Experiment set7S166 for Escherichia coli BL21

Compare to:

Bas50

200 most important genes:

  gene name fitness t score description  
ECD_03257 -2.5 -2.9 response regulator in two-component regulatory system with EnvZ compare
ECD_01039 -2.1 -2.3 curlin subunit, amyloid curli fibers, cryptic compare
ECD_t00077 -2.1 -1.3 tRNA-Thr compare
ECD_01162 -2.1 -2.7 fatty acid metabolism regulon transcriptional regulator compare
ECD_01774 -2.1 -2.7 ribonuclease D compare
ECD_03692 -2.0 -6.1 magnesium/nickel/cobalt transporter compare
ECD_01826 -2.0 -2.3 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_03031 -1.8 -6.9 polynucleotide phosphorylase/polyadenylase compare
ECD_04030 -1.8 -1.5 phosphatidylserine decarboxylase compare
ECD_03797 -1.8 -4.5 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_00423 -1.8 -4.0 gap repair protein compare
ECD_03729 -1.8 -2.0 TatABCE protein translocation system subunit compare
ECD_01681 -1.8 -2.0 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_01022 -1.8 -3.8 ATP-binding protein; putative PhoH family P-loop ATPase compare
ECD_03037 -1.7 -3.2 ribosome maturation factor for 30S subunits compare
ECD_01957 -1.7 -2.2 GDP-mannose mannosyl hydrolase compare
ECD_00596 -1.7 -1.9 TatABCE protein translocation system subunit compare
ECD_03659 -1.7 -1.1 thioredoxin 1 compare
ECD_02401 -1.7 -4.5 exonuclease VII, large subunit compare
ECD_00053 -1.6 -3.5 diadenosine tetraphosphatase compare
ECD_03064 -1.6 -3.3 periplasmic membrane-anchored LPS-binding protein; LPS export protein compare
ECD_03119 -1.6 -1.8 global DNA-binding transcriptional dual regulator compare
ECD_01852 -1.6 -1.8 chemotaxis regulator, protein phosphatase for CheY compare
ECD_03816 -1.6 -3.4 molecular chaperone and ATPase component of HslUV protease compare
ECD_03625 -1.6 -2.1 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_03897 -1.5 -3.1 glucosephosphate isomerase compare
ECD_02726 -1.5 -3.9 site-specific tyrosine recombinase compare
ECD_02909 -1.5 -4.0 DUF1190 family protein compare
ECD_02549 -1.5 -6.3 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_02470 -1.4 -4.3 ATP-dependent RNA helicase compare
ECD_02507 -1.4 -0.9 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_04038 -1.4 -1.6 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_01049 -1.4 -3.7 putative drug efflux system protein compare
ECD_01042 -1.4 -1.3 O-acetyl-ADP-ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit compare
ECD_03898 -1.4 -1.7 extracellular polysaccharide production threonine-rich protein compare
ECD_03556 -1.4 -2.0 ilvB operon leader peptide compare
ECD_00165 -1.3 -3.8 uridylyltransferase compare
ECD_02204 -1.3 -1.0 NADH:ubiquinone oxidoreductase, membrane subunit K compare
ECD_00142 -1.3 -2.8 poly(A) polymerase compare
ECD_00492 -1.3 -1.3 hypothetical protein compare
ECD_03067 -1.3 -1.6 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_00574 -1.3 -4.6 alkyl hydroperoxide reductase, C22 subunit compare
ECD_01972 -1.3 -1.8 uridine/cytidine kinase compare
ECD_03817 -1.2 -3.4 peptidase component of the HslUV protease compare
ECD_02027 -1.2 -1.5 ADP-ribosylglycohydrolase family protein compare
ECD_00006 -1.2 -4.4 peroxide resistance protein, lowers intracellular iron compare
ECD_02324 -1.2 -2.3 sulfate/thiosulfate ABC transporter permease compare
ECD_04039 -1.2 -4.9 global sRNA chaperone; HF-I, host factor for RNA phage Q beta replication compare
ECD_03801 -1.2 -6.3 6-phosphofructokinase I compare
ECD_00889 -1.2 -1.9 leucyl/phenylalanyl-tRNA-protein transferase compare
ECD_01241 -1.2 -1.6 putative RNA binding protein compare
ECD_01313 -1.2 -2.6 p-aminobenzoyl-glutamate transporter; membrane protein compare
ECD_00032 -1.2 -1.5 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) compare
ECD_03213 -1.2 -2.0 putative antitoxin for Fic compare
ECD_03509 -1.2 -4.2 ATP-dependent DNA helicase compare
ECD_03818 -1.2 -2.4 essential cell division protein compare
ECD_03220 -1.1 -2.0 small lipoprotein compare
ECD_01787 -1.1 -2.8 fused mannose-specific PTS enzymes: IIA component/IIB component compare
ECD_02128 -1.1 -3.3 heme export ABC transporter ATPase compare
ECD_01301 -1.1 -1.5 lipid hydroperoxide peroxidase compare
ECD_03530 -1.1 -1.4 hypothetical protein compare
ECD_02889 -1.1 -3.7 septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) compare
ECD_03097 -1.1 -3.3 l-arginine-responsive arginine metabolism regulon transcriptional regulator compare
ECD_00442 -1.1 -0.9 iron export ABC transporter permease; peroxide resistance protein compare
ECD_02484 -1.1 -4.7 23S rRNA pseudouridine(1911,1915,1917) synthase compare
ECD_00552 -1.1 -2.0 stimulator of EntF adenylation activity, MbtH-like compare
ECD_01307 -1.1 -1.7 murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit compare
ECD_03121 -1.1 -1.0 putative membrane protein compare
ECD_04107 -1.1 -1.4 trehalose-6-P hydrolase compare
ECD_00634 -1.1 -2.1 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_02396 -1.1 -1.8 uncharacterized protein compare
ECD_00487 -1.1 -1.8 Excisionase compare
ECD_00335 -1.1 -2.6 shikimate kinase II compare
ECD_00354 -1.1 -4.5 tRNA-guanine transglycosylase compare
ECD_01053 -1.1 -2.0 putative cytochrome b561 compare
ECD_03583 -1.0 -5.9 gap repair protein compare
ECD_03016 -1.0 -3.9 DnaA initiator-associating factor for replication initiation compare
ECD_03029 -1.0 -3.8 ATP-dependent RNA helicase compare
ECD_02694 -1.0 -0.7 putative LuxR family transcriptional regulator compare
ECD_01486 -1.0 -1.7 UPF0056 family inner membrane protein compare
ECD_r00015 -1.0 -3.8 23S ribosomal RNA compare
ECD_02667 -1.0 -5.2 exonuclease V (RecBCD complex), alpha chain compare
ECD_02919 -1.0 -2.4 motility and biofilm regulator compare
ECD_02171 -0.9 -3.5 2-keto-3-deoxy-L-rhamnonate aldolase compare
ECD_03256 -0.9 -3.4 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_01489 -0.9 -1.3 transcriptional repressor of multiple antibiotic resistance compare
ECD_04051 -0.9 -1.7 UPF0719 family inner membrane protein compare
ECD_01726 -0.9 -1.6 molybdopterin synthase sulfurtransferase compare
ECD_00483 -0.9 -2.4 FimA-like protein compare
ECD_03357 -0.9 -1.0 acid-resistance protein compare
ECD_03199 -0.9 -1.6 phi X174 lysis protein compare
ECD_00606 -0.9 -3.2 ribosomal silencing factor compare
ECD_01103 -0.9 -1.4 beta N-acetyl-glucosaminidase compare
ECD_02423 -0.9 -3.1 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor compare
ECD_03022 -0.9 -1.9 GIY-YIG nuclease superfamily protein compare
ECD_00780 -0.9 -3.7 threonine and homoserine efflux system compare
ECD_00109 -0.9 -4.2 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase compare
ECD_01312 -0.9 -1.8 O-6-alkylguanine-DNA:cysteine-protein methyltransferase compare
ECD_01969 -0.9 -1.9 inner membrane protein compare
ECD_02826 -0.9 -0.9 hypothetical protein compare
ECD_01835 -0.8 -0.9 UPF0082 family protein compare
ECD_03727 -0.8 -1.4 aerobic ubiquinone synthesis protein, SCP2 family protein compare
ECD_03910 -0.8 -2.4 hypothetical protein compare
ECD_t00011 -0.8 -1.4 tRNA-Gln compare
ECD_02914 -0.8 -1.8 BMFP family putative fusogenic protein compare
ECD_02548 -0.8 -2.0 regulatory protein for RecA compare
ECD_01019 -0.8 -1.5 putative membrane protein compare
ECD_02220 -0.8 -1.1 UPF0208 family inner membrane protein compare
ECD_00399 -0.8 -1.1 putative DNA-binding transcriptional regulator compare
ECD_04265 -0.8 -3.5 DNA repair protein compare
ECD_04270 -0.8 -2.3 non-canonical purine NTP phosphatase, ITPase/XTPase compare
ECD_00997 -0.8 -1.7 periplasmic sensory protein associated with the TorRS two-component regulatory system compare
ECD_03643 -0.8 -4.1 UPF0438 family protein compare
ECD_00015 -0.8 -3.0 chaperone Hsp40, DnaK co-chaperone compare
ECD_02746 -0.8 -1.6 hypothetical protein compare
ECD_01435 -0.8 -1.2 putative DNA-binding transcriptional regulator compare
ECD_01702 -0.8 -2.8 chito-oligosaccharide deacetylase compare
ECD_00658 -0.8 -1.6 Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor compare
ECD_02724 -0.8 -4.7 ssDNA exonuclease, 5 compare
ECD_00844 -0.8 -2.5 putative phage tail protein compare
ECD_01666 -0.7 -1.3 putative electron transfer flavoprotein subunit compare
ECD_03642 -0.7 -4.7 flhDC operon transcriptional repressor compare
ECD_04250 -0.7 -4.7 peptide chain release factor RF-3 compare
ECD_01651 -0.7 -2.1 SufBCD Fe-S cluster assembly scaffold protein, ATP-binding protein compare
ECD_02732 -0.7 -1.2 UPF0267 family protein compare
ECD_00162 -0.7 -2.9 UPF0325 family protein compare
ECD_00233 -0.7 -2.0 xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase compare
ECD_01977 -0.7 -1.0 ser/thr phosphatase-related protein compare
ECD_00014 -0.7 -1.7 chaperone Hsp70, with co-chaperone DnaJ compare
ECD_t00054 -0.7 -2.2 tRNA-Gly compare
ECD_02742 -0.7 -2.3 FtsZ stabilizer compare
ECD_02118 -0.7 -2.3 essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor compare
ECD_03590 -0.7 -0.6 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_00746 -0.7 -3.4 exision nuclease of nucleotide excision repair, DNA damage recognition component compare
ECD_02335 -0.7 -1.5 N-acetylmuramoyl-l-alanine amidase I compare
ECD_01109 -0.7 -0.9 L,D-transpeptidase linking Lpp to murein compare
ECD_00749 -0.7 -1.8 inactive molybdopterin adenylyltransferase compare
ECD_04308 -0.7 -1.5 uncharacterized protein compare
ECD_00955 -0.7 -1.3 paraquat-inducible, SoxRS-regulated MCE domain protein compare
ECD_04259 -0.7 -2.4 phosphopentomutase compare
ECD_00867 -0.7 -1.0 arginine ABC transporter permease compare
ECD_00577 -0.7 -2.5 putative Zn-dependent NAD(P)-binding oxidoreductase compare
ECD_01584 -0.7 -1.9 putative outer membrane porin for beta-glucuronides porin protein compare
ECD_01300 -0.7 -1.4 aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase compare
ECD_03096 -0.7 -2.0 malate dehydrogenase, NAD(P)-binding compare
ECD_03687 -0.7 -0.7 site-specific tyrosine recombinase compare
ECD_01782 -0.7 -1.7 aminodeoxychorismate synthase, subunit I compare
ECD_00612 -0.7 -1.3 DUF1451 family protein compare
ECD_00834 -0.7 -1.0 putative capsid scaffolding protein compare
ECD_00982 -0.7 -1.5 cytochrome bd-II oxidase, subunit II compare
ECD_00933 -0.7 -1.7 outer membrane porin 1a (Ia compare
ECD_03624 -0.7 -4.2 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein compare
ECD_01624 -0.7 -1.1 glutaredoxin-4 compare
ECD_03960 -0.7 -2.0 D-allose ABC transporter periplasmic binding protein compare
ECD_01906 -0.7 -0.9 hypothetical protein compare
ECD_02556 -0.7 -2.2 sorbitol-responsive srl operon transcriptional activator compare
ECD_00273 -0.7 -1.9 putative inner membrane protein compare
ECD_00617 -0.7 -2.7 ribonucleoside hydrolase 1 compare
ECD_00688 -0.7 -2.8 succinyl-CoA synthetase, NAD(P)-binding, alpha subunit compare
ECD_00555 -0.7 -1.1 ferrienterobactin ABC transporter ATPase compare
ECD_02244 -0.7 -2.0 putative semialdehyde dehydrogenase compare
ECD_03623 -0.7 -1.5 ATP synthase, membrane-bound accessory factor compare
ECD_03987 -0.7 -2.4 adi system transcriptional activator compare
ECD_00384 -0.7 -3.8 muropeptide transporter compare
ECD_04070 -0.7 -1.1 50S ribosomal subunit protein L9 compare
ECD_02177 -0.7 -1.2 nucleoside triphosphatase compare
ECD_00920 -0.7 -1.6 DUF1006 family protein with C-terminal wHTH domain compare
ECD_00378 -0.7 -0.9 hypothetical protein compare
ECD_01878 -0.6 -1.9 excinuclease UvrABC, endonuclease subunit compare
ECD_03238 -0.6 -1.5 D-ribulose-5-phosphate 3-epimerase compare
ECD_02904 -0.6 -2.4 3',5' cAMP phosphodiesterase compare
ECD_00695 -0.6 -1.0 putative inner membrane protein in cydABX-ybgE operon compare
ECD_02734 -0.6 -3.3 putative NAD(P)-dependent oxidoreductase compare
ECD_02432 -0.6 -0.8 3-phenylpropionate dioxygenase, ferredoxin subunit compare
ECD_01424 -0.6 -1.1 nitrate reductase 2 (NRZ), delta subunit (assembly subunit) compare
ECD_01615 -0.6 -1.7 putative efflux protein (PET) component of YdhJK efflux pump compare
ECD_01172 -0.6 -0.7 periplasmic trehalase compare
ECD_02063 -0.6 -2.5 D-lactate dehydrogenase, FAD-binding, NADH independent compare
ECD_02228 -0.6 -2.0 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase compare
ECD_04062 -0.6 -0.9 L-ascorbate-specific enzyme IIA component of PTS compare
ECD_00899 -0.6 -0.8 dimethyl sulfoxide reductase, anaerobic, subunit B compare
ECD_00459 -0.6 -1.0 tartronate semialdehyde reductase, NADH-dependent compare
ECD_02207 -0.6 -1.3 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_01794 -0.6 -3.0 DUF2527 family heat-induced protein compare
ECD_02320 -0.6 -1.6 WGR domain protein compare
ECD_00680 -0.6 -2.4 citrate synthase compare
ECD_02736 -0.6 -1.1 glycine cleavage complex lipoylprotein compare
ECD_01979 -0.6 -1.4 multidrug efflux system, subunit A compare
ECD_00509 -0.6 -1.4 DLP12 prophage; putative lipoprotein compare
ECD_03876 -0.6 -3.3 DUF416 domain protein conserved
ECD_03141 -0.6 -1.6 mechanosensitive channel protein, high conductance compare
ECD_00100 -0.6 -1.6 dGTP-preferring nucleoside triphosphate pyrophosphohydrolase compare
ECD_00405 -0.6 -1.8 outer membrane lipoprotein compare
ECD_01721 -0.6 -1.1 TVP38/TMEM64 family inner membrane protein compare
ECD_01148 -0.6 -2.2 hypothetical protein compare
ECD_00828 -0.6 -1.5 hypothetical protein compare
ECD_01210 -0.6 -0.7 putative patatin-like family phospholipase compare
ECD_01586 -0.6 -1.0 beta-D-glucuronidase compare
ECD_00584 -0.6 -1.2 citrate lyase, citryl-ACP lyase (beta) subunit compare
ECD_00629 -0.6 -2.6 tRNA-i(6)A37 methylthiotransferase compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms