Experiment set8IT004 for Pseudomonas simiae WCS417

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Deoxyribonucleic acid from herring sperm 5 mg/mL carbon source

200 most important genes:

  gene name fitness t score description  
PS417_24155 -3.8 -5.8 ATP-binding protein compare
PS417_20985 -3.3 -4.3 porin compare
PS417_23800 -3.2 -15.3 ketol-acid reductoisomerase compare
PS417_04415 -2.9 -11.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_08125 -2.8 -1.6 prephenate dehydratase compare
PS417_18595 -2.8 -6.9 3-isopropylmalate dehydratase compare
PS417_19420 -2.8 -6.6 OHCU decarboxylase conserved
PS417_01565 -2.6 -5.4 imidazole glycerol phosphate synthase compare
PS417_23810 -2.6 -14.6 acetolactate synthase 3 catalytic subunit compare
PS417_23995 -2.6 -1.2 preprotein translocase subunit SecG compare
PS417_01855 -2.6 -3.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_24745 -2.6 -6.2 gamma-glutamyl phosphate reductase compare
PS417_13510 -2.5 -1.8 polyketide cyclase compare
PS417_19415 -2.5 -4.8 allantoinase compare
PS417_00185 -2.5 -4.4 tryptophan synthase subunit beta compare
PS417_08670 -2.5 -5.2 molybdopterin biosynthesis protein B compare
PS417_19425 -2.4 -1.3 allantoicase compare
PS417_18585 -2.4 -7.0 3-isopropylmalate dehydrogenase compare
PS417_27040 -2.3 -2.9 3-phosphoglycerate dehydrogenase compare
PS417_01575 -2.3 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23770 -2.3 -3.2 exodeoxyribonuclease V subunit alpha compare
PS417_04420 -2.2 -9.7 histidinol dehydrogenase compare
PS417_02510 -2.2 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_26890 -2.2 -7.0 dihydroxy-acid dehydratase compare
PS417_18560 -2.1 -11.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23805 -2.1 -4.2 acetolactate synthase 3 regulatory subunit compare
PS417_18600 -2.1 -2.1 isopropylmalate isomerase compare
PS417_01850 -2.1 -8.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_25715 -1.9 -5.7 anthranilate phosphoribosyltransferase compare
PS417_18530 -1.9 -6.5 O-succinylhomoserine sulfhydrylase compare
PS417_01560 -1.9 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_23110 -1.8 -7.2 2-isopropylmalate synthase compare
PS417_04875 -1.8 -1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_00180 -1.7 -3.1 tryptophan synthase subunit alpha compare
PS417_01605 -1.7 -1.5 phosphoglycerate mutase compare
PS417_27795 -1.7 -1.1 orotate phosphoribosyltransferase compare
PS417_16490 -1.7 -3.2 cell division protein FtsK compare
PS417_25270 -1.6 -3.6 NrdR family transcriptional regulator compare
PS417_20895 -1.6 -9.4 molybdenum cofactor sulfurylase compare
PS417_19430 -1.6 -3.7 ureidoglycolate hydrolase compare
PS417_02005 -1.6 -9.4 glutamate synthase compare
PS417_03205 -1.6 -6.4 adenine deaminase conserved
PS417_26740 -1.6 -5.5 homoserine acetyltransferase compare
PS417_25725 -1.5 -9.6 anthranilate synthase component I compare
PS417_24840 -1.5 -2.5 hypothetical protein compare
PS417_25940 -1.5 -8.1 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_21395 -1.5 -7.7 radical SAM protein compare
PS417_25710 -1.5 -1.3 indole-3-glycerol-phosphate synthase compare
PS417_20890 -1.5 -10.2 Xanthine dehydrogenase (EC 1.17.1.4) (from data) conserved
PS417_27300 -1.5 -1.4 cell division protein ZapA compare
PS417_26745 -1.5 -3.9 methionine biosynthesis protein MetW compare
PS417_14940 -1.5 -2.1 LysR family transcriptional regulator compare
PS417_23950 -1.4 -2.8 polynucleotide phosphorylase/polyadenylase compare
PS417_08810 -1.4 -8.8 glyoxylate carboligase (EC 4.1.1.47) (from data) conserved
PS417_25930 -1.4 -6.1 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_17485 -1.3 -6.5 membrane protein compare
PS417_22570 -1.3 -1.0 H-NS histone compare
PS417_21750 -1.3 -9.5 acetyl-CoA synthetase compare
PS417_22445 -1.3 -4.3 ATP-dependent DNA helicase RuvB compare
PS417_11930 -1.3 -6.8 hypothetical protein compare
PS417_04865 -1.3 -1.3 molybdenum cofactor biosynthesis protein MoaC compare
PS417_01580 -1.3 -1.6 imidazole glycerol phosphate synthase compare
PS417_20885 -1.3 -4.0 Xanthine dehydrogenase (EC 1.17.1.4) (from data) conserved
PS417_05165 -1.3 -3.9 cytosol aminopeptidase compare
PS417_02000 -1.3 -7.4 glutamate synthase compare
PS417_09725 -1.2 -6.2 transporter compare
PS417_19435 -1.2 -5.2 urate hydroxylase (1.7.3.3) (from data) conserved
PS417_15875 -1.2 -2.2 LuxR family transcriptional regulator compare
PS417_20855 -1.2 -1.8 hypothetical protein compare
PS417_27195 -1.2 -1.3 N-acetylglutamate synthase compare
PS417_04410 -1.2 -2.2 hypothetical protein compare
PS417_09210 -1.2 -1.7 TetR family transcriptional regulator compare
PS417_02415 -1.2 -4.4 phosphoserine phosphatase compare
PS417_23095 -1.2 -0.9 exodeoxyribonuclease compare
PS417_25720 -1.2 -4.9 anthranilate synthase component II compare
PS417_04050 -1.2 -2.5 peptide ABC transporter ATP-binding protein compare
PS417_17450 -1.2 -3.7 amino acid ABC transporter substrate-binding protein compare
PS417_01570 -1.1 -2.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_25920 -1.1 -5.0 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_06375 -1.1 -1.0 deoxycytidine triphosphate deaminase compare
PS417_05595 -1.1 -4.8 ornithine carbamoyltransferase compare
PS417_07845 -1.1 -2.2 transcriptional regulator compare
PS417_09695 -1.1 -2.1 hydrolase compare
PS417_01995 -1.1 -2.3 hypothetical protein compare
PS417_23545 -1.0 -2.4 gamma-glutamyl kinase compare
PS417_17480 -1.0 -3.0 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_17420 -1.0 -4.8 ethanol oxidation regulatory protein ercA (from data) compare
PS417_24370 -1.0 -0.9 (2Fe-2S)-binding protein compare
PS417_10810 -1.0 -1.7 hypothetical protein compare
PS417_09470 -1.0 -0.9 hypothetical protein compare
PS417_26850 -1.0 -1.1 twin-arginine translocation pathway signal protein compare
PS417_10040 -1.0 -1.2 MFS transporter compare
PS417_08580 -1.0 -5.3 histidine kinase compare
PS417_16195 -0.9 -1.1 AraC family transcriptional regulator compare
PS417_02485 -0.9 -3.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_06540 -0.9 -1.3 membrane protein compare
PS417_06675 -0.9 -2.2 ATP-dependent helicase compare
PS417_09330 -0.9 -2.7 NAD(P)H-quinone oxidoreductase compare
PS417_10210 -0.9 -3.0 hypothetical protein compare
PS417_17435 -0.9 -5.2 dehydrogenase compare
PS417_17490 -0.9 -1.3 ABC transporter ATP-binding protein compare
PS417_13580 -0.9 -2.3 AraC family transcriptional regulator compare
PS417_06395 -0.9 -1.2 amino acid transporter compare
PS417_17495 -0.9 -4.3 multidrug ABC transporter permease compare
PS417_04375 -0.9 -1.5 ABC transporter ATP-binding protein compare
PS417_15095 -0.9 -2.7 hypothetical protein compare
PS417_08730 -0.9 -1.8 cytochrome C compare
PS417_27865 -0.9 -2.8 LysR family transcriptional regulator compare
PS417_14125 -0.9 -2.2 molybdenum ABC transporter ATP-binding protein compare
PS417_24615 -0.9 -0.9 hypothetical protein compare
PS417_12730 -0.9 -1.8 glycosyltransferase compare
PS417_22050 -0.9 -3.3 ribonuclease BN compare
PS417_18140 -0.9 -3.1 hypothetical protein compare
PS417_02670 -0.9 -1.8 ABC transporter compare
PS417_13620 -0.9 -1.0 thermostable hemolysin compare
PS417_09865 -0.8 -1.5 hypothetical protein compare
PS417_25155 -0.8 -1.3 hypothetical protein compare
PS417_11015 -0.8 -1.8 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
PS417_15915 -0.8 -1.0 hypothetical protein compare
PS417_19630 -0.8 -2.6 LuxR family transcriptional regulator compare
PS417_14075 -0.8 -1.6 hypothetical protein compare
PS417_27595 -0.8 -2.0 recombinase XerC compare
PS417_04915 -0.8 -0.9 glutamine ABC transporter ATP-binding protein compare
PS417_12160 -0.8 -2.2 Fis family transcriptional regulator compare
PS417_27010 -0.8 -4.5 threonine dehydratase compare
PS417_14245 -0.8 -1.2 hypothetical protein compare
PS417_27875 -0.8 -4.4 histidine kinase compare
PS417_07560 -0.8 -1.3 universal stress protein UspA compare
PS417_00510 -0.8 -0.8 membrane protein compare
PS417_27475 -0.8 -1.5 membrane protein compare
PS417_08675 -0.8 -3.4 molybdenum cofactor biosynthesis protein MoaA compare
PS417_12390 -0.8 -1.6 hypothetical protein compare
PS417_27910 -0.8 -1.7 PppA compare
PS417_06280 -0.8 -2.6 ribonuclease HII compare
PS417_11530 -0.8 -3.2 amidase compare
PS417_10095 -0.8 -1.2 hypothetical protein compare
PS417_18370 -0.8 -1.3 hypothetical protein compare
PS417_17650 -0.8 -2.0 proteinase compare
PS417_19650 -0.8 -2.7 chemotaxis protein CheW compare
PS417_08220 -0.8 -0.5 epimerase compare
PS417_03550 -0.8 -2.4 hypothetical protein compare
PS417_21185 -0.8 -2.5 hypothetical protein compare
PS417_00830 -0.7 -3.0 hypothetical protein compare
PS417_08540 -0.7 -1.7 RNA helicase compare
PS417_15105 -0.7 -4.2 membrane protein compare
PS417_26175 -0.7 -0.7 sarcosine oxidase subunit gamma compare
PS417_23250 -0.7 -3.3 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_26260 -0.7 -1.2 hypothetical protein compare
PS417_05045 -0.7 -1.8 acetamidase compare
PS417_26995 -0.7 -3.7 phosphoserine phosphatase compare
PS417_10995 -0.7 -1.8 GntR family transcriptional regulator compare
PS417_24100 -0.7 -3.2 transcriptional regulator PdhR compare
PS417_05985 -0.7 -0.9 chemotaxis protein CheY compare
PS417_26730 -0.7 -0.4 pyrroline-5-carboxylate reductase compare
PS417_06200 -0.7 -3.0 protein-PII uridylyltransferase compare
PS417_11415 -0.7 -1.7 hypothetical protein compare
PS417_20835 -0.7 -2.7 LysR family transcriptional regulator compare
PS417_22520 -0.7 -1.5 histidine kinase compare
PS417_11810 -0.7 -1.4 oxidoreductase compare
PS417_04055 -0.7 -1.8 peptide transporter compare
PS417_04975 -0.7 -2.7 response regulator receiver protein compare
PS417_13870 -0.7 -1.8 hypothetical protein compare
PS417_18860 -0.7 -3.5 transcriptional regulator compare
PS417_05975 -0.7 -0.4 chemotaxis protein CheW compare
PS417_27535 -0.7 -3.4 chemotaxis protein CheY compare
PS417_16165 -0.7 -2.7 ABC transporter substrate-binding protein compare
PS417_21655 -0.7 -0.7 aspartate kinase compare
PS417_16240 -0.7 -1.8 ABC transporter ATP-binding protein compare
PS417_17980 -0.7 -1.2 ABC transporter permease compare
PS417_19755 -0.7 -1.3 flagellar motor switch protein FliM compare
PS417_09420 -0.7 -1.3 LysR family transcriptional regulator compare
PS417_16465 -0.7 -4.1 sirohydrochlorin ferrochelatase compare
PS417_00455 -0.7 -1.1 hypothetical protein compare
PS417_06175 -0.7 -2.3 cysteine sulfinate desulfinase compare
PS417_13805 -0.7 -4.0 4-amino-4-deoxy-L-arabinose transferase compare
PS417_16825 -0.7 -1.6 membrane protein compare
PS417_17505 -0.7 -1.4 LuxR family transcriptional regulator compare
PS417_03080 -0.7 -1.8 hypothetical protein compare
PS417_10220 -0.7 -2.1 hypothetical protein compare
PS417_03000 -0.7 -2.6 translation initiation factor Sui1 compare
PS417_05530 -0.7 -2.6 membrane protein compare
PS417_04080 -0.7 -1.0 peptide ABC transporter substrate-binding protein compare
PS417_17425 -0.7 -2.0 hypothetical protein compare
PS417_16520 -0.6 -1.4 cold-shock protein compare
PS417_21270 -0.6 -1.2 translation initiation factor 2 compare
PS417_26755 -0.6 -0.6 nucleoside-triphosphate diphosphatase compare
PS417_21120 -0.6 -2.1 phosphoserine phosphatase compare
PS417_03670 -0.6 -2.8 MerR family transcriptional regulator compare
PS417_02575 -0.6 -2.5 membrane protein compare
PS417_14710 -0.6 -1.2 isochorismatase compare
PS417_00355 -0.6 -1.8 metal ABC transporter permease compare
PS417_13660 -0.6 -1.8 AsnC family transcriptional regulator compare
PS417_05695 -0.6 -2.7 transcriptional regulator compare
PS417_19055 -0.6 -1.8 ArsR family transcriptional regulator compare
PS417_21255 -0.6 -1.5 hypothetical protein compare
PS417_01950 -0.6 -2.0 malate dehydrogenase compare
PS417_27835 -0.6 -2.8 endoribonuclease compare
PS417_01300 -0.6 -1.7 thioesterase compare
PS417_27705 -0.6 -0.9 amino acid dehydrogenase compare
PS417_02950 -0.6 -1.3 tRNA-dihydrouridine synthase B compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Deoxyribonucleic acid from herring sperm in Pseudomonas simiae WCS417

For carbon source Deoxyribonucleic acid from herring sperm across organisms