Experiment set87S266 for Escherichia coli BW25113

biofilm medium PVC; 7 hours

Group: biofilm medium pvc
Media:
Culturing: Keio_ML9a
By: Allison on 1/6/2026

Specific Phenotypes

For 6 genes in this experiment

SEED Subsystems

Subsystem	#Specific
KDO2-Lipid A biosynthesis	1
LOS core oligosaccharide biosynthesis	1
Thioredoxin-disulfide reductase	1
linker unit-arabinogalactan synthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Fatty acid biosynthesis
• Lysine degradation
• Histidine metabolism
• Tyrosine metabolism
• Phenylalanine metabolism
• Selenoamino acid metabolism
• Lipopolysaccharide biosynthesis
• Glycerophospholipid metabolism
• Ether lipid metabolism
• Glycosphingolipid biosynthesis - ganglio series
• 1- and 2-Methylnaphthalene degradation
• Benzoate degradation via CoA ligation
• Ethylbenzene degradation
• Butanoate metabolism
• Limonene and pinene degradation
• Diterpenoid biosynthesis
• Carotenoid biosynthesis - General
• Anthocyanin biosynthesis
• Alkaloid biosynthesis I
• Alkaloid biosynthesis II
• Biosynthesis of unsaturated fatty acids
• Biosynthesis of type II polyketide backbone
• Biosynthesis of terpenoids and steroids

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
UDP-α-D-galactofuranose biosynthesis	2	2	1
superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis	6	5	1
O-antigen building blocks biosynthesis (E. coli)	11	11	1
mycolyl-arabinogalactan-peptidoglycan complex biosynthesis	18	2	1
superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis	33	14	1