Experiment set7S933 for Variovorax sp. OAS795

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NLDM_defined with ATCC Wolfe's mineral mix 8 X

Group: stress
Media: NLDM_defined + 8X ATCC Wolfe's mineral mix
Culturing: Variovorax_OAS795_ML2, tube, Aerobic, at 30 (C)
By: Pete Andeer on 6-Dec-25
Media components: 1 mM Ammonium chloride, 3.3 mM Potassium Chloride, 0.812 mM Magnesium Sulfate Heptahydrate, 0.68 mM Calcium chloride dihydrate, 4.05 mM Disodium phosphate, 0.95 mM Sodium phosphate monobasic, ATCC Wolfe's mineral mix (5 mg/L EDTA, 3 mg/L Magnesium Sulfate Heptahydrate, 5 mg/L Manganese (II) sulfate monohydrate, 10 mg/L Sodium Chloride, 1 mg/L Iron (II) sulfate heptahydrate, 1 mg/L Cobalt(II) nitrate hexahydrate, 1 mg/L Calcium chloride dihydrate, 1 mg/L Zinc sulfate heptahydrate, 0.1 mg/L Copper (II) sulfate pentahydrate, 0.1 mg/L Aluminum potassium sulfate dodecahydrate, 0.1 mg/L Boric Acid, 0.1 mg/L Sodium Molybdate Dihydrate, 0.01 mg/L Sodium selenite pentahydrate, 0.1 mg/L Sodium tungstate dihydrate, 0.2 mg/L Nickel (II) chloride hexahydrate), ATCC Wolfe's vitamin mix (20 ug/L Folic Acid, 100 ug/L Pyridoxine HCl, 50 ug/L Riboflavin, 20 ug/L biotin, 50 ug/L Thiamine HCl, 50 ug/L Nicotinic Acid, 50 ug/L calcium pantothenate, 1 ug/L Cyanocobalamin, 50 ug/L 4-Aminobenzoic acid, 50 ug/L Lipoic acid), NLDM_metabolites (875 uM Sucrose, 875 uM D-Glucose, 875 uM D-Trehalose dihydrate, 875 uM m-Inositol, 875 uM D-Xylose, 875 uM D-Mannitol, 875 uM N-Acetyl-D-Glucosamine, 525 uM Sodium L-Lactate, 525 uM D,L-Malic Acid, 525 uM Citric Acid, 525 uM Sodium succinate dibasic hexahydrate, 525 uM Sodium pyruvate, 525 uM a-Ketoglutaric acid disodium salt hydrate, 525 uM L-Citrulline, 175 uM L-Alanine, 175 uM L-Arginine, 175 uM L-Asparagine, 175 uM L-Aspartic Acid, 175 uM L-Cysteine, 175 uM L-Glutamic acid, 175 uM L-Glutamine, 175 uM Glycine, 175 uM L-Histidine, 175 uM L-Isoleucine, 175 uM L-Leucine, 175 uM L-Lysine, 175 uM L-Methionine, 175 uM L-Phenylalanine, 175 uM L-Proline, 175 uM L-Serine, 175 uM L-Threonine, 175 uM L-Tryptophan, 175 uM L-tyrosine, 175 uM L-Valine, 17.5 uM 5-methyluridine, 17.5 uM Adenine hydrochloride hydrate, 17.5 uM Adenosine, 17.5 uM Cytidine, 17.5 uM Cytosine, 17.5 uM Guanine, 17.5 uM Guanosine, 17.5 uM Hypoxanthine, 17.5 uM Inosine, 17.5 uM Thymine, 17.5 uM Uracil, 17.5 uM Uridine, 17.5 uM Xanthine, 17.5 uM Xanthosine, 17.5 uM Gamma-Aminobutyric Acid Hydrochloride, 17.5 uM Ectoine, 17.5 uM Betaine, 17.5 uM N-Acetyl-glutamic acid, 17.5 uM Nicotinamide, 17.5 uM L-Ornithine, 17.5 uM Shikimic Acid, 17.5 uM spermidine, 17.5 uM Taurine, 17.5 uM Trigonelline HCl, 17.5 uM Carnitine Hydrochloride, 17.5 uM Choline chloride, 17.5 uM n-Acetyl-glutamine, 17.5 uM n-Acetyl-lysine, 17.5 uM n-Acetyl-muramic acid, 17.5 uM sn-glycero-3-phosphocholine)

ATCC Wolfe's mineral mix 8x includes: 40 mg/L EDTA, 24 mg/L Magnesium Sulfate Heptahydrate, 40 mg/L Manganese (II) sulfate monohydrate, 80 mg/L Sodium Chloride, 8 mg/L Iron (II) sulfate heptahydrate, 8 mg/L Cobalt(II) nitrate hexahydrate, 8 mg/L Calcium chloride dihydrate, 8 mg/L Zinc sulfate heptahydrate, 0.8 mg/L Copper (II) sulfate pentahydrate, 0.8 mg/L Aluminum potassium sulfate dodecahydrate, 0.8 mg/L Boric Acid, 0.8 mg/L Sodium Molybdate Dihydrate, 0.08 mg/L Sodium selenite pentahydrate, 0.8 mg/L Sodium tungstate dihydrate, 1.6 mg/L Nickel (II) chloride hexahydrate (final concentrations)

Specific Phenotypes

For 2 genes in this experiment

For stress ATCC Wolfe's mineral mix in Variovorax sp. OAS795

For stress ATCC Wolfe's mineral mix across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.