Experiment set7S930 for Variovorax sp. OAS795

Compare to:

NLDM_defined with ATCC Wolfe's mineral mix 10 X

200 most important genes:

  gene name fitness t score description  
ABID97_RS14105 -5.1 -3.5 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS12460 -5.1 -3.5 acetoacetyl-CoA reductase compare
ABID97_RS05275 -4.9 -3.3 anthranilate phosphoribosyltransferase compare
ABID97_RS07285 -4.5 -3.9 DUF502 domain-containing protein compare
ABID97_RS17265 -4.3 -2.8 two-component system response regulator OmpR compare
ABID97_RS24945 -4.1 -12.3 cation diffusion facilitator family transporter compare
ABID97_RS22620 -4.1 -6.9 response regulator transcription factor compare
ABID97_RS14615 -3.9 -3.9 phosphate signaling complex protein PhoU compare
ABID97_RS14100 -3.8 -10.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS02605 -3.8 -13.5 TMEM165/GDT1 family protein compare
ABID97_RS00880 -3.8 -14.3 AMP nucleosidase compare
ABID97_RS17600 -3.8 -3.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS03680 -3.4 -10.0 lysophospholipid transporter LplT compare
ABID97_RS23450 -3.3 -3.9 MBOAT family protein compare
ABID97_RS05280 -3.3 -3.2 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS05670 -3.2 -2.2 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS05765 -3.2 -2.2 UDP-glucose 4-epimerase GalE compare
ABID97_RS23040 -3.2 -10.6 polysaccharide biosynthesis/export family protein compare
ABID97_RS07500 -3.2 -3.7 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS22625 -3.2 -11.7 HAMP domain-containing sensor histidine kinase compare
ABID97_RS03800 -3.1 -2.1 O-antigen ligase family protein compare
ABID97_RS09275 -3.1 -5.1 polyprenyl synthetase family protein compare
ABID97_RS23455 -3.1 -3.0 hypothetical protein compare
ABID97_RS25340 -3.0 -11.2 apolipoprotein N-acyltransferase compare
ABID97_RS16450 -2.8 -11.8 anti-sigma factor compare
ABID97_RS08425 -2.8 -6.2 tryptophan synthase subunit alpha compare
ABID97_RS23485 -2.8 -2.5 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABID97_RS17895 -2.7 -8.5 transcriptional regulator NrdR compare
ABID97_RS02455 -2.7 -5.9 nucleotidyltransferase family protein compare
ABID97_RS03805 -2.6 -1.9 ATP-binding protein compare
ABID97_RS23360 -2.5 -1.3 hypothetical protein compare
ABID97_RS05750 -2.4 -2.3 glycosyltransferase compare
ABID97_RS14285 -2.4 -4.1 phosphoribosyltransferase compare
ABID97_RS17850 -2.3 -1.1 tetratricopeptide repeat protein compare
ABID97_RS05755 -2.2 -2.6 glycosyltransferase compare
ABID97_RS03910 -2.2 -1.5 orotate phosphoribosyltransferase compare
ABID97_RS06450 -2.1 -2.1 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS10885 -2.1 -6.1 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS14255 -2.1 -7.4 GTPase HflX compare
ABID97_RS08430 -2.0 -2.0 tryptophan synthase subunit beta compare
ABID97_RS17635 -2.0 -2.8 presqualene diphosphate synthase HpnD compare
ABID97_RS08480 -2.0 -1.9 citrate synthase compare
ABID97_RS14505 -2.0 -11.3 hypothetical protein compare
ABID97_RS16470 -2.0 -1.9 translational GTPase TypA compare
ABID97_RS23915 -2.0 -3.8 heme o synthase compare
ABID97_RS12575 -2.0 -1.3 ATP-grasp domain-containing protein compare
ABID97_RS25390 -2.0 -9.6 23S ribosomal RNA compare
ABID97_RS23030 -2.0 -8.4 polysaccharide biosynthesis tyrosine autokinase compare
ABID97_RS23115 -1.9 -8.8 dicarboxylate/amino acid:cation symporter compare
ABID97_RS06460 -1.9 -1.3 sigma 54-interacting transcriptional regulator compare
ABID97_RS17270 -1.9 -6.5 ATP-binding protein compare
ABID97_RS05740 -1.9 -4.2 glycosyltransferase family A protein compare
ABID97_RS17360 -1.8 -2.8 alpha/beta hydrolase compare
ABID97_RS16910 -1.8 -7.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS05065 -1.8 -4.8 type VI secretion system ATPase TssH compare
ABID97_RS23025 -1.7 -9.4 sugar transferase compare
ABID97_RS19220 -1.6 -1.3 DNA polymerase Y family protein compare
ABID97_RS17590 -1.6 -9.9 endopeptidase La compare
ABID97_RS02340 -1.6 -6.3 ATP-dependent RNA helicase DbpA compare
ABID97_RS06420 -1.6 -8.6 ATP-binding protein compare
ABID97_RS14625 -1.6 -4.1 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS04505 -1.6 -2.3 ferric iron uptake transcriptional regulator compare
ABID97_RS03360 -1.6 -11.9 LysR family transcriptional regulator compare
ABID97_RS20715 -1.6 -7.3 heavy metal translocating P-type ATPase compare
ABID97_RS04760 -1.6 -1.5 SPOR domain-containing protein compare
ABID97_RS17970 -1.6 -5.8 protein TolQ compare
ABID97_RS23045 -1.6 -7.5 phosphatase PAP2 family protein compare
ABID97_RS07000 -1.5 -7.5 threonine ammonia-lyase, biosynthetic compare
ABID97_RS23015 -1.5 -6.8 glycosyltransferase family 4 protein compare
ABID97_RS19965 -1.5 -7.8 glycerol kinase GlpK compare
ABID97_RS17050 -1.5 -1.7 RlmE family RNA methyltransferase compare
ABID97_RS16695 -1.5 -8.9 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS06255 -1.5 -2.9 cell division protein FtsA compare
ABID97_RS06140 -1.5 -2.4 DUF484 family protein compare
ABID97_RS07615 -1.5 -2.7 ATP-binding protein compare
ABID97_RS20520 -1.4 -1.2 polyribonucleotide nucleotidyltransferase compare
ABID97_RS07610 -1.4 -1.1 response regulator transcription factor compare
ABID97_RS13860 -1.4 -5.1 hypothetical protein compare
ABID97_RS16565 -1.4 -5.5 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS14115 -1.4 -4.1 dihydrolipoyl dehydrogenase compare
ABID97_RS16435 -1.4 -4.2 SsrA-binding protein SmpB compare
ABID97_RS08350 -1.4 -8.4 translation elongation factor 4 compare
ABID97_RS06050 -1.4 -1.6 DUF3025 domain-containing protein compare
ABID97_RS15100 -1.3 -2.3 helix-turn-helix transcriptional regulator compare
ABID97_RS07380 -1.3 -3.8 S41 family peptidase compare
ABID97_RS16535 -1.3 -4.9 arginine/lysine/ornithine decarboxylase compare
ABID97_RS24370 -1.3 -2.2 DUF1841 family protein compare
ABID97_RS24170 -1.3 -4.8 ATP-binding protein compare
ABID97_RS20940 -1.3 -1.5 CBS domain-containing protein compare
ABID97_RS26680 -1.3 -1.9 AAA family ATPase compare
ABID97_RS08340 -1.3 -7.1 MucB/RseB C-terminal domain-containing protein compare
ABID97_RS01175 -1.3 -4.8 D-xylose ABC transporter substrate-binding protein compare
ABID97_RS07850 -1.3 -6.1 ABC transporter ATP-binding protein compare
ABID97_RS17595 -1.3 -6.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS01205 -1.3 -2.1 LacI family DNA-binding transcriptional regulator compare
ABID97_RS24730 -1.2 -2.2 Fis family transcriptional regulator compare
ABID97_RS02420 -1.2 -4.7 protealysin inhibitor emfourin compare
ABID97_RS07840 -1.2 -5.4 branched-chain amino acid ABC transporter permease compare
ABID97_RS09830 -1.2 -1.1 hypothetical protein compare
ABID97_RS14460 -1.2 -1.7 hypothetical protein compare
ABID97_RS23665 -1.2 -1.2 DNA-directed RNA polymerase subunit omega compare
ABID97_RS26290 -1.2 -1.6 LysR substrate-binding domain-containing protein compare
ABID97_RS07845 -1.2 -8.2 ABC transporter ATP-binding protein compare
ABID97_RS06520 -1.2 -1.1 SAM-dependent methyltransferase compare
ABID97_RS09610 -1.2 -2.1 Cro/CI family transcriptional regulator compare
ABID97_RS21385 -1.2 -3.2 phosphomannomutase/phosphoglucomutase compare
ABID97_RS10355 -1.2 -5.0 FadR/GntR family transcriptional regulator compare
ABID97_RS02855 -1.2 -6.1 sensor histidine kinase N-terminal domain-containing protein compare
ABID97_RS00705 -1.2 -5.9 (2Fe-2S) ferredoxin domain-containing protein compare
ABID97_RS23330 -1.1 -5.7 c-type cytochrome compare
ABID97_RS14495 -1.1 -6.2 hypothetical protein compare
ABID97_RS02850 -1.1 -5.1 response regulator transcription factor compare
ABID97_RS27085 -1.1 -0.9 DNA alkylation repair protein compare
ABID97_RS08775 -1.1 -0.9 ribosome small subunit-dependent GTPase A compare
ABID97_RS25405 -1.1 -6.8 16S ribosomal RNA compare
ABID97_RS02530 -1.1 -5.0 peptidylprolyl isomerase compare
ABID97_RS06275 -1.1 -1.1 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS09595 -1.1 -1.7 Arc family DNA-binding protein compare
ABID97_RS21545 -1.1 -1.5 L,D-transpeptidase compare
ABID97_RS06425 -1.1 -2.9 PP0621 family protein compare
ABID97_RS05480 -1.1 -7.1 EAL domain-containing protein compare
ABID97_RS04500 -1.1 -1.7 HPr(Ser) kinase/phosphatase compare
ABID97_RS03265 -1.1 -1.7 dioxygenase compare
ABID97_RS14215 -1.0 -3.0 type IV pilus biogenesis/stability protein PilW compare
ABID97_RS02610 -1.0 -4.1 RNA-binding protein compare
ABID97_RS09270 -1.0 -2.0 exodeoxyribonuclease VII small subunit compare
ABID97_RS01650 -1.0 -1.3 orotidine-5'-phosphate decarboxylase compare
ABID97_RS11355 -1.0 -1.5 acyl-CoA dehydrogenase family protein compare
ABID97_RS15215 -1.0 -0.9 lysozyme compare
ABID97_RS23000 -1.0 -8.1 YjbH domain-containing protein compare
ABID97_RS05725 -1.0 -5.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABID97_RS28380 -1.0 -1.4 ABC transporter ATP-binding protein compare
ABID97_RS11065 -1.0 -1.6 Gfo/Idh/MocA family oxidoreductase compare
ABID97_RS10800 -1.0 -3.5 alkyl hydroperoxide reductase subunit C compare
ABID97_RS27780 -1.0 -0.9 efflux RND transporter periplasmic adaptor subunit compare
ABID97_RS10720 -1.0 -4.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS24920 -0.9 -0.8 Holliday junction branch migration protein RuvA compare
ABID97_RS22975 -0.9 -2.8 cytochrome c1 compare
ABID97_RS01165 -0.9 -4.0 ATP-binding cassette domain-containing protein compare
ABID97_RS09180 -0.9 -2.5 DNA polymerase I compare
ABID97_RS14920 -0.9 -5.9 IclR family transcriptional regulator compare
ABID97_RS00110 -0.9 -1.4 SGNH/GDSL hydrolase family protein compare
ABID97_RS00285 -0.9 -3.2 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
ABID97_RS10880 -0.9 -1.8 Mth938-like domain-containing protein compare
ABID97_RS16600 -0.9 -4.0 CysB family HTH-type transcriptional regulator compare
ABID97_RS07855 -0.9 -1.7 ABC transporter ATP-binding protein compare
ABID97_RS18325 -0.9 -1.0 hypothetical protein compare
ABID97_RS01280 -0.9 -1.3 flavodoxin family protein compare
ABID97_RS02910 -0.9 -3.9 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
ABID97_RS08010 -0.9 -2.2 alpha-hydroxy acid oxidase compare
ABID97_RS23910 -0.9 -4.6 SCO family protein compare
ABID97_RS20740 -0.9 -4.9 FUSC family membrane protein compare
ABID97_RS24940 -0.9 -4.6 D-aminoacyl-tRNA deacylase compare
ABID97_RS25485 -0.9 -1.8 fumarylacetoacetate hydrolase family protein compare
ABID97_RS05925 -0.9 -4.7 LysR substrate-binding domain-containing protein compare
ABID97_RS20265 -0.9 -2.0 site-specific tyrosine recombinase XerD compare
ABID97_RS25040 -0.9 -4.3 peptide chain release factor 3 compare
ABID97_RS27925 -0.9 -2.2 acetaldehyde dehydrogenase (acetylating) compare
ABID97_RS07015 -0.9 -5.9 OsmC family protein compare
ABID97_RS21055 -0.8 -3.7 2OG-Fe dioxygenase family protein compare
ABID97_RS28020 -0.8 -1.0 ABC transporter ATP-binding protein compare
ABID97_RS02515 -0.8 -4.4 ribonuclease domain-containing protein compare
ABID97_RS19760 -0.8 -4.1 ROK family transcriptional regulator compare
ABID97_RS08720 -0.8 -5.7 DUF47 domain-containing protein compare
ABID97_RS22595 -0.8 -3.8 3',5'-nucleoside bisphosphate phosphatase compare
ABID97_RS03775 -0.8 -1.8 hypothetical protein compare
ABID97_RS04610 -0.8 -4.2 potassium transporter Kup compare
ABID97_RS23210 -0.8 -3.9 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABID97_RS23790 -0.8 -1.9 ATP-binding cassette domain-containing protein compare
ABID97_RS05645 -0.8 -5.0 FIST N-terminal domain-containing protein compare
ABID97_RS08435 -0.8 -1.2 phosphoribosylanthranilate isomerase compare
ABID97_RS06905 -0.8 -5.2 ABC transporter ATP-binding protein compare
ABID97_RS16955 -0.8 -1.4 biopolymer transporter ExbD compare
ABID97_RS24705 -0.8 -3.5 response regulator compare
ABID97_RS03830 -0.8 -4.6 AmpG family muropeptide MFS transporter compare
ABID97_RS14610 -0.8 -2.9 phosphate ABC transporter ATP-binding protein PstB compare
ABID97_RS11290 -0.8 -0.6 DNA repair protein RadC compare
ABID97_RS02230 -0.8 -5.4 Stp1/IreP family PP2C-type Ser/Thr phosphatase compare
ABID97_RS07030 -0.8 -4.9 ABC transporter permease compare
ABID97_RS06390 -0.8 -2.1 carbohydrate kinase family protein compare
ABID97_RS22990 -0.8 -1.6 hypothetical protein compare
ABID97_RS23705 -0.8 -2.5 DNA repair protein RecN compare
ABID97_RS23995 -0.8 -2.5 MaoC family dehydratase compare
ABID97_RS14160 -0.8 -2.3 cell division protein ZapE compare
ABID97_RS23710 -0.8 -4.4 RNase adapter RapZ compare
ABID97_RS03515 -0.8 -4.2 amino acid synthesis family protein compare
ABID97_RS16595 -0.8 -2.2 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS03780 -0.8 -1.9 glycerate kinase compare
ABID97_RS12300 -0.8 -2.4 hypothetical protein compare
ABID97_RS14755 -0.8 -4.2 'GTP 3',8-cyclase MoaA' pseudo=_no_value transl_table=11 compare
ABID97_RS07010 -0.8 -5.7 porin compare
ABID97_RS01860 -0.8 -6.6 indolepyruvate ferredoxin oxidoreductase family protein compare
ABID97_RS14700 -0.7 -1.7 recombination mediator RecR compare
ABID97_RS22985 -0.7 -1.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABID97_RS19695 -0.7 -0.9 alpha/beta fold hydrolase compare
ABID97_RS28565 -0.7 -1.9 cupin domain-containing protein compare
ABID97_RS10675 -0.7 -3.0 SurA N-terminal domain-containing protein compare
ABID97_RS19545 -0.7 -1.9 phosphatase PAP2 family protein compare
ABID97_RS16295 -0.7 -2.6 chemotaxis protein CheB compare
ABID97_RS09150 -0.7 -3.5 UvrD-helicase domain-containing protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress ATCC Wolfe's mineral mix in Variovorax sp. OAS795

For stress ATCC Wolfe's mineral mix across organisms