Experiment set7S652 for Pseudomonas segetis P6

Compare to:

Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Group: in planta
Media: + Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Culturing: Pseudo_segetis_P6_ML4b, pot, at 34 (C), (Solid)
By: Marta Torres on 15-Jun-24

Specific Phenotypes

For 3 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas segetis P6

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms

SEED Subsystems

Subsystem #Specific
ABC transporter dipeptide (TC 3.A.1.5.2) 1
Fermentations: Mixed acid 1
Pyruvate metabolism I: anaplerotic reactions, PEP 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
CO2 fixation into oxaloacetate (anaplerotic) 2 2 1
NAD salvage pathway II (PNC IV cycle) 5 4 1
C4 photosynthetic carbon assimilation cycle, NADP-ME type 7 4 1
partial TCA cycle (obligate autotrophs) 8 8 1
nitrogen remobilization from senescing leaves 8 6 1
C4 photosynthetic carbon assimilation cycle, NAD-ME type 11 6 1
formaldehyde assimilation I (serine pathway) 13 6 1
C4 photosynthetic carbon assimilation cycle, PEPCK type 14 9 1
mixed acid fermentation 16 10 1
gluconeogenesis II (Methanobacterium thermoautotrophicum) 18 9 1
ethene biosynthesis V (engineered) 25 18 1
Methanobacterium thermoautotrophicum biosynthetic metabolism 56 20 1