Experiment set7S166 for Escherichia coli BL21

Compare to:

Bas50

200 most detrimental genes:

  gene name fitness t score description  
ECD_01277 +1.6 3.3 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase compare
ECD_02738 +1.4 2.3 2-octaprenylphenol hydroxylase, FAD-dependent compare
ECD_02840 +1.4 2.4 secretin (GspDbeta) OM localization lipoprotein pilotin compare
ECD_00374 +1.2 1.8 phage Phi6 host factor, ATP/GTP binding protein compare
ECD_01565 +1.2 2.1 putative arabinose efflux transporter compare
ECD_01599 +1.1 1.9 SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex compare
ECD_01441 +1.1 2.8 D,D-dipeptide ABC transporter ATPase compare
ECD_01230 +1.1 1.7 outer membrane protein W compare
ECD_01375 +1.1 2.2 putative periplasmic protein compare
ECD_03486 +1.1 5.7 UDP-glucose:(Glucosyl) LPS alpha1,3-glucosyltransferase WaaO compare
ECD_02834 +1.0 4.3 putative type II secretion protein GspH compare
ECD_01886 +1.0 1.7 membrane-anchored, periplasmic TMAO, DMSO reductase compare
ECD_01950 +1.0 2.3 putative glycosyl transferase compare
ECD_03944 +1.0 2.1 formate-dependent nitrite reductase, 4Fe4S subunit compare
ECD_02173 +1.0 2.8 L-rhamnonate dehydratase compare
ECD_00402 +1.0 2.2 nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB compare
ECD_02321 +1.0 3.3 cysteine synthase B (O-acetylserine sulfhydrolase B) compare
ECD_02836 +0.9 5.1 putative type II secretion protein GspF compare
ECD_03733 +0.9 5.9 transcription antitermination protein compare
ECD_00434 +0.9 1.4 putative DNA-binding transcriptional regulator compare
ECD_00880 +0.9 1.9 aquaporin Z compare
ECD_03242 +0.9 1.5 shikimate kinase I compare
ECD_02305 +0.9 2.7 DUF1323 family putative DNA-binding protein compare
ECD_02839 +0.9 4.1 putative secretion pathway protein, C-type protein compare
ECD_01160 +0.9 3.2 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I compare
ECD_04212 +0.9 1.6 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB compare
ECD_04018 +0.9 1.5 entericidin A membrane lipoprotein, antidote entericidin B compare
ECD_02365 +0.8 1.5 palmitoyl-CoA esterase activity, uncertain physiological substrate compare
ECD_01044 +0.8 1.4 OPG biosynthetic transmembrane succinyltransferase compare
ECD_00500 +0.8 2.1 DLP12 prophage; endonuclease RUS compare
ECD_00455 +0.8 1.6 ureidoglycolate lyase, releasing urea compare
ECD_00704 +0.8 2.4 nicotinamide riboside transporter compare
ECD_03488 +0.8 2.2 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_01918 +0.8 2.5 LysR family putative transcriptional regulator compare
ECD_02831 +0.8 5.2 putative type II secretion protein GspK compare
ECD_10005 +0.8 1.7 Excisionase compare
ECD_03451 +0.8 1.7 TPR-like repeat protein compare
ECD_04119 +0.8 1.2 SopA-central-domain-like hexapeptide repeat protein compare
ECD_03481 +0.8 2.6 UDP-galactose:(Galactosyl) LPS alpha1,2-galactosyltransferase compare
ECD_02837 +0.8 4.5 putative type II secretion protein GspE compare
ECD_03489 +0.8 4.6 lipopolysaccharide core biosynthesis protein compare
ECD_01575 +0.8 1.4 dihydromonapterin reductase, NADPH-dependent; dihydrofolate reductase isozyme compare
ECD_02833 +0.8 2.4 putative type II secretion protein GspI compare
ECD_01013 +0.8 3.0 putative aminoacrylate deaminase, reactive intermediate detoxification; weak enamine/imine deaminase activity compare
ECD_04185 +0.8 1.1 periplasmic chaperone compare
ECD_02254 +0.8 1.6 chorismate synthase compare
ECD_03746 +0.7 3.5 periplasmic protein disulfide isomerase I compare
ECD_01960 +0.7 1.8 putative acyl transferase compare
ECD_02284 +0.7 2.0 formyl-CoA transferase, NAD(P)-binding compare
ECD_00807 +0.7 0.9 deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx compare
ECD_00389 +0.7 3.0 ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease compare
ECD_00269 +0.7 1.3 choline-inducible betIBA-betT divergent operon transcriptional repressor compare
ECD_02217 +0.7 3.6 putative transporter compare
ECD_02508 +0.7 1.3 tmRNA-binding trans-translation protein compare
ECD_03046 +0.7 3.1 transcript cleavage factor compare
ECD_00231 +0.7 2.4 peptide chain release factor 2 compare
ECD_01374 +0.7 1.8 cytochrome b561 compare
ECD_01379 +0.7 1.5 putative DNA-binding transcriptional regulator compare
ECD_01897 +0.7 2.3 ssuEADCB/tauABCD operon transcriptional activator compare
ECD_01026 +0.7 1.1 biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1,6-N-acetyl-D-glucosamine export protein compare
ECD_02404 +0.7 0.9 BamABCDE complex OM biogenesis lipoprotein compare
ECD_02835 +0.7 4.0 putative type II secretion protein GspG compare
ECD_02130 +0.7 1.5 nitrate reductase, small, cytochrome C550 subunit, periplasmic compare
ECD_01529 +0.6 1.6 Qin prophage; uncharacterized protein compare
ECD_04389 +0.6 1.2 hypothetical protein compare
ECD_01706 +0.6 1.2 N,N'-diacetylchitobiose-specific enzyme IIC component of PTS compare
ECD_02537 +0.6 5.0 putative L-valine exporter, norvaline resistance protein compare
ECD_00407 +0.6 1.3 DUF1428 family protein compare
ECD_01912 +0.6 1.8 DNA gyrase inhibitor compare
ECD_01898 +0.6 0.9 nitrogen assimilation regulon transcriptional regulator; autorepressor compare
ECD_00774 +0.6 1.3 23S rRNA m(6)A1618 methyltransferase, SAM-dependent compare
ECD_00593 +0.6 1.5 constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein compare
ECD_03929 +0.6 1.9 DUF419 family protein compare
ECD_00956 +0.6 1.3 DUF330 family putative lipoprotein compare
ECD_01749 +0.6 0.8 D-hexose-6-phosphate epimerase-like protein compare
ECD_02330 +0.6 1.3 penicillin binding protein PBP4B; weak DD-carboxypeptidase activity compare
ECD_03040 +0.6 1.5 preprotein translocase membrane subunit compare
ECD_03671 +0.6 1.7 TDP-Fuc4NAc:lipidIIFuc4NAc transferase compare
ECD_04170 +0.6 1.7 putative enzyme IIB component of PTS compare
ECD_03977 +0.6 2.1 phosphonate ABC transporter ATPase compare
ECD_00831 +0.6 2.2 retron EC86 RNA-directed DNA polymerase-like protein compare
ECD_02867 +0.6 2.6 protein involved with the maturation of hydrogenases 1 and 2 compare
ECD_01887 +0.6 0.9 inner membrane heme subunit for periplasmic YedYZ reductase compare
ECD_02100 +0.6 1.5 UPF0153 cysteine cluster protein compare
ECD_01559 +0.6 1.8 oxidoreductase, membrane subunit compare
ECD_02238 +0.6 0.5 colicin V production protein compare
ECD_02842 +0.6 5.5 putative secreted and surface-associated lipoprotein mucinase compare
ECD_02910 +0.6 2.4 ATP-Grasp family ATPase compare
ECD_01390 +0.6 1.4 IS609 transposase B compare
ECD_00209 +0.6 1.7 lipoprotein compare
ECD_03089 +0.6 4.1 stringent starvation protein A, phage P1 late gene activator, RNAP-associated acid-resistance protein, inactive glutathione S-transferase-like protein compare
ECD_03115 +0.6 2.0 DUF997 family putative inner membrane protein compare
ECD_01814 +0.6 1.4 C-N hydrolase family protein compare
ECD_03962 +0.6 1.3 ribose 5-phosphate isomerase B/allose 6-phosphate isomerase compare
ECD_04362 +0.6 0.8 hypothetical protein compare
ECD_01426 +0.6 1.8 nitrate reductase 2 (NRZ), alpha subunit compare
ECD_00387 +0.6 2.3 peptidyl-prolyl cis/trans isomerase (trigger factor) compare
ECD_01482 +0.6 0.9 succinate semialdehyde dehydrogenase, NAD(P)+-dependent compare
ECD_01645 +0.6 0.7 pyruvate kinase I compare
ECD_02120 +0.6 1.7 response regulator in two-component regulatory system with NarQ compare
ECD_00996 +0.6 2.0 hybrid sensory histidine kinase in two-component regulatory system with TorR compare
ECD_01619 +0.6 1.9 transcriptional repressor for the nemRA-gloA operon, quinone-, glyoxal-, and HOCl-activated compare
ECD_02628 +0.6 2.0 antitoxin of the ChpA-ChpR toxin-antitoxin system compare
ECD_01478 +0.6 0.9 altronate oxidoreductase, NAD-dependent compare
ECD_00962 +0.6 3.5 SOS cell division inhibitor compare
ECD_02116 +0.6 2.5 spermidine nucleoid-associated protein compare
ECD_01577 +0.6 1.1 response regulator of RstAB two-component system compare
ECD_01634 +0.6 1.7 multidrug efflux system transporter compare
ECD_01760 +0.6 2.0 putative MFS transporter, inner membrane protein compare
ECD_01198 +0.6 0.9 putative invasin compare
ECD_03180 +0.6 1.8 putative general secretory pathway component, cryptic compare
ECD_02034 +0.6 1.2 hypothetical protein compare
ECD_02525 +0.6 0.8 DNA binding protein, nucleoid-associated compare
ECD_01274 +0.6 2.1 glutamate--putrescine ligase compare
ECD_02841 +0.5 2.5 bifunctional prepilin leader peptidase/ methylase compare
ECD_00635 +0.5 1.6 glucosamine-6-phosphate deaminase compare
ECD_00794 +0.5 2.0 molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein compare
ECD_01849 +0.5 1.4 proton seal during flagellar secretion compare
ECD_02405 +0.5 1.8 ancillary SecYEG translocon subunit; putative anti-RcsB factor compare
ECD_01015 +0.5 2.3 pyrimidine oxygenase, FMN-dependent compare
ECD_02348 +0.5 1.1 ethanolamine utilization protein, putative carboxysome structural protein compare
ECD_03353 +0.5 1.1 hypothetical protein compare
ECD_03308 +0.5 1.2 PanD autocleavage accelerator, panothenate synthesis compare
ECD_02915 +0.5 1.6 putative fimbrial-like adhesin protein compare
ECD_00496 +0.5 1.0 DLP12 prophage; putative DNA-binding transcriptional regulator compare
ECD_01396 +0.5 1.0 putative DNA-binding transcriptional regulator and putative aminotransferase compare
ECD_02033 +0.5 1.3 hypothetical protein compare
ECD_01652 +0.5 1.6 component of SufBCD complex compare
ECD_04196 +0.5 2.3 hypochlorite-responsive transcription factor compare
ECD_00082 +0.5 1.2 RsmH methytransferase inhibitor compare
ECD_02132 +0.5 0.9 ferredoxin-type protein compare
ECD_00261 +0.5 1.7 reactive chlorine species (RCS)-specific activator of the rcl genes compare
ECD_04048 +0.5 1.3 DUF2170 family protein compare
ECD_01275 +0.5 1.9 gamma-glutamyl-gamma-aminobutyrate hydrolase compare
ECD_02907 +0.5 2.0 transport channel compare
ECD_00490 +0.5 2.1 putative DNA N-6-adenine-methyltransferase of bacteriophage compare
ECD_01138 +0.5 1.8 anti-repressor for YcgE, blue light-responsive; FAD-binding; inactive c-di-GMP phosphodiesterase-like EAL domain protein compare
ECD_02345 +0.5 1.0 ethanolamine utilization protein, HSP70/actin superfamily protein compare
ECD_01925 +0.5 0.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
ECD_00803 +0.5 1.0 repressor of biofilm formation by indole transport regulation compare
ECD_03695 +0.5 0.6 Magnesium and cobalt transport protein corA compare
ECD_00969 +0.5 1.1 putative CoA-binding protein compare
ECD_02528 +0.5 2.4 putative membrane-anchored DUF883 family ribosome-binding protein compare
ECD_04194 +0.5 0.8 uncharacterized protein compare
ECD_03004 +0.5 2.3 tagatose 6-phosphate aldolase 1, kbaY subunit compare
ECD_01770 +0.5 1.0 D-malate oxidase, NAD-dependent; putative tartrate dehydrogenase compare
ECD_00151 +0.5 2.6 iron(3+)-hydroxamate import ABC transporter periplasmic binding protein compare
ECD_02168 +0.5 2.2 anaerobic sn-glycerol-3-phosphate dehydrogenase membrane anchor subunit compare
ECD_02071 +0.5 2.2 LrgB family inner membrane protein compare
ECD_00156 +0.5 1.4 UPF0126 family inner membrane protein compare
ECD_02129 +0.5 1.6 quinol dehydrogenase, electron source for NapAB compare
ECD_03045 +0.5 2.1 RNA binding protein conserved
ECD_03026 +0.5 2.5 U32 peptidase family protein compare
ECD_01952 +0.5 2.3 putative colanic acid exporter compare
ECD_00420 +0.5 0.8 adenine phosphoribosyltransferase compare
ECD_01291 +0.5 1.9 putative TIM alpha/beta barrel enzyme compare
ECD_01399 +0.5 1.0 putative ABC transporter permease compare
ECD_02349 +0.5 1.2 phosphate acetyltransferase compare
ECD_01649 +0.5 1.1 cysteine desulfurase, stimulated by SufE; selenocysteine lyase, PLP-dependent compare
ECD_02770 +0.5 1.5 uncharacterized protein compare
ECD_03001 +0.5 1.2 putative phosphotransferase system enzyme subunit (N-acetyl-galactosamine/galactosamine PTS system enzyme IIA component) compare
ECD_03999 +0.5 0.9 antitoxin of GhoTS toxin-antitoxin pair; endonuclease for ghoT mRNA compare
ECD_00592 +0.5 1.3 phospholipid:lipid A palmitoyltransferase compare
ECD_03013 +0.5 1.9 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent compare
ECD_02873 +0.5 1.7 hydrogenase 2, small subunit compare
ECD_00967 +0.5 1.4 methylglyoxal synthase compare
ECD_02816 +0.5 3.0 KpsD protein compare
ECD_03295 +0.5 1.7 stable heat shock chaperone compare
ECD_00481 +0.5 0.8 putative periplasmic pilus chaperone compare
ECD_01014 +0.5 0.9 ureidoacrylate amidohydrolase compare
ECD_03033 +0.5 3.2 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase compare
ECD_02350 +0.4 1.2 cobalamin adenosyltransferase involved in ethanolamine utilization compare
ECD_00281 +0.4 1.7 uncharacterized protein compare
ECD_02367 +0.4 2.2 putative neutral zinc metallopeptidase compare
ECD_02057 +0.4 0.9 putative membrane protein compare
ECD_00864 +0.4 1.1 23S rRNA m(5)U747 methyltransferase, SAM-dependent compare
ECD_01822 +0.4 1.8 6-phosphogluconate dehydratase compare
ECD_00026 +0.4 1.7 hypothetical protein compare
ECD_02112 +0.4 2.1 bicyclomycin/cysteine/sulfonamide efflux transporter compare
ECD_00616 +0.4 1.2 Hsp70 family chaperone Hsc62; RpoD-binding transcription inhibitor compare
ECD_00994 +0.4 0.8 putative phosphatidylethanolamine synthesis regulator compare
ECD_03088 +0.4 2.4 ClpXP protease specificity enhancing factor compare
ECD_04373 +0.4 1.4 UV-inducible membrane toxin, DinQ-AgrB type I toxin-antitoxin system compare
ECD_00388 +0.4 2.0 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases compare
ECD_01571 +0.4 1.2 pyridine nucleotide transhydrogenase, beta subunit compare
ECD_02899 +0.4 0.7 inner membrane protein compare
ECD_02798 +0.4 1.4 hypothetical protein compare
ECD_03935 +0.4 2.1 redox-sensitive transcriptional activator of soxS; autorepressor compare
ECD_01630 +0.4 1.2 LysR family putative transcriptional regulator compare
ECD_02920 +0.4 1.1 DUF1449 family inner membrane protein compare
ECD_03355 +0.4 0.5 Putative LuxR family repressor for dicarboxylate transport compare
ECD_04251 +0.4 1.2 salt-inducible putative ABC transporter periplasmic binding protein compare
ECD_03017 +0.4 0.7 outer membrane lipoprotein compare
ECD_02333 +0.4 1.0 inner membrane protein compare
ECD_02838 +0.4 2.9 putative type II secretion protein GspD compare
ECD_00218 +0.4 1.7 type 2 glutamine amidotransferase family protein compare
ECD_02918 +0.4 1.0 fimbrial protein compare
ECD_03932 +0.4 1.7 putative inner membrane protein compare
ECD_02494 +0.4 2.0 OM lipoprotein putative positive effector of YfiN activity compare
ECD_00020 +0.4 1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in phage experiments

For phage MOI 10 across organisms