Experiment set7S32 for Escherichia coli BL21

Compare to:

Laval1259

200 most important genes:

  gene name fitness t score description  
ECD_01681 -4.4 -3.0 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_t00083 -4.2 -2.5 tRNA-Leu compare
ECD_00142 -3.5 -5.7 poly(A) polymerase compare
ECD_00392 -3.3 -7.9 HU, DNA-binding transcriptional regulator, beta subunit compare
ECD_02423 -3.3 -4.9 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor compare
ECD_02302 -3.0 -6.9 nucleoside (except guanosine) transporter compare
ECD_01629 -3.0 -2.6 transcriptional repressor, hypoxanthine-binding compare
ECD_03660 -3.0 -1.9 rho operon leader peptide compare
ECD_01774 -2.9 -2.5 ribonuclease D compare
ECD_00061 -2.8 -12.8 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase compare
ECD_02470 -2.8 -5.2 ATP-dependent RNA helicase compare
ECD_03031 -2.7 -6.6 polynucleotide phosphorylase/polyadenylase compare
ECD_00053 -2.6 -2.5 diadenosine tetraphosphatase compare
ECD_03257 -2.5 -2.4 response regulator in two-component regulatory system with EnvZ compare
ECD_01006 -2.3 -2.8 uncharacterized protein compare
ECD_04260 -2.3 -6.1 purine nucleoside phosphorylase 1; nicotinamide 1-beta-D-riboside phosphorylase compare
ECD_01084 -2.3 -6.0 DUF177 family protein compare
ECD_03877 -2.1 -4.6 HU, DNA-binding transcriptional regulator, alpha subunit compare
ECD_03817 -2.1 -3.5 peptidase component of the HslUV protease compare
ECD_04038 -2.0 -1.4 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_01058 -2.0 -2.9 dihydro-orotase compare
ECD_03238 -2.0 -3.5 D-ribulose-5-phosphate 3-epimerase compare
ECD_03687 -2.0 -1.7 site-specific tyrosine recombinase compare
ECD_03624 -2.0 -9.8 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein compare
ECD_01695 -2.0 -1.7 putative inner membrane protein compare
ECD_01793 -1.9 -4.2 stress protein, member of the CspA-family compare
ECD_00342 -1.9 -4.8 nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function compare
ECD_00081 -1.8 -4.5 transcriptional repressor-activator for carbon metabolism compare
ECD_02393 -1.8 -4.1 polyphosphate kinase, component of RNA degradosome compare
ECD_00176 -1.8 -1.3 periplasmic chaperone compare
ECD_02459 -1.7 -2.9 gap repair protein compare
ECD_t00019 -1.7 -1.4 tRNA-Lys compare
ECD_01011 -1.7 -1.9 putative malonic semialdehyde reductase compare
ECD_00532 -1.6 -2.4 response regulator in two-component regulatory system with CusS compare
ECD_00420 -1.6 -1.4 adenine phosphoribosyltransferase compare
ECD_r00015 -1.6 -4.9 23S ribosomal RNA compare
ECD_03016 -1.6 -4.3 DnaA initiator-associating factor for replication initiation compare
ECD_04121 -1.6 -2.8 protein inhibitor of RNase E compare
ECD_03695 -1.6 -1.3 Magnesium and cobalt transport protein corA compare
ECD_03501 -1.6 -7.8 UPF0701 family protein compare
ECD_03506 -1.6 -2.3 RNA polymerase, omega subunit compare
ECD_01039 -1.5 -1.6 curlin subunit, amyloid curli fibers, cryptic compare
ECD_04107 -1.5 -1.0 trehalose-6-P hydrolase compare
ECD_00765 -1.5 -1.8 DUF1768 family protein compare
ECD_03590 -1.5 -1.0 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_03731 -1.5 -3.1 TatABCE protein translocation system subunit compare
ECD_02507 -1.5 -1.0 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_03818 -1.5 -1.9 essential cell division protein compare
ECD_04259 -1.5 -3.1 phosphopentomutase compare
ECD_01577 -1.5 -1.8 response regulator of RstAB two-component system compare
ECD_03625 -1.4 -1.0 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_03816 -1.4 -2.8 molecular chaperone and ATPase component of HslUV protease compare
ECD_03256 -1.4 -5.0 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_01121 -1.4 -5.1 spermidine/putrescine ABC transporter periplasmic binding protein compare
ECD_03801 -1.4 -6.1 6-phosphofructokinase I compare
ECD_03509 -1.4 -4.9 ATP-dependent DNA helicase compare
ECD_01122 -1.4 -1.9 spermidine/putrescine ABC transporter permease compare
ECD_01645 -1.4 -2.2 pyruvate kinase I compare
ECD_03729 -1.4 -1.8 TatABCE protein translocation system subunit compare
ECD_03848 -1.3 -5.3 transcriptional repressor of fabA and fabB compare
ECD_04051 -1.3 -1.9 UPF0719 family inner membrane protein compare
ECD_01794 -1.3 -5.7 DUF2527 family heat-induced protein compare
ECD_00434 -1.3 -1.4 putative DNA-binding transcriptional regulator compare
ECD_03029 -1.3 -2.8 ATP-dependent RNA helicase compare
ECD_02432 -1.3 -1.1 3-phenylpropionate dioxygenase, ferredoxin subunit compare
ECD_04039 -1.2 -2.2 global sRNA chaperone; HF-I, host factor for RNA phage Q beta replication compare
ECD_00407 -1.2 -1.5 DUF1428 family protein compare
ECD_00993 -1.2 -1.4 cold shock gene compare
ECD_00930 -1.2 -1.9 M15A protease-related family periplasmic protein compare
ECD_01889 -1.2 -2.6 cytochrome b561-like protein compare
ECD_02111 -1.2 -3.5 uncharacterized protein compare
ECD_02116 -1.1 -3.9 spermidine nucleoid-associated protein compare
ECD_02335 -1.1 -3.5 N-acetylmuramoyl-l-alanine amidase I compare
ECD_01195 -1.1 -1.1 cation transport regulator compare
ECD_00982 -1.1 -2.7 cytochrome bd-II oxidase, subunit II compare
ECD_02280 -1.1 -1.9 hybrid sensory histidine kinase in two-component regulatory system with EvgA compare
ECD_04388 -1.1 -1.9 putative membrane-bound BasS regulator compare
ECD_03350 -1.1 -1.0 arsenical resistance operon transcriptional repressor; autorepressor compare
ECD_02996 -1.1 -4.0 transcriptional repressor of the aga regulon compare
ECD_01081 -1.1 -2.1 uncharacterized protein compare
ECD_02177 -1.1 -1.6 nucleoside triphosphatase compare
ECD_04250 -1.1 -5.6 peptide chain release factor RF-3 compare
ECD_03876 -1.0 -5.2 DUF416 domain protein conserved
ECD_00001 -1.0 -2.1 thr operon leader peptide compare
ECD_00354 -1.0 -3.1 tRNA-guanine transglycosylase compare
ECD_03500 -1.0 -3.5 ribonuclease PH compare
ECD_02244 -1.0 -2.4 putative semialdehyde dehydrogenase compare
ECD_00626 -1.0 -2.5 putative ion transport compare
ECD_02661 -1.0 -3.5 cysteine sulfinate desulfinase compare
ECD_01261 -1.0 -3.1 global regulator of transcription; DeoR family compare
ECD_03983 -1.0 -6.1 sensory histidine kinase in two-component regulatory system with BasR compare
ECD_02409 -1.0 -5.2 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent compare
ECD_03134 -1.0 -4.5 ssDNA-binding protein, function unknown compare
ECD_02951 -1.0 -1.3 antitoxinof the HigB-HigA toxin-antitoxin system compare
ECD_02529 -1.0 -2.0 hydrogen donor for NrdEF electron transport system; glutaredoxin-like protein compare
ECD_01434 -1.0 -1.7 formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible compare
ECD_01230 -1.0 -1.7 outer membrane protein W compare
ECD_01589 -0.9 -1.7 transcriptional repressor of Mal regulon compare
ECD_02694 -0.9 -1.0 putative LuxR family transcriptional regulator compare
ECD_02105 -0.9 -6.1 murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase compare
ECD_01061 -0.9 -2.1 multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin compare
ECD_00950 -0.9 -1.2 FtsZ stabilizer compare
ECD_03659 -0.9 -0.9 thioredoxin 1 compare
ECD_01950 -0.9 -1.2 putative glycosyl transferase compare
ECD_00292 -0.9 -3.1 transcriptional activator of cyn operon; autorepressor compare
ECD_00006 -0.9 -2.3 peroxide resistance protein, lowers intracellular iron compare
ECD_02162 -0.9 -1.1 ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance compare
ECD_00206 -0.9 -5.0 putative S-adenosyl-L-methionine-dependent methyltransferase compare
ECD_03037 -0.9 -1.8 ribosome maturation factor for 30S subunits compare
ECD_00405 -0.9 -2.1 outer membrane lipoprotein compare
ECD_02396 -0.9 -2.5 uncharacterized protein compare
ECD_03612 -0.9 -4.7 phosphate ABC transporter periplasmic binding protein compare
ECD_02549 -0.9 -4.3 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_03571 -0.9 -0.8 DUF1375 family outer membrane protein compare
ECD_10005 -0.8 -1.2 Excisionase compare
ECD_02132 -0.8 -1.1 ferredoxin-type protein compare
ECD_t00008 -0.8 -2.0 tRNA-Gln compare
ECD_00744 -0.8 -1.9 malonyl-ACP O-methyltransferase, SAM-dependent compare
ECD_00417 -0.8 -2.1 DUF2496 family protein compare
ECD_02889 -0.8 -2.6 septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) compare
ECD_01827 -0.8 -2.6 murein DD-endopeptidase, space-maker hydrolase, septation protein compare
ECD_00071 -0.8 -3.9 transcriptional DNA-binding transcriptional activator of sgrS sRNA compare
ECD_03040 -0.8 -0.7 preprotein translocase membrane subunit compare
ECD_00836 -0.8 -0.8 putative Regulatory protein compare
ECD_01875 -0.8 -4.7 tyrosine transporter compare
ECD_00480 -0.8 -1.7 FimA-like protein compare
ECD_01802 -0.8 -3.4 RNA chaperone, putative ProP translation regulator compare
ECD_02036 -0.8 -0.9 hypothetical protein compare
ECD_01263 -0.8 -2.7 ribonuclease II compare
ECD_03436 -0.8 -2.6 putative regulatory protein compare
ECD_02091 -0.8 -1.9 ribonucleoside hydrolase 2 compare
ECD_02710 -0.8 -1.4 CTP:molybdopterin cytidylyltransferase compare
ECD_04265 -0.8 -3.6 DNA repair protein compare
ECD_t00011 -0.8 -1.2 tRNA-Gln compare
ECD_00552 -0.8 -1.5 stimulator of EntF adenylation activity, MbtH-like compare
ECD_01575 -0.8 -1.5 dihydromonapterin reductase, NADPH-dependent; dihydrofolate reductase isozyme compare
ECD_01049 -0.8 -2.2 putative drug efflux system protein compare
ECD_00423 -0.8 -2.2 gap repair protein compare
ECD_01696 -0.7 -1.3 2-deoxyglucose-6-P phosphatase compare
ECD_00481 -0.7 -1.5 putative periplasmic pilus chaperone compare
ECD_04123 -0.7 -1.2 DUF898 family inner membrane protein compare
ECD_00496 -0.7 -1.2 DLP12 prophage; putative DNA-binding transcriptional regulator compare
ECD_02524 -0.7 -2.5 DUF2892 family inner membrane rhodanese compare
ECD_04134 -0.7 -2.0 D-gluconate kinase, thermosensitive compare
ECD_00831 -0.7 -1.7 retron EC86 RNA-directed DNA polymerase-like protein compare
ECD_02268 -0.7 -4.1 long-chain fatty acid outer membrane transporter conserved
ECD_03984 -0.7 -4.0 response regulator in two-component regulatory system with BasS compare
ECD_02018 -0.7 -3.0 galactitol-specific enzyme IIC component of PTS compare
ECD_03730 -0.7 -2.1 TatABCE protein translocation system subunit compare
ECD_00873 -0.7 -2.5 putative NAD(P)H-dependent oxidoreductase compare
ECD_00269 -0.7 -1.3 choline-inducible betIBA-betT divergent operon transcriptional repressor compare
ECD_02747 -0.7 -2.0 transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor compare
ECD_00940 -0.7 -1.3 aliphatic sulfonate ABC transporter periplasmic binding protein compare
ECD_02278 -0.7 -1.4 multidrug resistance efflux pump membrane fusion protein compare
ECD_00054 -0.7 -1.3 protein associated with Co2+ and Mg2+ efflux compare
ECD_03249 -0.7 -2.0 adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP-ribose/NADH hydrolase compare
ECD_03583 -0.7 -4.1 gap repair protein compare
ECD_04248 -0.7 -2.1 ribosomal-protein-S18-alanine N-acetyltransferase compare
ECD_00706 -0.7 -1.6 putative periplasmic protein compare
ECD_04203 -0.7 -2.4 putative ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase compare
ECD_t00054 -0.7 -1.7 tRNA-Gly compare
ECD_01736 -0.7 -1.6 cytoplasmic L-asparaginase 1 compare
ECD_00018 -0.7 -1.5 sodium-proton antiporter compare
ECD_03022 -0.7 -1.6 GIY-YIG nuclease superfamily protein compare
ECD_01218 -0.7 -2.0 oligopeptide ABC transporter permease compare
ECD_03245 -0.7 -2.5 DNA catabolic protein compare
ECD_01479 -0.7 -1.2 putative membrane-bound diguanylate cyclase compare
ECD_01559 -0.7 -1.3 oxidoreductase, membrane subunit compare
ECD_02324 -0.7 -1.7 sulfate/thiosulfate ABC transporter permease compare
ECD_00247 -0.7 -1.7 UPF0153 cysteine cluster protein compare
ECD_01444 -0.7 -0.8 D,D-dipeptide ABC transporter permease compare
ECD_01405 -0.7 -1.2 methionine N-acyltransferase; L-amino acid N-acyltransferase compare
ECD_02852 -0.6 -2.8 hypothetical protein compare
ECD_02424 -0.6 -2.1 tRNA mC32,mU32 2'-O-methyltransferase, SAM-dependent compare
ECD_01625 -0.6 -1.2 murein DD-endopeptidase, space-maker hydrolase compare
ECD_00872 -0.6 -1.4 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; OM lipoprotein compare
ECD_03847 -0.6 -2.7 pyridine nucleotide transhydrogenase, soluble compare
ECD_01792 -0.6 -0.9 23S rRNA m(1)G745 methyltransferase, SAM-dependent compare
ECD_01300 -0.6 -2.0 aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase compare
ECD_01773 -0.6 -1.0 putative YeaWX dioxygenase beta subunit, reductase component compare
ECD_01706 -0.6 -1.0 N,N'-diacetylchitobiose-specific enzyme IIC component of PTS compare
ECD_01235 -0.6 -1.8 tryptophan synthase, beta subunit compare
ECD_01861 -0.6 -2.0 proton conductor component of flagella motor compare
ECD_02618 -0.6 -1.5 putative SDR family oxidoreductase compare
ECD_02097 -0.6 -1.5 fructose-1-phosphate kinase compare
ECD_01849 -0.6 -1.3 proton seal during flagellar secretion compare
ECD_04246 -0.6 -3.3 16S rRNA m(2)G1207 methyltransferase, SAM-dependent compare
ECD_01721 -0.6 -1.3 TVP38/TMEM64 family inner membrane protein compare
ECD_02387 -0.6 -1.3 putative oxidoreductase compare
ECD_04041 -0.6 -1.5 modulator for HflB protease specific for phage lambda cII repressor compare
ECD_01321 -0.6 -2.1 tRNA s(2)C32 thioltransferase, iron sulfur cluster protein compare
ECD_04172 -0.6 -2.2 putative methyltransferase compare
ECD_02288 -0.6 -1.6 palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_03339 -0.6 -2.1 hypothetical protein compare
ECD_02433 -0.6 -2.2 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase compare
ECD_03199 -0.6 -1.1 phi X174 lysis protein compare
ECD_01093 -0.6 -2.6 septation protein, ampicillin sensitivity compare
ECD_02348 -0.6 -1.3 ethanolamine utilization protein, putative carboxysome structural protein compare
ECD_02039 -0.6 -0.6 hypothetical protein compare
ECD_03642 -0.6 -4.0 flhDC operon transcriptional repressor compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms