 -0.6 monooxygenase compare
PS417_18105 -0.9 -0.8 iron-dicitrate transporter substrate-binding subunit compare
PS417_17885 -0.9 -1.8 moaF compare
PS417_21760 -0.9 -1.1 hypothetical protein compare
PS417_04585 -0.9 -0.8 hypothetical protein compare
PS417_10675 -0.9 -0.6 TetR family transcriptional regulator compare
PS417_27035 -0.9 -1.7 FAD-linked oxidase compare
PS417_09600 -0.9 -2.6 glycosyl transferase family 1 compare
PS417_12205 -0.9 -3.6 hypothetical protein compare
PS417_11400 -0.9 -1.1 phosphoglycerate mutase compare
PS417_20690 -0.9 -2.6 chemotaxis protein compare
PS417_19285 -0.9 -1.1 ankyrin compare
PS417_12695 -0.9 -3.8 mannitol dehydrogenase compare
PS417_08220 -0.9 -0.5 epimerase compare
PS417_07560 -0.9 -0.7 universal stress protein UspA compare
PS417_15885 -0.8 -0.8 GCN5 family acetyltransferase compare
PS417_12520 -0.8 -2.2 hypothetical protein compare
PS417_08675 -0.8 -2.6 molybdenum cofactor biosynthesis protein MoaA compare
PS417_07010 -0.8 -2.2 pseudouridine synthase compare
PS417_17565 -0.8 -1.5 branched-chain amino acid aminotransferase compare
PS417_10095 -0.8 -1.7 hypothetical protein compare
PS417_25765 -0.8 -1.3 transcriptional regulator compare
PS417_08200 -0.8 -1.4 hypothetical protein compare
PS417_13205 -0.8 -1.0 isochorismate-pyruvate lyase compare
PS417_27305 -0.8 -3.6 5-formyltetrahydrofolate cyclo-ligase compare
PS417_20080 -0.8 -2.2 peptidase P60 compare
PS417_02385 -0.8 -0.8 esterase compare
PS417_21140 -0.8 -2.4 LysR family transcriptional regulator compare
PS417_22680 -0.8 -2.7 chemotaxis protein CheY compare
PS417_22040 -0.8 -2.1 GNAT family acetyltransferase compare
PS417_18140 -0.8 -1.7 hypothetical protein compare
PS417_14805 -0.8 -1.0 AraC family transcriptional regulator compare
PS417_23250 -0.8 -3.2 S-adenosylmethionine tRNA ribosyltransferase compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source 2-Deoxy-D-Ribose in Pseudomonas simiae WCS417

For carbon source 2-Deoxy-D-Ribose across organisms