Experiment set8IT001 for Pseudomonas simiae WCS417

Compare to:

2'-Deoxyinosine 5 mM carbon source

200 most important genes:

  gene name fitness t score description  
PS417_19415 -5.1 -3.0 allantoinase compare
PS417_12120 -3.5 -4.2 IclR family transcriptional regulator compare
PS417_22375 -3.4 -1.3 cold-shock protein compare
PS417_08230 -3.2 -2.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_27040 -3.1 -2.7 3-phosphoglycerate dehydrogenase compare
PS417_08125 -3.1 -1.2 prephenate dehydratase compare
PS417_21395 -2.9 -9.4 radical SAM protein compare
PS417_27535 -2.7 -6.4 chemotaxis protein CheY compare
PS417_19065 -2.7 -1.0 monooxygenase compare
PS417_04420 -2.7 -7.8 histidinol dehydrogenase compare
PS417_24655 -2.6 -4.4 hypothetical protein compare
PS417_24155 -2.6 -2.5 ATP-binding protein compare
PS417_19395 -2.6 -7.9 guanine permease compare
PS417_18530 -2.6 -3.9 O-succinylhomoserine sulfhydrylase compare
PS417_23800 -2.6 -8.6 ketol-acid reductoisomerase compare
PS417_28220 -2.5 -2.2 LysR family transcriptional regulator compare
PS417_23110 -2.5 -9.2 2-isopropylmalate synthase compare
PS417_26740 -2.5 -7.5 homoserine acetyltransferase compare
PS417_04180 -2.5 -4.1 GntR family transcriptional regulator compare
PS417_02510 -2.5 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_22990 -2.5 -1.6 iron dicitrate transport regulator FecR compare
PS417_21125 -2.4 -5.8 phosphoadenosine phosphosulfate reductase compare
PS417_19420 -2.4 -3.6 OHCU decarboxylase compare
PS417_08670 -2.4 -3.3 molybdopterin biosynthesis protein B compare
PS417_04595 -2.4 -2.6 cell division protein MraZ compare
PS417_01575 -2.4 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23995 -2.3 -0.9 preprotein translocase subunit SecG compare
PS417_20895 -2.3 -9.2 molybdenum cofactor sulfurylase compare
PS417_11845 -2.3 -3.2 RpiR family transcriptional regulator compare
PS417_20885 -2.3 -5.5 Xanthine dehydrogenase (EC 1.17.1.4) (from data) compare
PS417_12525 -2.3 -3.9 hypothetical protein compare
PS417_19430 -2.3 -2.8 ureidoglycolate hydrolase compare
PS417_04415 -2.3 -7.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18585 -2.2 -3.8 3-isopropylmalate dehydrogenase compare
PS417_08810 -2.1 -8.0 glyoxylate carboligase (EC 4.1.1.47) (from data) compare
PS417_27135 -2.1 -0.8 glutamine synthetase compare
PS417_22520 -2.1 -1.4 histidine kinase compare
PS417_19095 -2.1 -1.9 hypothetical protein compare
PS417_27195 -2.1 -1.0 N-acetylglutamate synthase compare
PS417_00180 -2.1 -2.0 tryptophan synthase subunit alpha compare
PS417_13510 -2.0 -1.1 polyketide cyclase compare
PS417_04865 -2.0 -2.3 molybdenum cofactor biosynthesis protein MoaC compare
PS417_20890 -2.0 -7.0 Xanthine dehydrogenase (EC 1.17.1.4) (from data) compare
PS417_24745 -2.0 -3.7 gamma-glutamyl phosphate reductase compare
PS417_08805 -1.9 -5.8 hydroxypyruvate isomerase compare
PS417_18600 -1.9 -2.4 isopropylmalate isomerase compare
PS417_09245 -1.9 -1.6 recombinase RdgC compare
PS417_14125 -1.9 -2.2 molybdenum ABC transporter ATP-binding protein compare
PS417_02005 -1.9 -6.9 glutamate synthase compare
PS417_18425 -1.9 -1.6 sporulation protein compare
PS417_17705 -1.9 -2.6 LacI family transcriptional regulator compare
PS417_26745 -1.8 -4.1 methionine biosynthesis protein MetW compare
PS417_09085 -1.8 -1.3 hypothetical protein compare
PS417_08220 -1.8 -0.7 epimerase compare
PS417_25715 -1.8 -3.8 anthranilate phosphoribosyltransferase compare
PS417_16490 -1.8 -2.1 cell division protein FtsK compare
PS417_26890 -1.8 -5.6 dihydroxy-acid dehydratase compare
PS417_16515 -1.8 -2.5 Clp protease ClpS compare
PS417_06375 -1.8 -0.9 deoxycytidine triphosphate deaminase compare
PS417_21480 -1.8 -1.6 23S rRNA pseudouridylate synthase compare
PS417_24370 -1.8 -0.9 (2Fe-2S)-binding protein compare
PS417_03685 -1.8 -3.1 FAD-dependent oxidoreductase compare
PS417_24100 -1.8 -5.1 transcriptional regulator PdhR compare
PS417_11810 -1.7 -1.4 oxidoreductase compare
PS417_18560 -1.7 -5.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26985 -1.7 -4.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_20985 -1.7 -2.8 porin compare
PS417_12280 -1.7 -1.7 MerR family transcriptional regulator compare
PS417_14105 -1.7 -2.7 6-O-methylguanine DNA methyltransferase compare
PS417_19435 -1.7 -4.5 urate hydroxylase (1.7.3.3) (from data) compare
PS417_10095 -1.6 -1.5 hypothetical protein compare
PS417_06245 -1.6 -1.9 zinc metallopeptidase RseP compare
PS417_23810 -1.6 -6.6 acetolactate synthase 3 catalytic subunit compare
PS417_07640 -1.6 -1.4 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_16715 -1.6 -1.0 DoxX family protein compare
PS417_01565 -1.6 -2.4 imidazole glycerol phosphate synthase compare
PS417_16990 -1.6 -3.0 acyl-CoA dehydrogenase compare
PS417_07240 -1.6 -3.1 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_25765 -1.6 -1.6 transcriptional regulator compare
PS417_17945 -1.6 -0.8 hypothetical protein compare
PS417_07250 -1.6 -2.8 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) compare
PS417_10520 -1.6 -2.3 succinyl-CoA:3-ketoacid-CoA transferase compare
PS417_28225 -1.6 -1.2 hypothetical protein compare
PS417_23805 -1.6 -2.0 acetolactate synthase 3 regulatory subunit compare
PS417_07245 -1.6 -2.1 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_17565 -1.6 -2.7 branched-chain amino acid aminotransferase compare
PS417_27875 -1.5 -5.3 histidine kinase compare
PS417_27215 -1.5 -2.9 hypothetical protein compare
PS417_20115 -1.5 -2.9 hypothetical protein compare
PS417_21425 -1.5 -1.5 4-amino-4-deoxychorismate lyase compare
PS417_02000 -1.4 -6.3 glutamate synthase compare
PS417_07260 -1.4 -4.2 2-deoxy-D-ribonate transporter 2 (from data) compare
PS417_00185 -1.4 -2.1 tryptophan synthase subunit beta compare
PS417_08045 -1.4 -1.6 uracil permease compare
PS417_25725 -1.4 -7.0 anthranilate synthase component I compare
PS417_24085 -1.4 -1.6 protein RnfH compare
PS417_23545 -1.4 -1.8 gamma-glutamyl kinase compare
PS417_03970 -1.4 -1.2 1-phosphofructokinase compare
PS417_14565 -1.4 -2.6 chemotaxis protein compare
PS417_01710 -1.4 -3.3 histidine utilization repressor compare
PS417_12695 -1.4 -2.1 mannitol dehydrogenase compare
PS417_01950 -1.3 -4.0 malate dehydrogenase compare
PS417_27475 -1.3 -1.7 membrane protein compare
PS417_22445 -1.3 -3.1 ATP-dependent DNA helicase RuvB compare
PS417_19425 -1.3 -0.7 allantoicase compare
PS417_22385 -1.3 -7.4 quinolinate synthase A compare
PS417_15885 -1.3 -1.1 GCN5 family acetyltransferase compare
PS417_01855 -1.3 -1.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_18445 -1.3 -1.8 glycerol-3-phosphatase compare
PS417_10995 -1.3 -2.1 GntR family transcriptional regulator compare
PS417_26260 -1.3 -1.2 hypothetical protein compare
PS417_19630 -1.3 -2.2 LuxR family transcriptional regulator compare
PS417_14115 -1.3 -3.5 molybdate ABC transporter substrate-binding protein compare
PS417_04385 -1.3 -3.1 organic solvent ABC transporter substrate-binding protein compare
PS417_10245 -1.3 -1.1 hypothetical protein compare
PS417_26335 -1.3 -1.9 BetI family transcriptional regulator compare
PS417_01735 -1.3 -2.1 ABC transporter permease compare
PS417_01915 -1.3 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_18595 -1.3 -1.5 3-isopropylmalate dehydratase compare
PS417_01145 -1.2 -0.6 taurine transporter ATP-binding subunit compare
PS417_16005 -1.2 -2.3 ATPase compare
PS417_05120 -1.2 -1.7 RNA polymerase subunit sigma-24 compare
PS417_01570 -1.2 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_06145 -1.2 -0.8 hypothetical protein compare
PS417_25720 -1.2 -4.0 anthranilate synthase component II compare
PS417_19400 -1.2 -3.3 amino acid transporter LysE compare
PS417_27815 -1.2 -0.7 hypothetical protein compare
PS417_14710 -1.2 -1.2 isochorismatase compare
PS417_10275 -1.2 -1.6 histidine kinase compare
PS417_17530 -1.2 -3.9 ArsR family transcriptional regulator compare
PS417_14140 -1.2 -1.1 membrane protein compare
PS417_02375 -1.2 -4.8 hypothetical protein compare
PS417_22115 -1.2 -2.2 transcriptional regulator compare
PS417_07620 -1.1 -1.2 beta-hexosaminidase compare
PS417_07140 -1.1 -3.0 peptidase M48 compare
PS417_22450 -1.1 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_01875 -1.1 -1.3 polyhydroxyalkanoic acid system protein compare
PS417_23105 -1.1 -0.8 hypothetical protein compare
PS417_22500 -1.1 -6.0 porin compare
PS417_17505 -1.1 -1.8 LuxR family transcriptional regulator compare
PS417_00550 -1.1 -0.7 hypothetical protein compare
PS417_27305 -1.1 -4.1 5-formyltetrahydrofolate cyclo-ligase compare
PS417_12005 -1.1 -2.4 hypothetical protein compare
PS417_04340 -1.1 -3.1 ribosome hibernation promoting factor HPF compare
PS417_19520 -1.1 -1.7 transcriptional regulator compare
PS417_27705 -1.1 -1.0 amino acid dehydrogenase compare
PS417_06895 -1.1 -2.2 DNA-binding protein compare
PS417_18860 -1.1 -2.6 transcriptional regulator compare
PS417_07010 -1.1 -1.5 pseudouridine synthase compare
PS417_16720 -1.1 -0.8 membrane protein compare
PS417_21750 -1.1 -6.8 acetyl-CoA synthetase compare
PS417_04380 -1.1 -1.1 ABC transporter permease compare
PS417_21705 -1.1 -2.4 arginine N-succinyltransferase compare
PS417_12855 -1.1 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_10040 -1.1 -0.8 MFS transporter compare
PS417_09460 -1.0 -1.8 alkanesulfonate monooxygenase compare
PS417_02070 -1.0 -0.7 membrane protein compare
PS417_23170 -1.0 -1.2 FeS assembly protein IscX compare
PS417_20055 -1.0 -2.2 cob(II)yrinic acid a,c-diamide reductase compare
PS417_09140 -1.0 -1.6 biopolymer transporter ExbB compare
PS417_12290 -1.0 -3.6 sulfite reductase compare
PS417_04390 -1.0 -3.2 toluene tolerance protein compare
PS417_15365 -1.0 -1.5 diaminopimelate epimerase compare
PS417_02415 -1.0 -3.4 phosphoserine phosphatase compare
PS417_05160 -1.0 -0.7 DNA polymerase III subunit chi compare
PS417_15095 -1.0 -2.3 hypothetical protein compare
PS417_25280 -1.0 -1.7 methyltransferase compare
PS417_03515 -1.0 -1.1 type III secretion protein compare
PS417_06165 -1.0 -2.3 thiamine biosynthesis protein ThiF compare
PS417_21235 -1.0 -3.4 transglutaminase compare
PS417_03145 -1.0 -1.4 acetyl-CoA acetyltransferase compare
PS417_16465 -1.0 -2.9 sirohydrochlorin ferrochelatase compare
PS417_19935 -1.0 -2.3 hypothetical protein compare
PS417_18010 -1.0 -2.2 acid phosphatase compare
PS417_15770 -1.0 -0.9 pyridoxine 5'-phosphate oxidase compare
PS417_04590 -1.0 -3.5 methyltransferase compare
PS417_26660 -1.0 -2.4 protein PilI compare
PS417_05570 -1.0 -2.6 DeoR faimly transcriptional regulator compare
PS417_04875 -1.0 -0.7 molybdenum cofactor biosynthesis protein MoaE compare
PS417_02225 -1.0 -1.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_07085 -1.0 -2.3 transcriptional regulator compare
PS417_03670 -1.0 -3.1 MerR family transcriptional regulator compare
PS417_00345 -1.0 -1.4 copper-binding protein compare
PS417_23825 -0.9 -3.8 penicillin-binding protein compare
PS417_15940 -0.9 -2.5 mechanosensitive ion channel protein MscS compare
PS417_17675 -0.9 -1.1 ABC transporter compare
PS417_09725 -0.9 -3.9 transporter compare
PS417_15235 -0.9 -2.2 short-chain dehydrogenase compare
PS417_08580 -0.9 -2.7 histidine kinase compare
PS417_11555 -0.9 -3.1 (2Fe-2S)-binding protein compare
PS417_00810 -0.9 -1.7 RNA polymerase sigma factor compare
PS417_07255 -0.9 -2.2 Deoxyribonolactonase (from data) compare
PS417_01965 -0.9 -1.1 fimbriae biosynthesis protein compare
PS417_11225 -0.9 -1.9 glyoxalase compare
PS417_13090 -0.9 -1.6 dienelactone hydrolase compare
PS417_05825 -0.9 -2.3 cytochrome D ubiquinol oxidase subunit II compare
PS417_21655 -0.9 -0.4 aspartate kinase compare
PS417_18070 -0.9 -0.6 general secretion pathway protein GspH compare
PS417_26390 -0.9 -1.2 acyltransferase compare
PS417_15840 -0.9 -2.9 histidine kinase compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source 2'-Deoxyinosine in Pseudomonas simiae WCS417

For carbon source 2'-Deoxyinosine across organisms