Experiment set7S943 for Variovorax sp. OAS795

Compare to:

NLDM_defined with Sodium Chloride 250 mM

200 most important genes:

  gene name fitness t score description  
ABID97_RS17270 -6.6 -4.6 ATP-binding protein compare
ABID97_RS17265 -6.4 -3.9 two-component system response regulator OmpR compare
ABID97_RS10305 -5.6 -2.9 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS23665 -5.3 -2.7 DNA-directed RNA polymerase subunit omega compare
ABID97_RS17600 -4.7 -3.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS24920 -4.7 -2.5 Holliday junction branch migration protein RuvA compare
ABID97_RS20095 -3.8 -2.6 DNA topoisomerase IV subunit B compare
ABID97_RS07500 -3.8 -3.6 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS27795 -3.7 -1.1 TetR/AcrR family transcriptional regulator compare
ABID97_RS23015 -3.6 -7.0 glycosyltransferase family 4 protein compare
ABID97_RS04765 -3.6 -2.5 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS23450 -3.6 -2.5 MBOAT family protein compare
ABID97_RS03805 -3.5 -1.5 ATP-binding protein compare
ABID97_RS13600 -3.5 -1.5 hypothetical protein compare
ABID97_RS23040 -3.5 -8.5 polysaccharide biosynthesis/export family protein compare
ABID97_RS06575 -3.4 -6.5 trehalose-phosphatase compare
ABID97_RS05370 -3.4 -8.4 ATP-binding protein compare
ABID97_RS23025 -3.3 -9.5 sugar transferase compare
ABID97_RS05095 -3.3 -1.4 DUF4150 domain-containing protein compare
ABID97_RS05365 -3.3 -6.1 DUF4390 domain-containing protein compare
ABID97_RS22625 -3.3 -7.9 HAMP domain-containing sensor histidine kinase compare
ABID97_RS10725 -3.3 -8.5 peptidoglycan DD-metalloendopeptidase family protein compare
ABID97_RS27830 -3.2 -1.9 AMP-binding protein compare
ABID97_RS23030 -3.2 -9.4 polysaccharide biosynthesis tyrosine autokinase compare
ABID97_RS05670 -3.2 -2.2 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS29015 -3.1 -1.3 transcriptional regulator GcvA compare
ABID97_RS05740 -3.1 -4.2 glycosyltransferase family A protein compare
ABID97_RS14615 -3.1 -2.3 phosphate signaling complex protein PhoU compare
ABID97_RS22620 -3.0 -5.5 response regulator transcription factor compare
ABID97_RS20295 -2.8 -4.3 N-acetylmuramoyl-L-alanine amidase compare
ABID97_RS05750 -2.8 -1.9 glycosyltransferase compare
ABID97_RS05755 -2.8 -1.9 glycosyltransferase compare
ABID97_RS06565 -2.6 -12.8 alpha,alpha-trehalose-phosphate synthase (UDP-forming) compare
ABID97_RS01975 -2.6 -10.0 MltA domain-containing protein compare
ABID97_RS16785 -2.5 -2.4 transporter compare
ABID97_RS14090 -2.5 -1.1 response regulator transcription factor compare
ABID97_RS23455 -2.4 -3.7 hypothetical protein compare
ABID97_RS03800 -2.4 -2.8 O-antigen ligase family protein compare
ABID97_RS27900 -2.4 -1.5 DUF4242 domain-containing protein compare
ABID97_RS23000 -2.3 -14.9 YjbH domain-containing protein compare
ABID97_RS05765 -2.3 -3.7 UDP-glucose 4-epimerase GalE compare
ABID97_RS16210 -2.3 -1.9 cytochrome-c oxidase, cbb3-type subunit III compare
ABID97_RS12995 -2.2 -1.9 hypothetical protein compare
ABID97_RS06255 -2.2 -2.8 cell division protein FtsA compare
ABID97_RS13860 -2.2 -6.6 hypothetical protein compare
ABID97_RS04500 -2.1 -2.3 HPr(Ser) kinase/phosphatase compare
ABID97_RS22940 -2.0 -3.6 single-stranded-DNA-specific exonuclease RecJ compare
ABID97_RS16530 -2.0 -1.4 DNA ligase compare
ABID97_RS22995 -2.0 -11.9 YjbF family lipoprotein compare
ABID97_RS18445 -2.0 -1.3 helix-turn-helix transcriptional regulator compare
ABID97_RS13750 -2.0 -1.0 hypothetical protein compare
ABID97_RS06460 -1.9 -1.3 sigma 54-interacting transcriptional regulator compare
ABID97_RS13980 -1.9 -1.0 RnfABCDGE type electron transport complex subunit B compare
ABID97_RS05280 -1.9 -1.9 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS18380 -1.8 -1.6 hypothetical protein compare
ABID97_RS22990 -1.8 -2.9 hypothetical protein compare
ABID97_RS08810 -1.7 -1.3 alpha/beta hydrolase compare
ABID97_RS27365 -1.7 -0.7 nitrogen assimilation transcriptional regulator NAC compare
ABID97_RS08480 -1.7 -2.0 citrate synthase compare
ABID97_RS09750 -1.7 -1.0 hypothetical protein compare
ABID97_RS21440 -1.7 -7.1 cyclic peptide export ABC transporter compare
ABID97_RS22330 -1.6 -1.8 2-hydroxy-3-oxopropionate reductase compare
ABID97_RS29215 -1.6 -1.0 LysR family transcriptional regulator compare
ABID97_RS18990 -1.6 -1.7 SDR family oxidoreductase compare
ABID97_RS23045 -1.6 -4.8 phosphatase PAP2 family protein compare
ABID97_RS25625 -1.6 -1.8 tetratricopeptide repeat protein compare
ABID97_RS14505 -1.5 -8.5 hypothetical protein compare
ABID97_RS24745 -1.5 -1.0 glutathione S-transferase compare
ABID97_RS14915 -1.5 -5.2 serine hydrolase compare
ABID97_RS19955 -1.5 -1.3 glycerol-3-phosphate dehydrogenase compare
ABID97_RS15980 -1.5 -3.9 endolytic transglycosylase MltG compare
ABID97_RS22875 -1.5 -1.3 ABC transporter ATP-binding protein compare
ABID97_RS25595 -1.5 -1.2 FAD:protein FMN transferase compare
ABID97_RS26450 -1.5 -1.2 hypothetical protein compare
ABID97_RS15590 -1.5 -1.4 disulfide bond formation protein B compare
ABID97_RS29350 -1.4 -1.8 nuclear transport factor 2 family protein compare
ABID97_RS18635 -1.4 -1.3 enoyl-CoA hydratase-related protein compare
ABID97_RS07610 -1.4 -0.8 response regulator transcription factor compare
ABID97_RS13245 -1.4 -0.7 XRE family transcriptional regulator compare
ABID97_RS04505 -1.4 -1.8 ferric iron uptake transcriptional regulator compare
ABID97_RS17850 -1.4 -0.8 tetratricopeptide repeat protein compare
ABID97_RS23550 -1.4 -1.8 urease accessory UreF family protein compare
ABID97_RS03680 -1.4 -4.3 lysophospholipid transporter LplT compare
ABID97_RS18205 -1.4 -2.7 XRE family transcriptional regulator compare
ABID97_RS21645 -1.4 -1.8 SPOR domain-containing protein compare
ABID97_RS17970 -1.3 -4.7 protein TolQ compare
ABID97_RS12590 -1.3 -0.8 triphosphoribosyl-dephospho-CoA synthase compare
ABID97_RS01650 -1.3 -1.6 orotidine-5'-phosphate decarboxylase compare
ABID97_RS05215 -1.3 -1.2 hypothetical protein compare
ABID97_RS08680 -1.3 -1.6 helix-turn-helix domain-containing protein compare
ABID97_RS29385 -1.3 -1.4 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS02605 -1.3 -6.6 TMEM165/GDT1 family protein compare
ABID97_RS14990 -1.2 -0.9 hypothetical protein compare
ABID97_RS14495 -1.2 -6.6 hypothetical protein compare
ABID97_RS03485 -1.2 -7.4 GtrA family protein compare
ABID97_RS10920 -1.2 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
ABID97_RS19695 -1.2 -0.8 alpha/beta fold hydrolase compare
ABID97_RS06195 -1.2 -0.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABID97_RS23460 -1.2 -4.7 cell division protein ZapD compare
ABID97_RS07360 -1.2 -6.0 response regulator transcription factor compare
ABID97_RS11290 -1.2 -0.6 DNA repair protein RadC compare
ABID97_RS08430 -1.2 -1.7 tryptophan synthase subunit beta compare
ABID97_RS17595 -1.2 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS19550 -1.2 -0.9 phosphatase PAP2 family protein compare
ABID97_RS12025 -1.2 -2.4 OBAP family protein compare
ABID97_RS15100 -1.2 -1.9 helix-turn-helix transcriptional regulator compare
ABID97_RS16780 -1.2 -1.3 polysaccharide deacetylase family protein compare
ABID97_RS24055 -1.1 -2.3 TetR/AcrR family transcriptional regulator compare
ABID97_RS09270 -1.1 -2.5 exodeoxyribonuclease VII small subunit compare
ABID97_RS25340 -1.1 -4.5 apolipoprotein N-acyltransferase compare
ABID97_RS03855 -1.1 -1.7 ABC transporter ATP-binding protein compare
ABID97_RS19385 -1.1 -2.9 short-chain fatty acyl-CoA regulator family protein compare
ABID97_RS09610 -1.1 -1.7 Cro/CI family transcriptional regulator compare
ABID97_RS16155 -1.1 -1.4 universal stress protein compare
ABID97_RS22965 -1.1 -6.6 ClpXP protease specificity-enhancing factor compare
ABID97_RS17635 -1.1 -1.3 presqualene diphosphate synthase HpnD compare
ABID97_RS08890 -1.1 -1.3 aromatic-ring-hydroxylating dioxygenase subunit beta compare
ABID97_RS17590 -1.1 -5.1 endopeptidase La compare
ABID97_RS05235 -1.1 -0.6 PA2169 family four-helix-bundle protein compare
ABID97_RS27055 -1.0 -0.7 MFS transporter compare
ABID97_RS14920 -1.0 -5.0 IclR family transcriptional regulator compare
ABID97_RS11235 -1.0 -1.6 NAD-dependent succinate-semialdehyde dehydrogenase compare
ABID97_RS26465 -1.0 -1.0 cytochrome c oxidase subunit II compare
ABID97_RS05065 -1.0 -4.6 type VI secretion system ATPase TssH compare
ABID97_RS08330 -1.0 -5.6 RNA polymerase sigma factor RpoE compare
ABID97_RS19025 -1.0 -0.6 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS12405 -1.0 -0.9 peptidoglycan editing factor PgeF compare
ABID97_RS04890 -1.0 -4.6 cation:proton antiporter compare
ABID97_RS17640 -1.0 -0.9 hydroxysqualene dehydroxylase HpnE compare
ABID97_RS06825 -1.0 -1.5 LysR family transcriptional regulator compare
ABID97_RS27545 -1.0 -2.7 NADPH-dependent 2,4-dienoyl-CoA reductase compare
ABID97_RS09490 -1.0 -0.9 LapA family protein compare
ABID97_RS03910 -1.0 -1.1 orotate phosphoribosyltransferase compare
ABID97_RS13250 -1.0 -1.5 3-oxoacid CoA-transferase subunit B compare
ABID97_RS22975 -0.9 -3.1 cytochrome c1 compare
ABID97_RS12910 -0.9 -1.7 ATP-binding protein compare
ABID97_RS17135 -0.9 -5.8 RIP metalloprotease RseP compare
ABID97_RS13615 -0.9 -1.0 HypC/HybG/HupF family hydrogenase formation chaperone compare
ABID97_RS09800 -0.9 -0.7 hypothetical protein compare
ABID97_RS28620 -0.9 -2.2 CoA transferase compare
ABID97_RS23320 -0.9 -4.4 c-type cytochrome biogenesis protein CcsB compare
ABID97_RS26680 -0.9 -0.9 AAA family ATPase compare
ABID97_RS27170 -0.9 -0.9 hypothetical protein compare
ABID97_RS09180 -0.9 -3.2 DNA polymerase I compare
ABID97_RS19465 -0.9 -1.2 CoA transferase compare
ABID97_RS16910 -0.9 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS00880 -0.9 -3.7 AMP nucleosidase compare
ABID97_RS22985 -0.9 -1.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABID97_RS12140 -0.9 -4.9 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS14120 -0.9 -3.4 C40 family peptidase compare
ABID97_RS12180 -0.9 -1.0 hypothetical protein compare
ABID97_RS24965 -0.9 -3.8 peptidoglycan DD-metalloendopeptidase family protein compare
ABID97_RS16470 -0.9 -1.1 translational GTPase TypA compare
ABID97_RS13775 -0.9 -1.1 hypothetical protein compare
ABID97_RS25845 -0.9 -0.9 sugar ABC transporter permease compare
ABID97_RS21930 -0.9 -1.4 adenylosuccinate synthetase compare
ABID97_RS06450 -0.9 -1.5 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS04480 -0.9 -1.6 magnesium/cobalt transporter CorA compare
ABID97_RS13990 -0.9 -2.0 amino acid aminotransferase compare
ABID97_RS17960 -0.9 -2.1 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS21510 -0.9 -1.0 DUF4880 domain-containing protein compare
ABID97_RS27040 -0.9 -1.8 NAD(P)/FAD-dependent oxidoreductase compare
ABID97_RS09665 -0.9 -1.0 tRNA-Met compare
ABID97_RS22980 -0.8 -3.8 cytochrome bc complex cytochrome b subunit compare
ABID97_RS24370 -0.8 -1.8 DUF1841 family protein compare
ABID97_RS27630 -0.8 -1.9 AraC family transcriptional regulator compare
ABID97_RS20665 -0.8 -1.0 NUDIX domain-containing protein compare
ABID97_RS29425 -0.8 -1.3 LysR family transcriptional regulator compare
ABID97_RS02510 -0.8 -7.0 NADP-dependent malic enzyme compare
ABID97_RS14980 -0.8 -2.8 hypothetical protein compare
ABID97_RS23360 -0.8 -0.5 hypothetical protein compare
ABID97_RS25910 -0.8 -1.7 FAD-binding oxidoreductase compare
ABID97_RS08695 -0.8 -4.5 permease compare
ABID97_RS19235 -0.8 -1.9 LysR substrate-binding domain-containing protein compare
ABID97_RS09595 -0.8 -1.6 Arc family DNA-binding protein compare
ABID97_RS13265 -0.8 -1.2 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS16055 -0.8 -1.1 aromatic-ring-hydroxylating dioxygenase subunit beta compare
ABID97_RS29355 -0.8 -1.4 bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase compare
ABID97_RS13925 -0.8 -2.4 GntR family transcriptional regulator compare
ABID97_RS04885 -0.8 -5.0 YbdK family carboxylate-amine ligase compare
ABID97_RS18955 -0.8 -1.0 branched-chain amino acid ABC transporter permease compare
ABID97_RS26730 -0.8 -1.8 TetR family transcriptional regulator C-terminal domain-containing protein compare
ABID97_RS23220 -0.8 -0.9 glutamate synthase subunit beta compare
ABID97_RS14285 -0.8 -1.7 phosphoribosyltransferase compare
ABID97_RS24420 -0.8 -1.8 translocation/assembly module TamB domain-containing protein compare
ABID97_RS06520 -0.8 -1.0 SAM-dependent methyltransferase compare
ABID97_RS23325 -0.8 -3.0 cytochrome c biogenesis protein ResB compare
ABID97_RS20040 -0.7 -0.9 amino acid ABC transporter ATP-binding protein compare
ABID97_RS13275 -0.7 -1.6 MDR family oxidoreductase compare
ABID97_RS19220 -0.7 -0.5 DNA polymerase Y family protein compare
ABID97_RS03830 -0.7 -4.1 AmpG family muropeptide MFS transporter compare
ABID97_RS26080 -0.7 -1.2 LytTR family DNA-binding domain-containing protein compare
ABID97_RS15010 -0.7 -1.4 cytochrome c-550 PedF compare
ABID97_RS10120 -0.7 -0.7 LysR family transcriptional regulator compare
ABID97_RS03555 -0.7 -0.8 (2Fe-2S)-binding protein compare
ABID97_RS09315 -0.7 -0.7 substrate-binding domain-containing protein compare
ABID97_RS05385 -0.7 -1.9 dienelactone hydrolase family protein compare
ABID97_RS04880 -0.7 -2.3 helix-turn-helix domain-containing protein compare
ABID97_RS08240 -0.7 -0.7 heme biosynthesis HemY N-terminal domain-containing protein compare
ABID97_RS08165 -0.7 -1.9 sigma-70 family RNA polymerase sigma factor compare


Specific Phenotypes

None in this experiment

For Variovorax sp. OAS795 in stress experiments

For stress Sodium Chloride across organisms