Experiment set7S204 for Erwinia tracheiphila SCR3

Compare to:

MelonXylem

200 most important genes:

  gene name fitness t score description  
LU632_RS15245 purE -4.5 -5.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS21940 -4.2 -4.9 glycosyltransferase compare
LU632_RS07865 purF -4.1 -19.3 amidophosphoribosyltransferase compare
LU632_RS08275 purM -4.0 -8.1 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS17975 purL -3.9 -18.3 phosphoribosylformylglycinamidine synthase compare
LU632_RS16480 -3.8 -5.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS08335 -3.6 -3.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS21875 gpsA -3.6 -13.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS12500 pyrF -3.4 -8.9 orotidine-5'-phosphate decarboxylase compare
LU632_RS01015 purD -3.4 -9.0 phosphoribosylamine--glycine ligase compare
LU632_RS15250 purK -3.3 -4.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS01020 purH -3.3 -3.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS20950 pyrB -3.3 -11.2 aspartate carbamoyltransferase compare
LU632_RS12925 rssB -3.2 -2.2 two-component system response regulator RssB compare
LU632_RS02750 carB -3.2 -15.6 carbamoyl-phosphate synthase large subunit compare
LU632_RS09955 pyrD -3.1 -12.0 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS02755 carA -3.0 -10.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS22015 pyrE -3.0 -6.5 orotate phosphoribosyltransferase compare
LU632_RS10340 pyrC -2.9 -10.8 dihydroorotase compare
LU632_RS02050 miaA -2.9 -2.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS08010 nuoK -2.8 -5.9 NADH-quinone oxidoreductase subunit NuoK compare
LU632_RS16090 odhB -2.8 -1.9 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS21755 -2.8 -15.7 adenylosuccinate synthase compare
LU632_RS24155 -2.7 -3.1 class I adenylate cyclase compare
LU632_RS07965 -2.6 -6.7 NADH-quinone oxidoreductase subunit A compare
LU632_RS06615 ptsI -2.6 -13.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS16115 sdhC -2.6 -7.9 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS10785 tagH -2.6 -7.4 type VI secretion system-associated FHA domain protein TagH compare
LU632_RS08830 galE -2.6 -16.5 UDP-glucose 4-epimerase GalE compare
LU632_RS10790 tagF -2.6 -4.5 type VI secretion system-associated protein TagF compare
LU632_RS08005 nuoJ -2.6 -7.8 NADH-quinone oxidoreductase subunit J compare
LU632_RS14835 plsX -2.5 -7.0 phosphate acyltransferase PlsX compare
LU632_RS07990 nuoG -2.5 -10.7 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS16120 -2.5 -17.2 citrate synthase compare
LU632_RS06635 zipA -2.4 -4.5 cell division protein ZipA compare
LU632_RS21880 secB -2.4 -4.7 protein-export chaperone SecB compare
LU632_RS09475 mntR -2.4 -6.8 manganese-binding transcriptional regulator MntR compare
LU632_RS16105 sdhA -2.4 -10.6 succinate dehydrogenase flavoprotein subunit compare
LU632_RS07995 nuoH -2.4 -7.2 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS07190 -2.4 -5.5 tRNA-Arg compare
LU632_RS08015 nuoL -2.4 -12.4 NADH-quinone oxidoreductase subunit L compare
LU632_RS12910 -2.3 -1.6 NAD-dependent epimerase compare
LU632_RS07975 nuoC -2.3 -13.9 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS16110 sdhD -2.3 -7.6 succinate dehydrogenase membrane anchor subunit compare
LU632_RS26015 -2.3 -9.3 hypothetical protein compare
LU632_RS05855 serA -2.3 -10.9 phosphoglycerate dehydrogenase compare
LU632_RS02070 hflC -2.2 -3.9 protease modulator HflC compare
LU632_RS08025 nuoN -2.2 -8.3 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS07985 nuoF -2.2 -9.3 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS21365 mdh -2.2 -8.9 malate dehydrogenase compare
LU632_RS06610 crr -2.1 -3.4 PTS glucose transporter subunit IIA compare
LU632_RS07970 -2.1 -10.9 NADH-quinone oxidoreductase subunit B compare
LU632_RS08020 nuoM -2.0 -8.2 NADH-quinone oxidoreductase subunit M compare
LU632_RS07775 aroC -2.0 -4.5 chorismate synthase compare
LU632_RS02065 hflK -2.0 -3.7 FtsH protease activity modulator HflK compare
LU632_RS14845 yceD -2.0 -1.9 23S rRNA accumulation protein YceD compare
LU632_RS22150 typA -1.9 -3.3 ribosome-dependent GTPase TypA compare
LU632_RS08000 nuoI -1.9 -5.3 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS17830 -1.9 -1.6 MgtC/SapB family protein compare
LU632_RS18100 htpG -1.9 -5.5 molecular chaperone HtpG compare
LU632_RS22365 pgi -1.8 -8.8 glucose-6-phosphate isomerase compare
LU632_RS13085 dsbB -1.8 -2.0 disulfide bond formation protein DsbB compare
LU632_RS22930 pckA -1.8 -9.4 phosphoenolpyruvate carboxykinase (ATP) compare
LU632_RS08850 rfbB -1.8 -2.6 dTDP-glucose 4,6-dehydratase compare
LU632_RS02545 serB -1.8 -2.0 phosphoserine phosphatase compare
LU632_RS17320 fruK -1.7 -4.5 1-phosphofructokinase compare
LU632_RS06335 -1.7 -7.9 glycerate kinase compare
LU632_RS02730 rsmA -1.7 -2.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LU632_RS00330 -1.7 -9.1 dicarboxylate/amino acid:cation symporter compare
LU632_RS01190 proA -1.7 -7.9 glutamate-5-semialdehyde dehydrogenase compare
LU632_RS02900 cra -1.6 -8.5 catabolite repressor/activator compare
LU632_RS22710 -1.6 -5.3 transcriptional regulator compare
LU632_RS08885 -1.6 -4.5 ABC transporter ATP-binding protein compare
LU632_RS12850 cls -1.6 -2.2 cardiolipin synthase compare
LU632_RS17325 fruB -1.6 -8.4 fused PTS fructose transporter subunit IIA/HPr protein compare
LU632_RS10270 -1.6 -1.7 glucan biosynthesis protein G compare
LU632_RS05460 -1.6 -3.6 YggS family pyridoxal phosphate-dependent enzyme compare
LU632_RS16095 sucA -1.5 -1.0 2-oxoglutarate dehydrogenase E1 component compare
LU632_RS26010 -1.5 -7.9 head-tail adaptor compare
LU632_RS08815 -1.5 -3.7 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS10275 mdoH -1.4 -2.4 glucans biosynthesis glucosyltransferase MdoH compare
LU632_RS09745 -1.4 -2.1 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS16100 -1.4 -3.3 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS23875 dsbA -1.4 -1.2 thiol:disulfide interchange protein DsbA compare
LU632_RS21930 -1.4 -7.5 glycosyltransferase compare
LU632_RS16475 arnT -1.4 -9.6 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
LU632_RS06410 -1.4 -2.0 phosphoadenylyl-sulfate reductase compare
LU632_RS21445 mreC -1.4 -2.7 rod shape-determining protein MreC compare
LU632_RS09730 trxB -1.4 -2.7 thioredoxin-disulfide reductase compare
LU632_RS08260 ppk1 -1.4 -6.9 polyphosphate kinase 1 compare
LU632_RS26050 -1.4 -11.0 DUF1073 domain-containing protein compare
LU632_RS11245 slyB -1.3 -3.0 outer membrane lipoprotein SlyB compare
LU632_RS18995 proC -1.3 -2.5 pyrroline-5-carboxylate reductase compare
LU632_RS17785 bamB -1.3 -4.5 outer membrane protein assembly factor BamB compare
LU632_RS15640 -1.3 -2.2 helix-turn-helix domain-containing protein compare
LU632_RS08880 -1.3 -2.6 ABC transporter permease compare
LU632_RS14860 rne -1.3 -1.9 ribonuclease E compare
LU632_RS13460 cmoB -1.3 -5.0 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
LU632_RS05320 -1.3 -1.5 hypothetical protein compare
LU632_RS18005 -1.3 -5.3 O-antigen ligase family protein compare
LU632_RS23980 tatC -1.3 -5.7 Sec-independent protein translocase subunit TatC compare
LU632_RS04740 -1.3 -1.9 DNA topoisomerase IV subunit B compare
LU632_RS05410 mltC -1.3 -7.8 membrane-bound lytic murein transglycosylase MltC compare
LU632_RS25725 -1.2 -1.8 ParA family protein compare
LU632_RS15425 rpoE -1.2 -9.2 RNA polymerase sigma factor RpoE compare
LU632_RS01185 proB -1.2 -5.8 glutamate 5-kinase compare
LU632_RS20000 degP -1.2 -4.5 serine endoprotease DegP compare
LU632_RS06675 cysM -1.2 -1.1 cysteine synthase CysM compare
LU632_RS17615 -1.2 -3.3 YejL family protein compare
LU632_RS05475 -1.2 -3.8 YqgE/AlgH family protein compare
LU632_RS19930 rseP -1.2 -6.0 sigma E protease regulator RseP compare
LU632_RS26030 -1.2 -8.0 DUF2184 domain-containing protein compare
LU632_RS21710 rplI -1.2 -2.0 50S ribosomal protein L9 compare
LU632_RS26035 -1.2 -8.3 hypothetical protein compare
LU632_RS12905 hns -1.2 -1.2 DNA-binding transcriptional regulator H-NS compare
LU632_RS09635 -1.1 -2.8 YbjN domain-containing protein compare
LU632_RS15385 rnc -1.1 -1.9 ribonuclease III compare
LU632_RS24170 hemX -1.1 -5.0 uroporphyrinogen-III C-methyltransferase compare
LU632_RS16495 arnB -1.1 -7.3 UDP-4-amino-4-deoxy-L-arabinose aminotransferase compare
LU632_RS08855 rfbD -1.1 -6.4 dTDP-4-dehydrorhamnose reductase compare
LU632_RS08865 rfbC -1.1 -5.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
LU632_RS24105 -1.1 -1.6 thioesterase family protein compare
LU632_RS13455 cmoA -1.1 -2.7 carboxy-S-adenosyl-L-methionine synthase CmoA compare
LU632_RS10170 -1.1 -1.7 autoinducer binding domain-containing protein compare
LU632_RS02110 -1.1 -8.4 translocation/assembly module TamB compare
LU632_RS09245 -1.1 -4.1 L,D-transpeptidase family protein compare
LU632_RS08750 asmA -1.1 -7.0 outer membrane assembly protein AsmA compare
LU632_RS02140 -1.1 -2.8 ribosome-associated protein compare
LU632_RS09795 aroA -1.1 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS00070 -1.1 -2.8 hypothetical protein compare
LU632_RS07045 -1.0 -1.5 hypothetical protein compare
LU632_RS08820 -1.0 -5.9 lipopolysaccharide biosynthesis protein compare
LU632_RS24250 wecA -1.0 -7.4 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
LU632_RS13370 pyk -1.0 -7.2 pyruvate kinase compare
LU632_RS02105 -1.0 -7.6 autotransporter assembly complex protein TamA compare
LU632_RS18350 tig -1.0 -4.3 trigger factor compare
LU632_RS19580 fabR -1.0 -1.6 HTH-type transcriptional repressor FabR compare
LU632_RS12575 -1.0 -1.7 hypothetical protein compare
LU632_RS21955 -1.0 -1.0 glycosyltransferase family 4 protein compare
LU632_RS06985 -1.0 -1.2 hypothetical protein compare
LU632_RS21085 secG -1.0 -2.2 preprotein translocase subunit SecG compare
LU632_RS12940 purU -0.9 -7.1 formyltetrahydrofolate deformylase compare
LU632_RS04180 -0.9 -1.8 hypothetical protein compare
LU632_RS08035 -0.9 -5.4 glucan biosynthesis protein D compare
LU632_RS07980 nuoE -0.9 -1.0 NADH-quinone oxidoreductase subunit NuoE compare
LU632_RS22865 aroB -0.9 -1.7 3-dehydroquinate synthase compare
LU632_RS19825 -0.9 -5.7 methionine ABC transporter permease MetI compare
LU632_RS20930 -0.9 -1.5 hypothetical protein compare
LU632_RS09915 ompC -0.9 -6.4 porin OmpC compare
LU632_RS11560 pspA -0.9 -1.4 phage shock protein PspA compare
LU632_RS23970 rfaH -0.9 -4.6 transcription/translation regulatory transformer protein RfaH compare
LU632_RS25495 -0.9 -1.3 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS14040 -0.9 -1.6 transposase compare
LU632_RS14735 -0.9 -3.4 glycine zipper 2TM domain-containing protein compare
LU632_RS08190 apbE -0.9 -1.2 FAD:protein FMN transferase ApbE compare
LU632_RS06735 -0.9 -5.7 DUF1176 domain-containing protein compare
LU632_RS24880 pstS -0.9 -3.0 phosphate ABC transporter substrate-binding protein PstS compare
LU632_RS26070 -0.9 -6.5 phage terminase large subunit compare
LU632_RS19820 metN -0.9 -5.6 methionine ABC transporter ATP-binding protein MetN compare
LU632_RS16415 tatE -0.9 -0.9 twin-arginine translocase subunit TatE compare
LU632_RS09680 artJ -0.9 -3.0 arginine ABC transporter substrate-binding protein compare
LU632_RS04305 -0.8 -1.2 DNA primase compare
LU632_RS02085 cysQ -0.8 -1.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
LU632_RS23005 -0.8 -3.9 DeoR/GlpR family transcriptional regulator compare
LU632_RS13170 -0.8 -1.3 YoaH family protein compare
LU632_RS26040 -0.8 -5.4 DUF2213 domain-containing protein compare
LU632_RS06185 ptrA -0.8 -2.0 pitrilysin compare
LU632_RS06625 cysK -0.8 -3.0 cysteine synthase A compare
LU632_RS10745 sirB1 -0.8 -1.7 invasion regulator SirB1 compare
LU632_RS11465 -0.8 -5.5 carboxypeptidase M32 compare
LU632_RS10295 -0.8 -2.1 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
LU632_RS19750 -0.8 -2.2 PhzF family phenazine biosynthesis protein compare
LU632_RS24450 hdfR -0.8 -2.3 HTH-type transcriptional regulator HdfR compare
LU632_RS04410 -0.8 -1.9 Tn3 family transposase compare
LU632_RS02910 rsmH -0.8 -4.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS14010 ldcA -0.8 -2.9 muramoyltetrapeptide carboxypeptidase compare
LU632_RS19980 glnD -0.8 -1.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
LU632_RS21580 -0.8 -1.9 type II toxin-antitoxin system RelE/ParE family toxin compare
LU632_RS15395 lepA -0.8 -2.1 translation elongation factor 4 compare
LU632_RS18500 tgt -0.8 -1.8 tRNA guanosine(34) transglycosylase Tgt compare
LU632_RS18455 panE -0.8 -3.2 2-dehydropantoate 2-reductase compare
LU632_RS13950 ychF -0.8 -1.8 redox-regulated ATPase YchF compare
LU632_RS21750 rnr -0.8 -4.8 ribonuclease R compare
LU632_RS06435 cysC -0.7 -4.3 adenylyl-sulfate kinase compare
LU632_RS16490 arnC -0.7 -5.1 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
LU632_RS00895 tuf -0.7 -3.4 elongation factor Tu compare
LU632_RS01270 ulaR -0.7 -2.4 HTH-type transcriptional regulator UlaR compare
LU632_RS19830 -0.7 -5.2 MetQ/NlpA family lipoprotein compare
LU632_RS03070 aroP -0.7 -5.0 aromatic amino acid transporter AroP compare
LU632_RS16485 arnA -0.7 -5.3 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
LU632_RS03545 -0.7 -1.1 hypothetical protein compare
LU632_RS07855 dedD -0.7 -1.9 cell division protein DedD compare
LU632_RS04250 yiaK -0.7 -3.2 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS08870 -0.7 -3.1 glycosyltransferase family 2 protein compare
LU632_RS10325 bssS -0.7 -3.6 biofilm formation regulator BssS compare
LU632_RS09705 clpA -0.7 -4.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LU632_RS24700 asnC -0.7 -2.8 transcriptional regulator AsnC compare
LU632_RS19275 ftsE -0.7 -4.5 cell division ATP-binding protein FtsE compare
LU632_RS16250 nagA -0.7 -3.0 N-acetylglucosamine-6-phosphate deacetylase compare
LU632_RS18420 -0.7 -1.1 LysE family translocator compare


Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in melonxylem experiments