Experiment set7S60 for Escherichia coli BL21

Compare to:

N4

200 most important genes:

  gene name fitness t score description  
ECD_t00077 -3.4 -1.7 tRNA-Thr compare
ECD_02738 -3.2 -2.2 2-octaprenylphenol hydroxylase, FAD-dependent compare
ECD_00487 -3.2 -3.0 Excisionase compare
ECD_00634 -2.7 -1.9 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_04070 -2.4 -2.2 50S ribosomal subunit protein L9 compare
ECD_03037 -2.3 -3.1 ribosome maturation factor for 30S subunits compare
ECD_00053 -2.3 -3.0 diadenosine tetraphosphatase compare
ECD_03425 -2.3 -2.4 putative hydrogenase, 4Fe-4S ferredoxin-type component compare
ECD_04038 -2.3 -1.5 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_03488 -2.2 -2.5 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_00651 -2.1 -2.5 response regulator in two-component regulatory system with KdpD compare
ECD_02549 -2.1 -6.9 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_03238 -1.9 -3.4 D-ribulose-5-phosphate 3-epimerase compare
ECD_03797 -1.9 -4.2 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_03692 -1.9 -5.7 magnesium/nickel/cobalt transporter compare
ECD_02208 -1.9 -6.0 NADH:ubiquinone oxidoreductase, chain G compare
ECD_00933 -1.8 -3.4 outer membrane porin 1a (Ia compare
ECD_01479 -1.7 -3.0 putative membrane-bound diguanylate cyclase compare
ECD_03590 -1.7 -1.2 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_02404 -1.7 -1.9 BamABCDE complex OM biogenesis lipoprotein compare
ECD_00420 -1.7 -2.1 adenine phosphoribosyltransferase compare
ECD_00925 -1.6 -2.5 putative S-adenosyl-L-methionine-dependent methyltransferase compare
ECD_02202 -1.6 -3.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
ECD_03075 -1.6 -3.5 aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB compare
ECD_02507 -1.6 -1.1 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_02201 -1.5 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit N compare
ECD_02443 -1.5 -3.6 serine hydroxymethyltransferase compare
ECD_03625 -1.5 -1.8 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_02210 -1.5 -3.1 NADH:ubiquinone oxidoreductase, chain E compare
ECD_03897 -1.4 -3.1 glucosephosphate isomerase compare
ECD_02205 -1.4 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit J compare
ECD_02211 -1.4 -4.4 NADH:ubiquinone oxidoreductase, fused CD subunit compare
ECD_01775 -1.4 -1.9 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) compare
ECD_02463 -1.4 -3.3 back-translocating elongation factor EF4, GTPase compare
ECD_02508 -1.4 -1.5 tmRNA-binding trans-translation protein compare
ECD_04049 -1.4 -1.8 PspA/IM30 family protein compare
ECD_02765 -1.3 -3.2 transketolase 1, thiamine triphosphate-binding compare
ECD_01006 -1.3 -1.5 uncharacterized protein compare
ECD_01250 -1.3 -1.8 DNA topoisomerase I, omega subunit compare
ECD_00242 -1.3 -2.4 moco insertion factor for PaoABC aldehyde oxidoreductase compare
ECD_03257 -1.3 -1.8 response regulator in two-component regulatory system with EnvZ compare
ECD_00406 -1.2 -2.7 excision repair protein, alkyltransferase-like protein ATL compare
ECD_02212 -1.2 -4.2 NADH:ubiquinone oxidoreductase, chain B compare
ECD_02203 -1.2 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
ECD_01706 -1.2 -2.0 N,N'-diacetylchitobiose-specific enzyme IIC component of PTS compare
ECD_03017 -1.2 -1.9 outer membrane lipoprotein compare
ECD_01032 -1.2 -2.1 redox enzyme maturation protein (REMP) chaperone for YcdX compare
ECD_t00059 -1.2 -1.4 tRNA-Thr compare
ECD_03847 -1.2 -5.7 pyridine nucleotide transhydrogenase, soluble compare
ECD_00496 -1.1 -1.8 DLP12 prophage; putative DNA-binding transcriptional regulator compare
ECD_01879 -1.1 -1.4 response regulator in two-component regulatory system with BarA compare
ECD_01109 -1.1 -2.1 L,D-transpeptidase linking Lpp to murein compare
ECD_03489 -1.1 -5.8 lipopolysaccharide core biosynthesis protein compare
ECD_00682 -1.1 -1.6 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_00001 -1.1 -2.8 thr operon leader peptide compare
ECD_00843 -1.1 -2.5 phage baseplate assembly protein compare
ECD_03106 -1.1 -4.0 ribonuclease G compare
ECD_03046 -1.1 -2.7 transcript cleavage factor compare
ECD_03036 -1.1 -2.6 transcription termination/antitermination L factor compare
ECD_03657 -1.1 -4.4 guanosine pentaphosphatase/exopolyphosphatase compare
ECD_00960 -1.1 -2.2 Ter macrodomain organizer matS-binding protein compare
ECD_04018 -1.0 -1.1 entericidin A membrane lipoprotein, antidote entericidin B compare
ECD_04107 -1.0 -1.3 trehalose-6-P hydrolase compare
ECD_03031 -1.0 -4.1 polynucleotide phosphorylase/polyadenylase compare
ECD_00502 -1.0 -1.5 DLP12 prophage; putative antitermination protein compare
ECD_03659 -1.0 -1.0 thioredoxin 1 compare
ECD_03801 -1.0 -5.0 6-phosphofructokinase I compare
ECD_02470 -1.0 -3.1 ATP-dependent RNA helicase compare
ECD_01964 -1.0 -2.1 putative acyl transferase compare
ECD_02209 -1.0 -2.8 NADH:ubiquinone oxidoreductase, chain F compare
ECD_03241 -1.0 -3.5 3-dehydroquinate synthase compare
ECD_t00083 -0.9 -2.0 tRNA-Leu compare
ECD_02226 -0.9 -2.0 glutathione S-transferase compare
ECD_03486 -0.9 -2.9 UDP-glucose:(Glucosyl) LPS alpha1,3-glucosyltransferase WaaO compare
ECD_01482 -0.9 -1.4 succinate semialdehyde dehydrogenase, NAD(P)+-dependent compare
ECD_03735 -0.9 -3.2 NAD(P)H-flavin reductase compare
ECD_03756 -0.9 -5.3 GTP-binding protein compare
ECD_01575 -0.9 -1.5 dihydromonapterin reductase, NADPH-dependent; dihydrofolate reductase isozyme compare
ECD_01162 -0.9 -1.0 fatty acid metabolism regulon transcriptional regulator compare
ECD_02097 -0.9 -2.5 fructose-1-phosphate kinase compare
ECD_00407 -0.9 -0.7 DUF1428 family protein compare
ECD_01589 -0.9 -1.3 transcriptional repressor of Mal regulon compare
ECD_01931 -0.8 -3.6 6-phosphogluconate dehydrogenase, decarboxylating compare
ECD_01226 -0.8 -2.0 membrane spanning protein in TonB-ExbB-ExbD transport complex compare
ECD_00112 -0.8 -4.7 pyruvate dehydrogenase complex repressor; autorepressor compare
ECD_00818 -0.8 -1.6 hypothetical protein compare
ECD_00018 -0.8 -1.4 sodium-proton antiporter compare
ECD_00399 -0.8 -1.7 putative DNA-binding transcriptional regulator compare
ECD_t00011 -0.8 -1.3 tRNA-Gln compare
ECD_01529 -0.8 -0.8 Qin prophage; uncharacterized protein compare
ECD_02899 -0.8 -1.2 inner membrane protein compare
ECD_02736 -0.8 -1.8 glycine cleavage complex lipoylprotein compare
ECD_00054 -0.8 -1.2 protein associated with Co2+ and Mg2+ efflux compare
ECD_03699 -0.8 -2.5 4HBT thioesterase family protein compare
ECD_02777 -0.8 -3.0 glutathione synthetase compare
ECD_00688 -0.8 -3.2 succinyl-CoA synthetase, NAD(P)-binding, alpha subunit compare
ECD_01779 -0.8 -1.5 putative reactive intermediate deaminase compare
ECD_00501 -0.8 -1.8 uncharacterized protein, DLP12 prophage compare
ECD_02207 -0.8 -1.5 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_00813 -0.8 -1.2 transcriptional regulator of csgD and ybiJI; autoregulator compare
ECD_02539 -0.7 -4.4 transcriptional repressor of microcin B17 synthesis and multidrug efflux compare
ECD_00389 -0.7 -3.0 ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease compare
ECD_00684 -0.7 -2.2 succinate dehydrogenase, FeS subunit compare
ECD_02384 -0.7 -1.8 putative formate transporter compare
ECD_03086 -0.7 -2.1 sialic acid-inducible nan operon repressor compare
ECD_02729 -0.7 -1.9 flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair compare
ECD_01861 -0.7 -2.2 proton conductor component of flagella motor compare
ECD_01915 -0.7 -1.8 putative TusA family sulfurtransferase compare
ECD_02204 -0.7 -0.9 NADH:ubiquinone oxidoreductase, membrane subunit K compare
ECD_01577 -0.7 -0.9 response regulator of RstAB two-component system compare
ECD_01320 -0.7 -1.9 ATP-dependent RNA helicase, specific for 23S rRNA compare
ECD_02984 -0.7 -1.5 L-threonine dehydratase, catabolic compare
ECD_02155 -0.7 -1.7 DUF1175 family protein, putative host defense protein compare
ECD_00136 -0.7 -1.3 putative fimbrial-like adhesin protein compare
ECD_03752 -0.7 -4.3 coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent compare
ECD_00142 -0.7 -2.5 poly(A) polymerase compare
ECD_01826 -0.7 -0.9 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_03350 -0.7 -0.8 arsenical resistance operon transcriptional repressor; autorepressor compare
ECD_03022 -0.7 -2.0 GIY-YIG nuclease superfamily protein compare
ECD_02874 -0.7 -2.3 DUF2623 family protein compare
ECD_02028 -0.7 -1.3 putative kinase compare
ECD_00322 -0.7 -1.0 putative transcriptional regulator compare
ECD_01121 -0.7 -2.3 spermidine/putrescine ABC transporter periplasmic binding protein compare
ECD_01353 -0.7 -1.4 putative membrane-anchored protein, function unknown compare
ECD_00900 -0.7 -1.6 dimethyl sulfoxide reductase, anaerobic, subunit C compare
ECD_03207 -0.7 -1.4 OsmC family protein compare
ECD_01122 -0.7 -1.6 spermidine/putrescine ABC transporter permease compare
ECD_04093 -0.7 -1.5 GGCT-like protein compare
ECD_03342 -0.7 -2.3 phosphate transporter, low-affinity; tellurite importer compare
ECD_02879 -0.7 -2.6 membrane spanning protein in TonB-ExbB-ExbD complex compare
ECD_01103 -0.7 -1.2 beta N-acetyl-glucosaminidase compare
ECD_02091 -0.6 -1.5 ribonucleoside hydrolase 2 compare
ECD_01489 -0.6 -1.3 transcriptional repressor of multiple antibiotic resistance compare
ECD_01478 -0.6 -1.3 altronate oxidoreductase, NAD-dependent compare
ECD_00233 -0.6 -2.4 xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase compare
ECD_01208 -0.6 -1.3 formyltetrahydrofolate hydrolase compare
ECD_02335 -0.6 -1.5 N-acetylmuramoyl-l-alanine amidase I compare
ECD_00930 -0.6 -0.9 M15A protease-related family periplasmic protein compare
ECD_00492 -0.6 -0.8 hypothetical protein compare
ECD_03064 -0.6 -1.1 periplasmic membrane-anchored LPS-binding protein; LPS export protein compare
ECD_00984 -0.6 -2.5 tyrosine-protein kinase, role in O-antigen capsule formation compare
ECD_02284 -0.6 -1.1 formyl-CoA transferase, NAD(P)-binding compare
ECD_01248 -0.6 -1.0 inner membrane protein, S49 peptidase family protein compare
ECD_03274 -0.6 -2.8 DNA-binding transcriptional repressor compare
ECD_02456 -0.6 -1.3 putative 4Fe-4S cluster-containing protein compare
ECD_00585 -0.6 -0.9 citrate lyase, acyl carrier (gamma) subunit compare
ECD_03727 -0.6 -1.1 aerobic ubiquinone synthesis protein, SCP2 family protein compare
ECD_01225 -0.6 -1.1 putative DGPF domain-containing enzyme compare
ECD_00081 -0.6 -2.0 transcriptional repressor-activator for carbon metabolism compare
ECD_00635 -0.6 -1.7 glucosamine-6-phosphate deaminase compare
ECD_03277 -0.6 -2.3 sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding compare
ECD_02989 -0.6 -3.3 glycerate kinase I compare
ECD_02726 -0.6 -1.7 site-specific tyrosine recombinase compare
ECD_01798 -0.6 -2.6 KDG regulon transcriptional repressor compare
ECD_02036 -0.6 -0.8 hypothetical protein compare
ECD_00464 -0.6 -1.9 glycerate kinase II compare
ECD_03089 -0.6 -2.5 stringent starvation protein A, phage P1 late gene activator, RNAP-associated acid-resistance protein, inactive glutathione S-transferase-like protein compare
ECD_00353 -0.6 -1.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
ECD_01907 -0.6 -1.6 hypothetical protein compare
ECD_01305 -0.6 -1.7 S9-like protein non-peptidase family protein compare
ECD_02543 -0.6 -5.0 glutamate-cysteine ligase compare
ECD_r00015 -0.6 -2.6 23S ribosomal RNA compare
ECD_02951 -0.6 -0.9 antitoxinof the HigB-HigA toxin-antitoxin system compare
ECD_02718 -0.6 -1.7 putative 4Fe-4S ferredoxin-type oxidoreductase subunit compare
ECD_02710 -0.6 -1.2 CTP:molybdopterin cytidylyltransferase compare
ECD_01084 -0.6 -1.8 DUF177 family protein compare
ECD_03997 -0.6 -1.5 putative 4Fe-4S mono-cluster protein compare
ECD_00765 -0.6 -0.9 DUF1768 family protein compare
ECD_00165 -0.6 -1.8 uridylyltransferase compare
ECD_00552 -0.6 -1.1 stimulator of EntF adenylation activity, MbtH-like compare
ECD_00196 -0.6 -2.2 DL-methionine transporter subunit compare
ECD_00296 -0.6 -1.2 thiogalactoside acetyltransferase compare
ECD_03469 -0.6 -2.2 putative rhodanese-related sulfurtransferase compare
ECD_00026 -0.6 -1.1 hypothetical protein compare
ECD_03121 -0.6 -0.7 putative membrane protein compare
ECD_04102 -0.6 -1.9 ribosome-associated UPF0307 family protein compare
ECD_00785 -0.6 -2.1 putative transporter compare
ECD_01906 -0.6 -0.7 hypothetical protein compare
ECD_02017 -0.6 -2.1 galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding compare
ECD_03817 -0.6 -1.5 peptidase component of the HslUV protease compare
ECD_03067 -0.6 -0.7 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_00752 -0.6 -1.1 molybdopterin synthase, large subunit compare
ECD_04250 -0.6 -3.6 peptide chain release factor RF-3 compare
ECD_01721 -0.5 -1.2 TVP38/TMEM64 family inner membrane protein compare
ECD_03746 -0.5 -2.0 periplasmic protein disulfide isomerase I compare
ECD_00014 -0.5 -1.2 chaperone Hsp70, with co-chaperone DnaJ compare
ECD_01390 -0.5 -1.3 IS609 transposase B compare
ECD_01746 -0.5 -1.4 DUF1315 family protein compare
ECD_00959 -0.5 -2.4 putative peptidase compare
ECD_01900 -0.5 -1.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ECD_03262 -0.5 -1.0 putative DNA-binding transcriptional regulator compare
ECD_03612 -0.5 -3.1 phosphate ABC transporter periplasmic binding protein compare
ECD_01003 -0.5 -1.2 DnaK co-chaperone; curved DNA-binding protein compare
ECD_02740 -0.5 -2.3 proline aminopeptidase P II compare
ECD_00633 -0.5 -1.5 N-acetylglucosamine-inducible nag divergent operon transcriptional repressor compare
ECD_03096 -0.5 -1.4 malate dehydrogenase, NAD(P)-binding compare
ECD_02132 -0.5 -1.2 ferredoxin-type protein compare
ECD_01960 -0.5 -0.8 putative acyl transferase compare
ECD_02769 -0.5 -1.4 uncharacterized protein compare
ECD_01601 -0.5 -0.7 SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms