Experiment set7S604 for Pseudomonas segetis P6

Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Group: in planta
Media: + Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Culturing: Pseudo_segetis_P6_ML4b, pot, at 34 (C), (Solid)
By: Marta Torres on 15-Jun-24

Specific Phenotypes

For 5 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Pseudomonas segetis P6

For in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms

SEED Subsystems

Subsystem	#Specific
Methionine Biosynthesis	1
One-carbon metabolism by tetrahydropterines	1
Polyamine Metabolism	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Methionine metabolism
• Urea cycle and metabolism of amino groups
• Arginine and proline metabolism
• Glyoxylate and dicarboxylate metabolism
• One carbon pool by folate
• Biosynthesis of plant hormones

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
spermidine biosynthesis I	2	2	1
spermine biosynthesis	2	1	1
S-adenosyl-L-methionine salvage II	3	3	1
aminopropylcadaverine biosynthesis	3	3	1
L-methionine biosynthesis III	4	4	1
formaldehyde oxidation VII (THF pathway)	4	4	1
spermidine biosynthesis III	4	2	1
S-adenosyl-L-methionine salvage I	4	2	1
seleno-amino acid biosynthesis (plants)	5	3	1
L-methionine biosynthesis I	5	3	1
L-methionine biosynthesis II	6	5	1
superpathway of polyamine biosynthesis I	8	7	1
superpathway of polyamine biosynthesis II	8	6	1
superpathway of L-homoserine and L-methionine biosynthesis	8	6	1
superpathway of L-methionine biosynthesis (transsulfuration)	9	7	1
superpathway of S-adenosyl-L-methionine biosynthesis	9	7	1
L-methionine salvage cycle III	11	10	1
superpathway of L-methionine biosynthesis (by sulfhydrylation)	12	12	1
L-methionine salvage cycle I (bacteria and plants)	12	9	1
folate transformations I	13	9	1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II	15	13	1
purine nucleobases degradation I (anaerobic)	15	6	1
superpathway of arginine and polyamine biosynthesis	17	16	1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I	18	16	1
superpathway of seleno-compound metabolism	19	6	1
purine nucleobases degradation II (anaerobic)	24	16	1
aspartate superpathway	25	22	1