Experiment set7S198 for Erwinia tracheiphila SCR3

Compare to:

CucXylem

200 most important genes:

  gene name fitness t score description  
LU632_RS15245 purE -7.2 -4.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS08885 -6.3 -4.3 ABC transporter ATP-binding protein compare
LU632_RS08880 -5.9 -4.1 ABC transporter permease compare
LU632_RS21940 -5.4 -3.7 glycosyltransferase compare
LU632_RS08870 -4.9 -11.4 glycosyltransferase family 2 protein compare
LU632_RS07865 purF -4.9 -19.1 amidophosphoribosyltransferase compare
LU632_RS17975 purL -4.8 -17.0 phosphoribosylformylglycinamidine synthase compare
LU632_RS21930 -4.8 -8.0 glycosyltransferase compare
LU632_RS18005 -4.7 -7.8 O-antigen ligase family protein compare
LU632_RS24250 wecA -4.6 -16.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
LU632_RS16480 -4.4 -4.3 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS08865 rfbC -4.3 -9.0 dTDP-4-dehydrorhamnose 3,5-epimerase compare
LU632_RS01015 purD -4.2 -9.6 phosphoribosylamine--glycine ligase compare
LU632_RS08275 purM -4.2 -7.9 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS15250 purK -4.1 -2.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS08855 rfbD -4.0 -12.0 dTDP-4-dehydrorhamnose reductase compare
LU632_RS01020 purH -4.0 -3.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS08860 rfbA -3.9 -12.0 glucose-1-phosphate thymidylyltransferase RfbA compare
LU632_RS20950 pyrB -3.7 -11.7 aspartate carbamoyltransferase compare
LU632_RS02750 carB -3.6 -16.8 carbamoyl-phosphate synthase large subunit compare
LU632_RS12500 pyrF -3.5 -10.1 orotidine-5'-phosphate decarboxylase compare
LU632_RS10340 pyrC -3.5 -11.7 dihydroorotase compare
LU632_RS21875 gpsA -3.4 -14.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS09955 pyrD -3.4 -12.8 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS08335 -3.4 -3.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS12925 rssB -3.3 -2.3 two-component system response regulator RssB compare
LU632_RS08875 -3.3 -6.2 hypothetical protein compare
LU632_RS06635 zipA -3.3 -5.0 cell division protein ZipA compare
LU632_RS02755 carA -3.2 -9.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS16115 sdhC -3.1 -5.8 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS22365 pgi -3.1 -9.9 glucose-6-phosphate isomerase compare
LU632_RS21955 -3.1 -2.1 glycosyltransferase family 4 protein compare
LU632_RS16090 odhB -2.9 -1.9 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS21365 mdh -2.8 -6.9 malate dehydrogenase compare
LU632_RS22015 pyrE -2.7 -6.6 orotate phosphoribosyltransferase compare
LU632_RS08850 rfbB -2.7 -2.6 dTDP-glucose 4,6-dehydratase compare
LU632_RS10270 -2.7 -1.8 glucan biosynthesis protein G compare
LU632_RS06615 ptsI -2.7 -15.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS05460 -2.6 -2.5 YggS family pyridoxal phosphate-dependent enzyme compare
LU632_RS16105 sdhA -2.6 -9.7 succinate dehydrogenase flavoprotein subunit compare
LU632_RS02050 miaA -2.5 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LU632_RS12910 -2.4 -1.6 NAD-dependent epimerase compare
LU632_RS16475 arnT -2.4 -14.1 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
LU632_RS14835 plsX -2.4 -7.2 phosphate acyltransferase PlsX compare
LU632_RS08260 ppk1 -2.3 -7.6 polyphosphate kinase 1 compare
LU632_RS02070 hflC -2.3 -3.9 protease modulator HflC compare
LU632_RS05855 serA -2.3 -11.9 phosphoglycerate dehydrogenase compare
LU632_RS16120 -2.1 -15.6 citrate synthase compare
LU632_RS09730 trxB -2.1 -3.3 thioredoxin-disulfide reductase compare
LU632_RS09745 -2.1 -2.6 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS22865 aroB -2.0 -2.6 3-dehydroquinate synthase compare
LU632_RS08025 nuoN -2.0 -8.5 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS07975 nuoC -1.9 -13.3 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS07995 nuoH -1.9 -6.2 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS07190 -1.9 -3.3 tRNA-Arg compare
LU632_RS02545 serB -1.9 -2.1 phosphoserine phosphatase compare
LU632_RS22930 pckA -1.8 -10.1 phosphoenolpyruvate carboxykinase (ATP) compare
LU632_RS08015 nuoL -1.8 -11.2 NADH-quinone oxidoreductase subunit L compare
LU632_RS18100 htpG -1.8 -5.9 molecular chaperone HtpG compare
LU632_RS11245 slyB -1.8 -3.9 outer membrane lipoprotein SlyB compare
LU632_RS17485 -1.8 -2.6 hypothetical protein compare
LU632_RS07985 nuoF -1.8 -7.7 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS21750 rnr -1.8 -9.6 ribonuclease R compare
LU632_RS07990 nuoG -1.8 -9.7 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS02835 thiB -1.7 -11.5 thiamine ABC transporter substrate binding subunit compare
LU632_RS02065 hflK -1.7 -3.7 FtsH protease activity modulator HflK compare
LU632_RS16110 sdhD -1.7 -4.2 succinate dehydrogenase membrane anchor subunit compare
LU632_RS08830 galE -1.7 -12.6 UDP-glucose 4-epimerase GalE compare
LU632_RS07965 -1.7 -7.8 NADH-quinone oxidoreductase subunit A compare
LU632_RS18350 tig -1.6 -5.8 trigger factor compare
LU632_RS05515 speB -1.6 -2.2 agmatinase compare
LU632_RS08005 nuoJ -1.6 -7.2 NADH-quinone oxidoreductase subunit J compare
LU632_RS00330 -1.6 -9.0 dicarboxylate/amino acid:cation symporter compare
LU632_RS19580 fabR -1.6 -2.5 HTH-type transcriptional repressor FabR compare
LU632_RS08010 nuoK -1.6 -5.1 NADH-quinone oxidoreductase subunit NuoK compare
LU632_RS23970 rfaH -1.6 -6.7 transcription/translation regulatory transformer protein RfaH compare
LU632_RS15385 rnc -1.6 -2.8 ribonuclease III compare
LU632_RS25495 -1.6 -2.2 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS16095 sucA -1.5 -1.0 2-oxoglutarate dehydrogenase E1 component compare
LU632_RS09475 mntR -1.5 -5.7 manganese-binding transcriptional regulator MntR compare
LU632_RS10275 mdoH -1.5 -2.6 glucans biosynthesis glucosyltransferase MdoH compare
LU632_RS07970 -1.5 -8.3 NADH-quinone oxidoreductase subunit B compare
LU632_RS08000 nuoI -1.5 -4.6 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS05410 mltC -1.5 -8.9 membrane-bound lytic murein transglycosylase MltC compare
LU632_RS08020 nuoM -1.5 -7.2 NADH-quinone oxidoreductase subunit M compare
LU632_RS02730 rsmA -1.5 -2.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LU632_RS02830 thiP -1.4 -9.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP compare
LU632_RS00115 -1.4 -7.4 acyltransferase compare
LU632_RS10295 -1.4 -4.7 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
LU632_RS06340 barA -1.4 -3.7 two-component sensor histidine kinase BarA compare
LU632_RS17320 fruK -1.4 -4.3 1-phosphofructokinase compare
LU632_RS12350 -1.4 -1.7 adenosine deaminase compare
LU632_RS00895 tuf -1.4 -5.5 elongation factor Tu compare
LU632_RS02900 cra -1.4 -7.4 catabolite repressor/activator compare
LU632_RS02825 thiQ -1.4 -8.2 thiamine ABC transporter ATP-binding protein ThiQ compare
LU632_RS12905 hns -1.4 -1.4 DNA-binding transcriptional regulator H-NS compare
LU632_RS16250 nagA -1.3 -5.7 N-acetylglucosamine-6-phosphate deacetylase compare
LU632_RS15415 rseB -1.3 -4.2 sigma-E factor regulatory protein RseB compare
LU632_RS02865 leuD -1.3 -7.5 3-isopropylmalate dehydratase small subunit compare
LU632_RS01085 -1.3 -1.9 class I SAM-dependent methyltransferase compare
LU632_RS17785 bamB -1.3 -4.8 outer membrane protein assembly factor BamB compare
LU632_RS24155 -1.3 -2.0 class I adenylate cyclase compare
LU632_RS14860 rne -1.3 -1.9 ribonuclease E compare
LU632_RS12850 cls -1.3 -2.0 cardiolipin synthase compare
LU632_RS22710 -1.3 -3.7 transcriptional regulator compare
LU632_RS19620 argE -1.3 -5.5 acetylornithine deacetylase compare
LU632_RS02110 -1.3 -10.0 translocation/assembly module TamB compare
LU632_RS08190 apbE -1.3 -1.6 FAD:protein FMN transferase ApbE compare
LU632_RS26015 -1.3 -4.3 hypothetical protein compare
LU632_RS02140 -1.3 -2.4 ribosome-associated protein compare
LU632_RS17325 fruB -1.3 -8.3 fused PTS fructose transporter subunit IIA/HPr protein compare
LU632_RS05510 speA -1.3 -1.7 biosynthetic arginine decarboxylase compare
LU632_RS09245 -1.2 -5.0 L,D-transpeptidase family protein compare
LU632_RS21880 secB -1.2 -3.2 protein-export chaperone SecB compare
LU632_RS15395 lepA -1.2 -3.3 translation elongation factor 4 compare
LU632_RS20090 pcnB -1.2 -4.7 polynucleotide adenylyltransferase PcnB compare
LU632_RS16490 arnC -1.2 -9.3 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
LU632_RS16100 -1.2 -2.5 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS02870 leuC -1.2 -7.5 3-isopropylmalate dehydratase large subunit compare
LU632_RS24260 trxA -1.2 -4.5 thioredoxin TrxA compare
LU632_RS02085 cysQ -1.2 -1.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
LU632_RS09915 ompC -1.2 -8.5 porin OmpC compare
LU632_RS16495 arnB -1.2 -6.9 UDP-4-amino-4-deoxy-L-arabinose aminotransferase compare
LU632_RS02105 -1.1 -8.2 autotransporter assembly complex protein TamA compare
LU632_RS19825 -1.1 -7.0 methionine ABC transporter permease MetI compare
LU632_RS09795 aroA -1.1 -6.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS16485 arnA -1.1 -7.3 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
LU632_RS25005 -1.1 -3.9 hypothetical protein compare
LU632_RS11560 pspA -1.1 -1.4 phage shock protein PspA compare
LU632_RS02910 rsmH -1.1 -5.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS06335 -1.0 -6.0 glycerate kinase compare
LU632_RS08815 -1.0 -4.0 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS12325 -1.0 -3.2 H-NS histone family protein compare
LU632_RS02525 deoB -1.0 -6.6 phosphopentomutase compare
LU632_RS08820 -1.0 -6.0 lipopolysaccharide biosynthesis protein compare
LU632_RS22445 aroE -1.0 -1.9 shikimate dehydrogenase compare
LU632_RS13950 ychF -1.0 -2.3 redox-regulated ATPase YchF compare
LU632_RS20675 glnE -1.0 -7.0 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
LU632_RS18995 proC -1.0 -2.5 pyrroline-5-carboxylate reductase compare
LU632_RS11040 -1.0 -7.8 FAD-binding oxidoreductase compare
LU632_RS24895 pstB -1.0 -2.2 phosphate ABC transporter ATP-binding protein PstB compare
LU632_RS15425 rpoE -1.0 -5.7 RNA polymerase sigma factor RpoE compare
LU632_RS07775 aroC -1.0 -2.8 chorismate synthase compare
LU632_RS06610 crr -1.0 -2.3 PTS glucose transporter subunit IIA compare
LU632_RS05535 epd -1.0 -3.4 erythrose-4-phosphate dehydrogenase compare
LU632_RS07950 yfbR -0.9 -4.1 5'-deoxynucleotidase compare
LU632_RS18890 brnQ -0.9 -6.4 branched-chain amino acid transport system II carrier protein compare
LU632_RS02875 leuB -0.9 -5.9 3-isopropylmalate dehydrogenase compare
LU632_RS13460 cmoB -0.9 -4.0 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
LU632_RS13370 pyk -0.9 -6.2 pyruvate kinase compare
LU632_RS19665 ftsN -0.9 -2.4 cell division protein FtsN compare
LU632_RS19610 argB -0.9 -3.4 acetylglutamate kinase compare
LU632_RS12730 rluB -0.9 -5.3 23S rRNA pseudouridine(2605) synthase RluB compare
LU632_RS24405 -0.9 -6.5 branched-chain amino acid transaminase compare
LU632_RS26050 -0.9 -7.1 DUF1073 domain-containing protein compare
LU632_RS12800 -0.9 -3.6 envelope biogenesis factor ElyC compare
LU632_RS24885 pstC -0.9 -2.2 phosphate ABC transporter permease PstC compare
LU632_RS06525 -0.9 -3.1 Nramp family divalent metal transporter compare
LU632_RS04350 -0.9 -1.8 hypothetical protein compare
LU632_RS13610 -0.9 -3.0 glutamine amidotransferase compare
LU632_RS19275 ftsE -0.8 -4.4 cell division ATP-binding protein FtsE compare
LU632_RS26035 -0.8 -6.1 hypothetical protein compare
LU632_RS21530 -0.8 -2.2 terminase large subunit compare
LU632_RS05065 -0.8 -2.3 helix-turn-helix domain-containing protein compare
LU632_RS17830 -0.8 -0.6 MgtC/SapB family protein compare
LU632_RS02880 leuA -0.8 -5.9 2-isopropylmalate synthase compare
LU632_RS18455 panE -0.8 -3.6 2-dehydropantoate 2-reductase compare
LU632_RS00630 adhP -0.8 -4.3 alcohol dehydrogenase AdhP compare
LU632_RS06045 galR -0.8 -4.5 HTH-type transcriptional regulator GalR compare
LU632_RS06185 ptrA -0.8 -2.1 pitrilysin compare
LU632_RS06210 argA -0.8 -5.2 amino-acid N-acetyltransferase compare
LU632_RS19930 rseP -0.8 -4.0 sigma E protease regulator RseP compare
LU632_RS18500 tgt -0.8 -2.0 tRNA guanosine(34) transglycosylase Tgt compare
LU632_RS08280 upp -0.8 -1.5 uracil phosphoribosyltransferase compare
LU632_RS19830 -0.8 -5.1 MetQ/NlpA family lipoprotein compare
LU632_RS24170 hemX -0.8 -4.1 uroporphyrinogen-III C-methyltransferase compare
LU632_RS21235 mlaD -0.8 -4.3 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS01555 -0.8 -3.9 type II toxin-antitoxin system HicB family antitoxin compare
LU632_RS22010 slmA -0.8 -2.8 nucleoid occlusion factor SlmA compare
LU632_RS24490 -0.8 -1.5 hypothetical protein compare
LU632_RS20495 -0.8 -2.5 hypothetical protein compare
LU632_RS17790 -0.8 -2.4 YfgM family protein compare
LU632_RS21755 -0.8 -5.4 adenylosuccinate synthase compare
LU632_RS19860 -0.7 -1.8 YaeP family protein compare
LU632_RS10625 -0.7 -1.8 N-acetylmuramoyl-L-alanine amidase compare
LU632_RS25645 pilP -0.7 -1.8 type IV pilus biogenesis protein PilP compare
LU632_RS18420 -0.7 -1.1 LysE family translocator compare
LU632_RS02555 nadR -0.7 -4.8 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR compare
LU632_RS06625 cysK -0.7 -2.9 cysteine synthase A compare
LU632_RS19820 metN -0.7 -5.3 methionine ABC transporter ATP-binding protein MetN compare
LU632_RS08750 asmA -0.7 -4.1 outer membrane assembly protein AsmA compare
LU632_RS21225 mlaB -0.7 -2.4 lipid asymmetry maintenance protein MlaB compare
LU632_RS07720 -0.7 -1.1 hypothetical protein compare
LU632_RS17185 -0.7 -2.9 RNA polymerase subunit sigma-70 compare
LU632_RS18685 -0.7 -1.5 DUF2635 domain-containing protein compare
LU632_RS25010 -0.7 -3.6 hypothetical protein compare
LU632_RS05130 -0.7 -1.1 TIGR03750 family conjugal transfer protein compare
LU632_RS21245 mlaF -0.7 -3.9 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS26030 -0.7 -4.6 DUF2184 domain-containing protein compare
LU632_RS03070 aroP -0.7 -5.3 aromatic amino acid transporter AroP compare


Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in cucxylem experiments