Experiment set7S80 for Escherichia coli BL21

Compare to:

CM1

200 most important genes:

  gene name fitness t score description  
ECD_00392 -4.5 -4.4 HU, DNA-binding transcriptional regulator, beta subunit compare
ECD_03729 -4.4 -1.4 TatABCE protein translocation system subunit compare
ECD_02302 -3.5 -4.2 nucleoside (except guanosine) transporter compare
ECD_01084 -3.3 -4.5 DUF177 family protein compare
ECD_03877 -3.3 -2.4 HU, DNA-binding transcriptional regulator, alpha subunit compare
ECD_02423 -3.2 -3.0 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor compare
ECD_t00083 -3.2 -1.4 tRNA-Leu compare
ECD_00142 -3.2 -2.2 poly(A) polymerase compare
ECD_03308 -3.0 -1.7 PanD autocleavage accelerator, panothenate synthesis compare
ECD_01681 -2.8 -1.6 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_01629 -2.8 -1.3 transcriptional repressor, hypoxanthine-binding compare
ECD_02393 -2.7 -3.8 polyphosphate kinase, component of RNA degradosome compare
ECD_00420 -2.6 -1.2 adenine phosphoribosyltransferase compare
ECD_03848 -2.6 -6.9 transcriptional repressor of fabA and fabB compare
ECD_01972 -2.6 -3.0 uridine/cytidine kinase compare
ECD_01794 -2.6 -4.7 DUF2527 family heat-induced protein compare
ECD_01230 -2.5 -1.8 outer membrane protein W compare
ECD_01167 -2.5 -1.2 murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A compare
ECD_04260 -2.5 -4.7 purine nucleoside phosphorylase 1; nicotinamide 1-beta-D-riboside phosphorylase compare
ECD_00061 -2.4 -6.6 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase compare
ECD_02826 -2.4 -1.3 hypothetical protein compare
ECD_03501 -2.4 -5.3 UPF0701 family protein compare
ECD_00342 -2.4 -2.8 nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function compare
ECD_02162 -2.4 -1.1 ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance compare
ECD_02820 -2.4 -1.5 hypothetical protein compare
ECD_01122 -2.4 -2.2 spermidine/putrescine ABC transporter permease compare
ECD_03506 -2.3 -1.0 RNA polymerase, omega subunit compare
ECD_r00015 -2.3 -5.1 23S ribosomal RNA compare
ECD_02694 -2.3 -1.3 putative LuxR family transcriptional regulator compare
ECD_01121 -2.3 -4.6 spermidine/putrescine ABC transporter periplasmic binding protein compare
ECD_02655 -2.2 -4.2 L-fucose mutarotase compare
ECD_03731 -2.2 -2.6 TatABCE protein translocation system subunit compare
ECD_02996 -2.2 -5.1 transcriptional repressor of the aga regulon compare
ECD_01827 -2.2 -4.5 murein DD-endopeptidase, space-maker hydrolase, septation protein compare
ECD_01624 -2.2 -1.8 glutaredoxin-4 compare
ECD_00311 -2.2 -1.7 regulator protein that represses frmRAB operon compare
ECD_04259 -2.2 -3.2 phosphopentomutase compare
ECD_03624 -2.1 -7.7 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein compare
ECD_03031 -2.1 -3.8 polynucleotide phosphorylase/polyadenylase compare
ECD_02774 -2.1 -3.0 Zn-dependent metalloprotease-related protein compare
ECD_02899 -2.1 -1.5 inner membrane protein compare
ECD_01755 -2.1 -1.8 putative diguanylate cyclase compare
ECD_02409 -2.0 -7.8 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent compare
ECD_01793 -2.0 -2.6 stress protein, member of the CspA-family compare
ECD_03687 -2.0 -1.1 site-specific tyrosine recombinase compare
ECD_03660 -2.0 -0.9 rho operon leader peptide compare
ECD_01774 -2.0 -1.3 ribonuclease D compare
ECD_02828 -1.9 -7.2 Polysialic acid transport protein kpsM compare
ECD_04357 -1.9 -4.6 small predicted membrane protein compare
ECD_03817 -1.9 -2.3 peptidase component of the HslUV protease compare
ECD_03134 -1.9 -6.3 ssDNA-binding protein, function unknown compare
ECD_02681 -1.8 -4.2 DUF903 family verified lipoprotein compare
ECD_03983 -1.8 -5.6 sensory histidine kinase in two-component regulatory system with BasR compare
ECD_01198 -1.8 -2.2 putative invasin compare
ECD_02470 -1.8 -2.9 ATP-dependent RNA helicase compare
ECD_01081 -1.8 -2.2 uncharacterized protein compare
ECD_04121 -1.8 -2.2 protein inhibitor of RNase E compare
ECD_02819 -1.7 -7.8 KpsS protein compare
ECD_02814 -1.7 -4.3 hypothetical protein compare
ECD_00480 -1.7 -2.1 FimA-like protein compare
ECD_02736 -1.7 -4.0 glycine cleavage complex lipoylprotein compare
ECD_02857 -1.7 -0.9 hypothetical protein compare
ECD_02524 -1.7 -3.2 DUF2892 family inner membrane rhodanese compare
ECD_02815 -1.7 -8.5 Capsule polysaccharide export inner-membrane protein kpsE compare
ECD_02732 -1.7 -2.4 UPF0267 family protein compare
ECD_03121 -1.7 -0.7 putative membrane protein compare
ECD_02529 -1.7 -2.0 hydrogen donor for NrdEF electron transport system; glutaredoxin-like protein compare
ECD_03001 -1.6 -1.3 putative phosphotransferase system enzyme subunit (N-acetyl-galactosamine/galactosamine PTS system enzyme IIA component) compare
ECD_02710 -1.6 -2.0 CTP:molybdopterin cytidylyltransferase compare
ECD_01479 -1.6 -1.5 putative membrane-bound diguanylate cyclase compare
ECD_02816 -1.5 -9.3 KpsD protein compare
ECD_00574 -1.5 -3.3 alkyl hydroperoxide reductase, C22 subunit compare
ECD_02854 -1.5 -8.7 hypothetical protein compare
ECD_02335 -1.5 -2.3 N-acetylmuramoyl-l-alanine amidase I compare
ECD_02853 -1.5 -2.8 hypothetical protein compare
ECD_02858 -1.5 -5.9 hypothetical protein compare
ECD_02818 -1.5 -7.8 Capsule polysaccharide export protein KpsC compare
ECD_03256 -1.5 -2.6 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_02812 -1.5 -6.2 hypothetical protein compare
ECD_00626 -1.5 -2.2 putative ion transport compare
ECD_02798 -1.4 -5.2 hypothetical protein compare
ECD_02032 -1.4 -2.0 hydoxyethylthiazole kinase compare
ECD_03005 -1.4 -1.6 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_03500 -1.4 -3.0 ribonuclease PH compare
ECD_02817 -1.4 -8.3 KpsU protein compare
ECD_02951 -1.4 -1.0 antitoxinof the HigB-HigA toxin-antitoxin system compare
ECD_02268 -1.3 -6.2 long-chain fatty acid outer membrane transporter conserved
ECD_02851 -1.3 -7.1 putative saframycin Mx1 synthetase B compare
ECD_00833 -1.3 -3.1 Terminase, ATPase subunit compare
ECD_03571 -1.3 -0.6 DUF1375 family outer membrane protein compare
ECD_02661 -1.3 -2.5 cysteine sulfinate desulfinase compare
ECD_02855 -1.3 -6.9 hypothetical protein compare
ECD_00118 -1.3 -3.3 UPF0231 family protein compare
ECD_02797 -1.3 -7.7 integrase compare
ECD_00071 -1.3 -3.1 transcriptional DNA-binding transcriptional activator of sgrS sRNA compare
ECD_01124 -1.3 -1.3 spermidine/putrescine ABC transporter ATPase compare
ECD_02894 -1.3 -5.9 GCU-specific mRNA interferase toxin of the MqsR-MqsA toxin-antitoxin system; biofilm/motility regulator; anti-repressor compare
ECD_02396 -1.3 -2.2 uncharacterized protein compare
ECD_02901 -1.3 -2.6 quinol monooxygenase compare
ECD_03984 -1.3 -3.6 response regulator in two-component regulatory system with BasS compare
ECD_01645 -1.3 -0.9 pyruvate kinase I compare
ECD_01655 -1.3 -1.1 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
ECD_10005 -1.3 -0.9 Excisionase compare
ECD_01818 -1.3 -0.7 extracellular Colicin M immunity family protein compare
ECD_04384 -1.3 -1.7 small predicted membrane protein compare
ECD_02475 -1.3 -4.0 putative methyltransferase compare
ECD_03257 -1.3 -1.2 response regulator in two-component regulatory system with EnvZ compare
ECD_01498 -1.2 -0.8 NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase compare
ECD_02618 -1.2 -2.6 putative SDR family oxidoreductase compare
ECD_00993 -1.2 -0.8 cold shock gene compare
ECD_02737 -1.2 -4.2 aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex compare
ECD_03096 -1.2 -1.5 malate dehydrogenase, NAD(P)-binding compare
ECD_04354 -1.2 -1.8 nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor compare
ECD_03730 -1.2 -3.1 TatABCE protein translocation system subunit compare
ECD_03801 -1.2 -3.5 6-phosphofructokinase I compare
ECD_02459 -1.2 -1.6 gap repair protein compare
ECD_02811 -1.2 -4.3 hypothetical protein compare
ECD_03509 -1.2 -3.0 ATP-dependent DNA helicase compare
ECD_02244 -1.2 -2.7 putative semialdehyde dehydrogenase compare
ECD_02877 -1.2 -3.3 UPF0114 family putative inner membrane protein compare
ECD_02038 -1.2 -0.8 hypothetical protein compare
ECD_02116 -1.2 -2.6 spermidine nucleoid-associated protein compare
ECD_02938 -1.2 -4.4 G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase compare
ECD_02856 -1.2 -6.2 hypothetical protein compare
ECD_03436 -1.2 -2.4 putative regulatory protein compare
ECD_02622 -1.2 -2.0 7-carboxy-7-deazaguanine synthase; queosine biosynthesis compare
ECD_02930 -1.2 -1.5 transcriptional activator of ttdABT compare
ECD_02900 -1.2 -4.6 NADPH quinone reductase compare
ECD_02105 -1.2 -3.7 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase compare
ECD_02651 -1.2 -6.6 Ribose transport system permease protein rbsC compare
ECD_00434 -1.2 -0.7 putative DNA-binding transcriptional regulator compare
ECD_02869 -1.2 -2.7 maturation protease for hydrogenase 2 compare
ECD_00053 -1.2 -0.8 diadenosine tetraphosphatase compare
ECD_00803 -1.1 -0.8 repressor of biofilm formation by indole transport regulation compare
ECD_03876 -1.1 -3.6 DUF416 domain protein conserved
ECD_03818 -1.1 -1.2 essential cell division protein compare
ECD_02919 -1.1 -1.4 motility and biofilm regulator compare
ECD_01667 -1.1 -1.3 putative electron transfer flavoprotein, FAD-binding subunit compare
ECD_03612 -1.1 -4.4 phosphate ABC transporter periplasmic binding protein compare
ECD_01168 -1.1 -1.0 lytic murein endotransglycosylase E compare
ECD_00418 -1.1 -1.7 primosomal replication protein N'' compare
ECD_00378 -1.1 -0.8 hypothetical protein compare
ECD_01312 -1.1 -1.0 O-6-alkylguanine-DNA:cysteine-protein methyltransferase compare
ECD_00939 -1.1 -1.8 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
ECD_02852 -1.1 -2.7 hypothetical protein compare
ECD_00206 -1.0 -4.4 putative S-adenosyl-L-methionine-dependent methyltransferase compare
ECD_03425 -1.0 -0.9 putative hydrogenase, 4Fe-4S ferredoxin-type component compare
ECD_02908 -1.0 -3.4 hypothetical protein compare
ECD_03846 -1.0 -4.2 oxidative and nitrosative stress transcriptional regulator compare
ECD_00060 -1.0 -4.6 dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM-dependent compare
ECD_03249 -1.0 -2.9 adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP-ribose/NADH hydrolase compare
ECD_02621 -1.0 -3.4 hypothetical protein compare
ECD_02177 -1.0 -0.6 nucleoside triphosphatase compare
ECD_00838 -1.0 -1.6 putative phage tail protein compare
ECD_02975 -1.0 -2.8 redox-sensitive bicupin compare
ECD_03207 -1.0 -1.0 OsmC family protein compare
ECD_00930 -1.0 -1.2 M15A protease-related family periplasmic protein compare
ECD_04250 -1.0 -4.7 peptide chain release factor RF-3 compare
ECD_02623 -1.0 -1.8 TPM domain protein, putative phosphatase compare
ECD_03964 -1.0 -2.5 5-phospho-alpha-D-ribosyl 1,2-cyclic phosphate phosphodiesterase compare
ECD_02111 -1.0 -2.0 uncharacterized protein compare
ECD_00509 -1.0 -1.1 DLP12 prophage; putative lipoprotein compare
ECD_00438 -1.0 -0.6 copper-responsive regulon transcriptional regulator compare
ECD_03450 -1.0 -3.5 putative Rhs-family protein compare
ECD_03557 -1.0 -4.6 multidrug efflux system protein compare
ECD_01093 -1.0 -2.6 septation protein, ampicillin sensitivity compare
ECD_03289 -1.0 -6.0 d-gluconate inducible gluconate regulon transcriptional repressor compare
ECD_t00085 -1.0 -2.3 tRNA-Leu compare
ECD_02649 -0.9 -5.6 L-ribulokinase AraB-like protein compare
ECD_00702 -0.9 -2.5 periplasmic TolA-binding protein compare
ECD_01301 -0.9 -0.9 lipid hydroperoxide peroxidase compare
ECD_00904 -0.9 -0.8 LysR family putative transcriptional regulator compare
ECD_04218 -0.9 -3.2 metal-binding GTPase compare
ECD_01059 -0.9 -1.7 lipoprotein, DUF1439 family compare
ECD_01557 -0.9 -1.2 S- and N-oxide reductase, A subunit, periplasmic compare
ECD_04049 -0.9 -0.6 PspA/IM30 family protein compare
ECD_00940 -0.9 -0.8 aliphatic sulfonate ABC transporter periplasmic binding protein compare
ECD_02017 -0.9 -2.1 galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding compare
ECD_03243 -0.9 -3.9 DNA catabolic putative fimbrial transporter compare
ECD_00893 -0.9 -2.5 leucine-responsive global transcriptional regulator compare
ECD_03016 -0.9 -1.4 DnaA initiator-associating factor for replication initiation compare
ECD_03199 -0.9 -0.6 phi X174 lysis protein compare
ECD_00448 -0.9 -2.1 Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor compare
ECD_00143 -0.9 -3.8 glutamyl-Q tRNA(Asp) synthetase compare
ECD_02637 -0.9 -2.5 DUF446 family protein compare
ECD_00970 -0.9 -1.7 heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein compare
ECD_01302 -0.9 -1.8 L-Ala-D/L-Glu epimerase compare
ECD_00801 -0.9 -1.0 putative membrane-anchored diguanylate cyclase compare
ECD_02973 -0.9 -0.5 DUF805 family inner membrane protein compare
ECD_02021 -0.9 -2.7 D-tagatose 1,6-bisphosphate aldolase 2, subunit compare
ECD_02438 -0.9 -0.9 putative sugar ABC transporter permease compare
ECD_02825 -0.9 -0.9 Pyrophosphorylase compare
ECD_02473 -0.9 -0.9 autonomous glycyl radical cofactor compare
ECD_00081 -0.9 -1.9 transcriptional repressor-activator for carbon metabolism compare
ECD_00496 -0.9 -0.7 DLP12 prophage; putative DNA-binding transcriptional regulator compare
ECD_03338 -0.9 -2.4 DUF4049 family protein compare
ECD_03816 -0.8 -1.1 molecular chaperone and ATPase component of HslUV protease compare
ECD_02097 -0.8 -1.5 fructose-1-phosphate kinase compare
ECD_03643 -0.8 -3.8 UPF0438 family protein compare
ECD_01803 -0.8 -2.6 free methionine-(R)-sulfoxide reductase compare


Specific Phenotypes

For 11 genes in this experiment

For phage MOI 10 in Escherichia coli BL21

For phage MOI 10 across organisms