Experiment set7S44 for Escherichia coli BL21

Compare to:

Laval1261

200 most important genes:

  gene name fitness t score description  
ECD_03797 -4.6 -3.2 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_01681 -2.7 -2.6 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_03692 -2.5 -6.4 magnesium/nickel/cobalt transporter compare
ECD_04070 -2.0 -2.6 50S ribosomal subunit protein L9 compare
ECD_00781 -2.0 -6.8 outer membrane protein X compare
ECD_03897 -1.9 -3.6 glucosephosphate isomerase compare
ECD_03037 -1.9 -3.1 ribosome maturation factor for 30S subunits compare
ECD_00053 -1.8 -2.9 diadenosine tetraphosphatase compare
ECD_00993 -1.8 -2.3 cold shock gene compare
ECD_00634 -1.8 -2.5 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_01230 -1.7 -2.7 outer membrane protein W compare
ECD_02899 -1.5 -2.0 inner membrane protein compare
ECD_02765 -1.5 -3.5 transketolase 1, thiamine triphosphate-binding compare
ECD_01645 -1.4 -2.2 pyruvate kinase I compare
ECD_03687 -1.3 -1.7 site-specific tyrosine recombinase compare
ECD_02549 -1.3 -5.5 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_00532 -1.3 -1.5 response regulator in two-component regulatory system with CusS compare
ECD_02206 -1.3 -2.2 NADH:ubiquinone oxidoreductase, chain I compare
ECD_01250 -1.3 -1.6 DNA topoisomerase I, omega subunit compare
ECD_01273 -1.2 -1.9 putrescine importer compare
ECD_00380 -1.2 -1.7 cytochrome o ubiquinol oxidase subunit IV compare
ECD_02507 -1.2 -1.0 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_03571 -1.2 -1.3 DUF1375 family outer membrane protein compare
ECD_02840 -1.1 -1.6 secretin (GspDbeta) OM localization lipoprotein pilotin compare
ECD_02951 -1.1 -1.7 antitoxinof the HigB-HigA toxin-antitoxin system compare
ECD_03625 -1.1 -1.9 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_04193 -1.1 -1.5 fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor compare
ECD_02210 -1.1 -2.8 NADH:ubiquinone oxidoreductase, chain E compare
ECD_02285 -1.0 -1.6 uncharacterized protein compare
ECD_01234 -1.0 -1.5 tryptophan synthase, alpha subunit compare
ECD_02091 -1.0 -2.3 ribonucleoside hydrolase 2 compare
ECD_01003 -1.0 -3.2 DnaK co-chaperone; curved DNA-binding protein compare
ECD_00933 -1.0 -2.6 outer membrane porin 1a (Ia compare
ECD_02607 -1.0 -1.3 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent compare
ECD_01775 -1.0 -1.8 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) compare
ECD_03801 -1.0 -5.4 6-phosphofructokinase I compare
ECD_01842 -1.0 -1.3 tRNA (cmo5U34)-carboxymethyltransferase, carboxy-SAM-dependent compare
ECD_02742 -1.0 -3.6 FtsZ stabilizer compare
ECD_03277 -1.0 -3.8 sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding compare
ECD_00969 -1.0 -1.5 putative CoA-binding protein compare
ECD_02726 -1.0 -2.7 site-specific tyrosine recombinase compare
ECD_01621 -1.0 -1.9 glyoxalase I, Ni-dependent compare
ECD_03075 -1.0 -3.1 aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB compare
ECD_02484 -1.0 -4.5 23S rRNA pseudouridine(1911,1915,1917) synthase compare
ECD_03342 -1.0 -3.8 phosphate transporter, low-affinity; tellurite importer compare
ECD_02201 -1.0 -3.5 NADH:ubiquinone oxidoreductase, membrane subunit N compare
ECD_00176 -0.9 -1.2 periplasmic chaperone compare
ECD_00904 -0.9 -1.9 LysR family putative transcriptional regulator compare
ECD_02470 -0.9 -3.1 ATP-dependent RNA helicase compare
ECD_02738 -0.9 -1.4 2-octaprenylphenol hydroxylase, FAD-dependent compare
ECD_00758 -0.9 -2.0 inner membrane protein compare
ECD_01985 -0.9 -1.2 UPF0339 family protein compare
ECD_01969 -0.9 -2.3 inner membrane protein compare
ECD_01221 -0.9 -2.1 oligopeptide ABC transporter ATPase compare
ECD_03798 -0.9 -1.9 response regulator in two-component regulatory system with CpxA compare
ECD_01195 -0.9 -1.2 cation transport regulator compare
ECD_03031 -0.8 -3.8 polynucleotide phosphorylase/polyadenylase compare
ECD_t00019 -0.8 -1.2 tRNA-Lys compare
ECD_00803 -0.8 -1.6 repressor of biofilm formation by indole transport regulation compare
ECD_03242 -0.8 -1.3 shikimate kinase I compare
ECD_00032 -0.8 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) compare
ECD_03817 -0.8 -2.3 peptidase component of the HslUV protease compare
ECD_00246 -0.8 -2.6 DUF1440 family inner membrane acid resistance protein compare
ECD_04093 -0.8 -1.6 GGCT-like protein compare
ECD_03816 -0.8 -2.3 molecular chaperone and ATPase component of HslUV protease compare
ECD_03119 -0.8 -1.2 global DNA-binding transcriptional dual regulator compare
ECD_00818 -0.8 -1.8 hypothetical protein compare
ECD_t00011 -0.8 -1.6 tRNA-Gln compare
ECD_01921 -0.8 -2.3 ATP phosphoribosyltransferase compare
ECD_02209 -0.8 -2.8 NADH:ubiquinone oxidoreductase, chain F compare
ECD_02463 -0.8 -2.3 back-translocating elongation factor EF4, GTPase compare
ECD_01084 -0.8 -2.9 DUF177 family protein compare
ECD_01950 -0.8 -1.1 putative glycosyl transferase compare
ECD_02330 -0.8 -2.4 penicillin binding protein PBP4B; weak DD-carboxypeptidase activity compare
ECD_00774 -0.8 -1.4 23S rRNA m(6)A1618 methyltransferase, SAM-dependent compare
ECD_03257 -0.8 -1.4 response regulator in two-component regulatory system with EnvZ compare
ECD_03256 -0.8 -3.4 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_02203 -0.8 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
ECD_02907 -0.8 -2.9 transport channel compare
ECD_02061 -0.8 -2.2 putative ABC transporter periplasmic binding protein compare
ECD_02777 -0.8 -3.3 glutathione synthetase compare
ECD_01168 -0.8 -1.1 lytic murein endotransglycosylase E compare
ECD_01489 -0.8 -1.5 transcriptional repressor of multiple antibiotic resistance compare
ECD_01931 -0.8 -3.4 6-phosphogluconate dehydrogenase, decarboxylating compare
ECD_02508 -0.7 -1.2 tmRNA-binding trans-translation protein compare
ECD_01820 -0.7 -2.3 phosphoribosylglycinamide formyltransferase 2 compare
ECD_01122 -0.7 -1.6 spermidine/putrescine ABC transporter permease compare
ECD_01812 -0.7 -1.5 CopC family protein compare
ECD_02318 -0.7 -1.1 pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase compare
ECD_01655 -0.7 -1.6 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
ECD_00420 -0.7 -1.2 adenine phosphoribosyltransferase compare
ECD_01906 -0.7 -1.0 hypothetical protein compare
ECD_t00054 -0.7 -2.4 tRNA-Gly compare
ECD_02284 -0.7 -1.3 formyl-CoA transferase, NAD(P)-binding compare
ECD_01434 -0.7 -1.2 formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible compare
ECD_03238 -0.7 -1.8 D-ribulose-5-phosphate 3-epimerase compare
ECD_01040 -0.7 -1.7 curli assembly protein compare
ECD_03657 -0.7 -3.4 guanosine pentaphosphatase/exopolyphosphatase compare
ECD_03756 -0.7 -4.1 GTP-binding protein compare
ECD_03029 -0.7 -3.2 ATP-dependent RNA helicase compare
ECD_02136 -0.7 -1.9 ecotin, a serine protease inhibitor compare
ECD_02150 -0.6 -2.6 short chain fatty acid transporter compare
ECD_03489 -0.6 -3.9 lipopolysaccharide core biosynthesis protein compare
ECD_03735 -0.6 -2.9 NAD(P)H-flavin reductase compare
ECD_01793 -0.6 -2.1 stress protein, member of the CspA-family compare
ECD_00387 -0.6 -3.4 peptidyl-prolyl cis/trans isomerase (trigger factor) compare
ECD_02584 -0.6 -1.2 serine/threonine-specific protein phosphatase 2 compare
ECD_01109 -0.6 -1.4 L,D-transpeptidase linking Lpp to murein compare
ECD_00836 -0.6 -0.9 putative Regulatory protein compare
ECD_01814 -0.6 -1.0 C-N hydrolase family protein compare
ECD_03040 -0.6 -1.0 preprotein translocase membrane subunit compare
ECD_03610 -0.6 -2.1 phosphate ABC transporter permease compare
ECD_01160 -0.6 -2.0 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I compare
ECD_00481 -0.6 -1.2 putative periplasmic pilus chaperone compare
ECD_03067 -0.6 -1.0 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_00185 -0.6 -2.0 putative lyase compare
ECD_02348 -0.6 -1.4 ethanolamine utilization protein, putative carboxysome structural protein compare
ECD_00015 -0.6 -2.9 chaperone Hsp40, DnaK co-chaperone compare
ECD_02476 -0.6 -1.6 thioredoxin 2 compare
ECD_00633 -0.6 -1.9 N-acetylglucosamine-inducible nag divergent operon transcriptional repressor compare
ECD_00142 -0.6 -2.4 poly(A) polymerase compare
ECD_03352 -0.6 -2.3 arsenate reductase compare
ECD_02365 -0.6 -1.3 palmitoyl-CoA esterase activity, uncertain physiological substrate compare
ECD_00098 -0.6 -1.3 regulator of secA translation compare
ECD_01577 -0.6 -1.0 response regulator of RstAB two-component system compare
ECD_00374 -0.6 -0.9 phage Phi6 host factor, ATP/GTP binding protein compare
ECD_01556 -0.6 -1.4 putative selenate reductase, periplasmic compare
ECD_01700 -0.6 -1.2 cell division modulator compare
ECD_03036 -0.6 -1.7 transcription termination/antitermination L factor compare
ECD_03876 -0.6 -3.5 DUF416 domain protein conserved
ECD_04038 -0.6 -0.6 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_03093 -0.6 -1.3 DUF1043 family inner membrane-anchored protein compare
ECD_00653 -0.6 -1.7 potassium translocating ATPase, subunit C compare
ECD_00275 -0.6 -2.6 DUF2877 family protein compare
ECD_02220 -0.6 -1.0 UPF0208 family inner membrane protein compare
ECD_03139 -0.6 -2.9 16S rRNA m(5)C967 methyltransferase, SAM-dependent compare
ECD_03266 -0.6 -2.6 Fe/S biogenesis protein, putative scaffold/chaperone protein compare
ECD_t00077 -0.6 -0.6 tRNA-Thr compare
ECD_01263 -0.6 -2.3 ribonuclease II compare
ECD_01557 -0.6 -1.8 S- and N-oxide reductase, A subunit, periplasmic compare
ECD_03506 -0.6 -1.0 RNA polymerase, omega subunit compare
ECD_02212 -0.6 -2.2 NADH:ubiquinone oxidoreductase, chain B compare
ECD_00500 -0.5 -1.3 DLP12 prophage; endonuclease RUS compare
ECD_01747 -0.5 -1.0 methionine sulfoxide reductase B compare
ECD_02280 -0.5 -1.3 hybrid sensory histidine kinase in two-component regulatory system with EvgA compare
ECD_02397 -0.5 -1.5 outer membrane integrity lipoprotein compare
ECD_01692 -0.5 -1.6 6-phosphofructokinase II compare
ECD_00925 -0.5 -1.0 putative S-adenosyl-L-methionine-dependent methyltransferase compare
ECD_01096 -0.5 -1.8 putative DNase compare
ECD_03458 -0.5 -1.9 ribosome-associated DUF2810 family protein compare
ECD_00960 -0.5 -1.4 Ter macrodomain organizer matS-binding protein compare
ECD_04049 -0.5 -1.0 PspA/IM30 family protein compare
ECD_04041 -0.5 -1.4 modulator for HflB protease specific for phage lambda cII repressor compare
ECD_00165 -0.5 -1.9 uridylyltransferase compare
ECD_01923 -0.5 -2.4 histidinol-phosphate aminotransferase compare
ECD_00706 -0.5 -1.4 putative periplasmic protein compare
ECD_00594 -0.5 -1.2 fluoride efflux channel, dual topology membrane protein compare
ECD_03642 -0.5 -3.6 flhDC operon transcriptional repressor compare
ECD_01366 -0.5 -1.8 putative phosphatase inner membrane protein compare
ECD_02915 -0.5 -1.5 putative fimbrial-like adhesin protein compare
ECD_00480 -0.5 -1.5 FimA-like protein compare
ECD_01011 -0.5 -1.0 putative malonic semialdehyde reductase compare
ECD_01977 -0.5 -1.3 ser/thr phosphatase-related protein compare
ECD_04250 -0.5 -3.4 peptide chain release factor RF-3 compare
ECD_01954 -0.5 -0.7 phosphomannomutase compare
ECD_00423 -0.5 -1.8 gap repair protein compare
ECD_00901 -0.5 -1.4 putative isochorismatase family hydrolase compare
ECD_01061 -0.5 -1.3 multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin compare
ECD_02208 -0.5 -2.4 NADH:ubiquinone oxidoreductase, chain G compare
ECD_00552 -0.5 -1.2 stimulator of EntF adenylation activity, MbtH-like compare
ECD_02211 -0.5 -1.8 NADH:ubiquinone oxidoreductase, fused CD subunit compare
ECD_02459 -0.5 -1.1 gap repair protein compare
ECD_01857 -0.5 -1.1 methyl-accepting chemotaxis protein II compare
ECD_02692 -0.5 -1.6 short chain acyltransferase compare
ECD_00834 -0.5 -0.9 putative capsid scaffolding protein compare
ECD_00081 -0.5 -1.9 transcriptional repressor-activator for carbon metabolism compare
ECD_00276 -0.5 -2.1 putative NAD(P)-binding succinyl-CoA synthase compare
ECD_01352 -0.5 -1.1 fermentative D-lactate dehydrogenase, NAD-dependent compare
ECD_01792 -0.5 -1.3 23S rRNA m(1)G745 methyltransferase, SAM-dependent compare
ECD_01007 -0.5 -2.1 NAD(P)H:quinone oxidoreductase compare
ECD_03541 -0.5 -0.8 hypothetical protein compare
ECD_03425 -0.5 -1.1 putative hydrogenase, 4Fe-4S ferredoxin-type component compare
ECD_03509 -0.5 -1.7 ATP-dependent DNA helicase compare
ECD_02396 -0.5 -1.4 uncharacterized protein compare
ECD_01904 -0.5 -2.0 IS2 transposase TnpB compare
ECD_02032 -0.5 -1.6 hydoxyethylthiazole kinase compare
ECD_01625 -0.5 -1.5 murein DD-endopeptidase, space-maker hydrolase compare
ECD_01825 -0.5 -1.5 pyruvate kinase II compare
ECD_00054 -0.5 -1.0 protein associated with Co2+ and Mg2+ efflux compare
ECD_03769 -0.5 -2.9 putative transcriptional regulator for sulfoquinovose utilization compare
ECD_02771 -0.5 -1.7 putative inner membrane protein compare
ECD_03583 -0.5 -3.1 gap repair protein compare
ECD_01960 -0.4 -1.2 putative acyl transferase compare
ECD_00569 -0.4 -1.6 Spo0J family protein, ParB-like nuclease domain compare
ECD_03211 -0.4 -2.1 aminodeoxychorismate synthase, subunit II compare
ECD_01802 -0.4 -1.9 RNA chaperone, putative ProP translation regulator compare
ECD_03590 -0.4 -0.6 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_03349 -0.4 -2.3 glutathione oxidoreductase compare
ECD_00946 -0.4 -1.1 putative fimbriae protein compare
ECD_03929 -0.4 -1.6 DUF419 family protein compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms