Experiment set83S1077 for Escherichia coli BW25113
mixed community control
Group: mixed community controlMedia: LB
Culturing: Keio_ML9a, agar plate, Aerobic, at 30 (C), (Solid)
By: Jude on 12/1/25
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 4 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose phosphate pathway
- Glycine, serine and threonine metabolism
- Valine, leucine and isoleucine biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-methionine degradation II | 3 | 2 | 2 |
| L-threonine degradation I | 6 | 6 | 3 |
| ribose phosphorylation | 2 | 2 | 1 |
| L-threonine degradation V | 2 | 1 | 1 |
| L-isoleucine biosynthesis I (from threonine) | 7 | 7 | 3 |
| glycine degradation | 3 | 3 | 1 |
| 2-deoxy-D-ribose degradation I | 3 | 3 | 1 |
| superpathway of L-isoleucine biosynthesis I | 13 | 13 | 3 |
| hypoglycin biosynthesis | 14 | 4 | 3 |
| superpathway of branched chain amino acid biosynthesis | 17 | 17 | 3 |
| superpathway of L-threonine metabolism | 18 | 16 | 3 |
| cyclosporin A biosynthesis | 15 | 2 | 1 |