Experiment set8IT002 for Pseudomonas simiae WCS417

Compare to:

2-Deoxy-D-ribonic acid lithium salt 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PS417_07245 -6.5 -3.3 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_18585 -6.4 -4.5 3-isopropylmalate dehydrogenase compare
PS417_18530 -5.8 -8.8 O-succinylhomoserine sulfhydrylase compare
PS417_04415 -5.7 -10.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18600 -5.6 -3.9 isopropylmalate isomerase compare
PS417_00185 -5.5 -5.3 tryptophan synthase subunit beta compare
PS417_18560 -5.2 -6.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_22960 -5.2 -6.3 hypothetical protein compare
PS417_25725 -5.0 -17.0 anthranilate synthase component I compare
PS417_23810 -4.9 -14.0 acetolactate synthase 3 catalytic subunit compare
PS417_25720 -4.8 -6.6 anthranilate synthase component II compare
PS417_23800 -4.7 -13.5 ketol-acid reductoisomerase compare
PS417_23805 -4.7 -4.7 acetolactate synthase 3 regulatory subunit compare
PS417_06375 -4.6 -1.4 deoxycytidine triphosphate deaminase compare
PS417_08125 -4.6 -1.4 prephenate dehydratase compare
PS417_16465 -4.6 -10.8 sirohydrochlorin ferrochelatase compare
PS417_04420 -4.5 -11.3 histidinol dehydrogenase compare
PS417_26740 -4.5 -7.6 homoserine acetyltransferase compare
PS417_02005 -4.5 -13.6 glutamate synthase compare
PS417_07250 -4.4 -6.4 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) compare
PS417_26890 -4.1 -5.9 dihydroxy-acid dehydratase compare
PS417_27795 -4.1 -1.2 orotate phosphoribosyltransferase compare
PS417_02510 -4.0 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_24155 -4.0 -5.2 ATP-binding protein compare
PS417_01575 -4.0 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_00180 -3.9 -4.0 tryptophan synthase subunit alpha compare
PS417_13970 -3.9 -7.0 glycerate kinase compare
PS417_07260 -3.8 -11.4 2-deoxy-D-ribonate transporter 2 (from data) compare
PS417_01565 -3.8 -5.2 imidazole glycerol phosphate synthase compare
PS417_10515 -3.8 -6.1 acetyl-CoA acetyltransferase conserved
PS417_18595 -3.7 -2.5 3-isopropylmalate dehydratase compare
PS417_27040 -3.7 -2.7 3-phosphoglycerate dehydrogenase compare
PS417_22620 -3.6 -5.4 pyruvate kinase compare
PS417_24745 -3.6 -5.4 gamma-glutamyl phosphate reductase compare
PS417_12290 -3.6 -8.1 sulfite reductase compare
PS417_07240 -3.6 -5.2 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_27195 -3.5 -1.5 N-acetylglutamate synthase compare
PS417_01855 -3.5 -3.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_02000 -3.5 -12.0 glutamate synthase compare
PS417_01850 -3.5 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26745 -3.4 -3.6 methionine biosynthesis protein MetW compare
PS417_02415 -3.2 -4.2 phosphoserine phosphatase compare
PS417_25710 -3.2 -1.3 indole-3-glycerol-phosphate synthase compare
PS417_05595 -3.1 -6.6 ornithine carbamoyltransferase compare
PS417_23110 -3.1 -5.5 2-isopropylmalate synthase compare
PS417_20985 -3.1 -4.2 porin compare
PS417_21125 -3.0 -7.3 phosphoadenosine phosphosulfate reductase compare
PS417_12855 -3.0 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_25715 -2.9 -5.5 anthranilate phosphoribosyltransferase compare
PS417_27835 -2.8 -7.2 endoribonuclease compare
PS417_07265 -2.8 -13.4 2-deoxy-D-ribonate transporter 1 (from data) conserved
PS417_21705 -2.8 -6.9 arginine N-succinyltransferase compare
PS417_01570 -2.8 -1.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_01605 -2.7 -2.1 phosphoglycerate mutase compare
PS417_23545 -2.7 -2.1 gamma-glutamyl kinase compare
PS417_13975 -2.7 -4.0 CdaR family transcriptional regulator compare
PS417_08155 -2.7 -2.4 integration host factor subunit beta compare
PS417_10520 -2.7 -3.0 succinyl-CoA:3-ketoacid-CoA transferase compare
PS417_26730 -2.6 -1.1 pyrroline-5-carboxylate reductase compare
PS417_28220 -2.4 -3.2 LysR family transcriptional regulator compare
PS417_01580 -2.3 -1.0 imidazole glycerol phosphate synthase compare
PS417_26995 -2.3 -9.0 phosphoserine phosphatase compare
PS417_04180 -2.3 -3.9 GntR family transcriptional regulator compare
PS417_10040 -2.1 -1.6 MFS transporter compare
PS417_23950 -2.0 -1.6 polynucleotide phosphorylase/polyadenylase compare
PS417_23995 -1.9 -1.0 preprotein translocase subunit SecG compare
PS417_19755 -1.9 -2.3 flagellar motor switch protein FliM compare
PS417_23775 -1.9 -2.4 exodeoxyribonuclease V subunit beta compare
PS417_23770 -1.9 -2.0 exodeoxyribonuclease V subunit alpha compare
PS417_07255 -1.8 -4.0 Deoxyribonolactonase (from data) compare
PS417_20125 -1.8 -3.8 phosphoribosylglycinamide formyltransferase compare
PS417_18690 -1.8 -4.5 aromatic amino acid aminotransferase compare
PS417_20160 -1.8 -6.6 cysteine synthase compare
PS417_10530 -1.8 -5.1 LysR family transcriptional regulator compare
PS417_17240 -1.8 -3.7 trigger factor compare
PS417_05570 -1.7 -6.3 DeoR faimly transcriptional regulator compare
PS417_01915 -1.6 -1.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_01560 -1.6 -2.0 imidazoleglycerol-phosphate dehydratase compare
PS417_01710 -1.5 -6.9 histidine utilization repressor compare
PS417_07170 -1.5 -3.5 hypothetical protein compare
PS417_26695 -1.5 -1.5 uracil phosphoribosyltransferase compare
PS417_05985 -1.5 -1.9 chemotaxis protein CheY compare
PS417_27300 -1.5 -1.3 cell division protein ZapA compare
PS417_22520 -1.4 -2.3 histidine kinase compare
PS417_26990 -1.4 -1.5 RNA pyrophosphohydrolase compare
PS417_05160 -1.4 -1.3 DNA polymerase III subunit chi compare
PS417_19650 -1.4 -3.2 chemotaxis protein CheW compare
PS417_19800 -1.4 -1.7 flagellar motor switch protein FliG compare
PS417_27435 -1.4 -4.2 polyphosphate kinase compare
PS417_03525 -1.4 -1.7 hypothetical protein compare
PS417_05975 -1.4 -0.6 chemotaxis protein CheW compare
PS417_08230 -1.3 -1.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_19605 -1.3 -1.1 hypothetical protein compare
PS417_17000 -1.3 -2.8 MerR family transcriptional regulator compare
PS417_01290 -1.3 -1.7 ADP-ribose diphosphatase compare
PS417_21700 -1.3 -3.8 arginine N-succinyltransferase compare
PS417_16490 -1.3 -2.4 cell division protein FtsK compare
PS417_10095 -1.3 -1.8 hypothetical protein compare
PS417_26040 -1.3 -3.6 malate synthase compare
PS417_09740 -1.3 -2.6 RNA polymerase subunit sigma-24 compare
PS417_23855 -1.2 -1.6 ABC transporter substrate-binding protein compare
PS417_12595 -1.2 -2.2 transcriptional regulator compare
PS417_06200 -1.2 -3.8 protein-PII uridylyltransferase compare
PS417_11925 -1.2 -1.5 hypothetical protein compare
PS417_06675 -1.2 -2.2 ATP-dependent helicase compare
PS417_15915 -1.1 -1.1 hypothetical protein compare
PS417_19805 -1.1 -1.7 flagellar M-ring protein FliF compare
PS417_28070 -1.1 -6.2 phosphate ABC transporter ATP-binding protein compare
PS417_24465 -1.1 -6.1 metallopeptidase compare
PS417_24675 -1.1 -1.7 lipoyl synthase compare
PS417_11770 -1.1 -1.9 pyruvate dehydrogenase compare
PS417_19645 -1.1 -2.2 chemotaxis protein compare
PS417_04585 -1.1 -1.4 hypothetical protein compare
PS417_18860 -1.1 -3.4 transcriptional regulator compare
PS417_11615 -1.1 -1.3 urea ABC transporter ATP-binding protein compare
PS417_23900 -1.1 -5.9 poly(A) polymerase compare
PS417_06370 -1.1 -1.7 cold-shock protein compare
PS417_04365 -1.1 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21390 -1.1 -4.7 hypothetical protein compare
PS417_28080 -1.1 -6.8 phosphate ABC transporter permease compare
PS417_22990 -1.1 -1.3 iron dicitrate transport regulator FecR compare
PS417_27010 -1.1 -5.5 threonine dehydratase compare
PS417_05635 -1.1 -3.9 membrane protein compare
PS417_27595 -1.1 -2.3 recombinase XerC compare
PS417_22450 -1.1 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_21430 -1.1 -1.9 3-oxoacyl-ACP synthase compare
PS417_08435 -1.0 -1.7 pilus assembly protein PilZ compare
PS417_22050 -1.0 -4.3 ribonuclease BN compare
PS417_13800 -1.0 -2.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_04500 -1.0 -1.1 hypothetical protein compare
PS417_01400 -1.0 -1.5 hypothetical protein compare
PS417_23170 -1.0 -1.2 FeS assembly protein IscX compare
PS417_06600 -1.0 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_05455 -1.0 -4.4 XRE family transcriptional regulator compare
PS417_08580 -1.0 -3.7 histidine kinase compare
PS417_17405 -1.0 -1.4 AraC family transcriptional regulator compare
PS417_18590 -1.0 -1.9 SAM-dependent methyltransferase compare
PS417_27690 -1.0 -3.6 XRE family transcriptional regulator compare
PS417_16845 -1.0 -1.3 monovalent cation/H+ antiporter subunit E compare
PS417_16195 -1.0 -0.9 AraC family transcriptional regulator compare
PS417_07640 -1.0 -2.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_11760 -1.0 -2.2 Fis family transcriptional regulator compare
PS417_10245 -1.0 -1.0 hypothetical protein compare
PS417_22570 -1.0 -0.7 H-NS histone compare
PS417_02555 -1.0 -6.4 exoribonuclease R compare
PS417_19625 -1.0 -1.7 histidine kinase compare
PS417_08650 -1.0 -2.3 transcriptional regulator compare
PS417_16400 -1.0 -1.0 NAD(P)H-quinone oxidoreductase compare
PS417_12540 -1.0 -1.5 hypothetical protein compare
PS417_05710 -0.9 -2.3 hypothetical protein compare
PS417_23160 -0.9 -1.4 50S rRNA methyltransferase compare
PS417_18425 -0.9 -1.3 sporulation protein compare
PS417_15100 -0.9 -2.0 BatB protein compare
PS417_15470 -0.9 -2.7 saccharopine dehydrogenase compare
PS417_15465 -0.9 -2.0 carboxynorspermidine decarboxylase compare
PS417_08195 -0.9 -5.1 hypothetical protein compare
PS417_19860 -0.9 -6.2 flagellar hook protein FlgL compare
PS417_04650 -0.9 -1.3 D-alanine--D-alanine ligase compare
PS417_18730 -0.9 -2.1 ABC transporter permease compare
PS417_23390 -0.9 -3.7 ubiquinol oxidase subunit II compare
PS417_08245 -0.9 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_16990 -0.9 -3.4 acyl-CoA dehydrogenase compare
PS417_12160 -0.9 -2.8 Fis family transcriptional regulator compare
PS417_28170 -0.9 -2.6 transcriptional regulator compare
PS417_21035 -0.9 -4.8 multidrug transporter compare
PS417_06895 -0.9 -1.8 DNA-binding protein compare
PS417_09325 -0.9 -4.0 peptidase S41 compare
PS417_11015 -0.9 -2.1 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
PS417_06680 -0.9 -4.4 nuclease PIN compare
PS417_09580 -0.9 -2.4 tyrosyl-trna synthetase compare
PS417_08225 -0.9 -2.7 acetolactate synthase compare
PS417_19065 -0.9 -0.6 monooxygenase compare
PS417_27705 -0.9 -1.1 amino acid dehydrogenase compare
PS417_01415 -0.9 -3.8 glycosyl transferase family 1 compare
PS417_15085 -0.9 -2.4 ATPase AAA compare
PS417_12390 -0.8 -1.8 hypothetical protein compare
PS417_23915 -0.8 -2.1 pantoate--beta-alanine ligase compare
PS417_16520 -0.8 -1.6 cold-shock protein compare
PS417_24525 -0.8 -1.7 nuclease compare
PS417_13790 -0.8 -3.4 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_22115 -0.8 -1.5 transcriptional regulator compare
PS417_12190 -0.8 -1.4 microcin ABC transporter ATP-binding protein compare
PS417_21000 -0.8 -1.2 CrfX protein compare
PS417_20665 -0.8 -4.3 hypothetical protein compare
PS417_18260 -0.8 -2.0 TetR family transcriptional regulator compare
PS417_00900 -0.8 -2.0 4-aminobutyrate aminotransferase compare
PS417_21165 -0.8 -2.6 LysR family transcriptional regulator compare
PS417_13510 -0.8 -0.8 polyketide cyclase compare
PS417_21630 -0.8 -1.8 magnesium transporter compare
PS417_02820 -0.8 -2.0 urea ABC transporter ATP-binding protein compare
PS417_14295 -0.8 -1.6 AraC family transcriptional regulator compare
PS417_00945 -0.8 -3.2 sulfate ABC transporter ATP-binding protein compare
PS417_02560 -0.8 -1.3 23S rRNA methyltransferase compare
PS417_27305 -0.8 -2.9 5-formyltetrahydrofolate cyclo-ligase compare
PS417_08410 -0.8 -1.2 hypothetical protein compare
PS417_27475 -0.8 -1.2 membrane protein compare
PS417_24345 -0.8 -3.1 ubiquinol oxidase subunit II compare
PS417_21565 -0.8 -2.0 flagellar basal body rod protein FlgC compare
PS417_00045 -0.8 -1.6 glycerol acyltransferase compare
PS417_15885 -0.8 -1.1 GCN5 family acetyltransferase compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source 2-Deoxy-D-ribonic acid lithium salt in Pseudomonas simiae WCS417

For carbon source 2-Deoxy-D-ribonic acid lithium salt across organisms