Experiment set7S159 for Escherichia coli ECOR27

Compare to:

K9

Group: phage
Media: LB_plus_SM_buffer + Phage (10 MOI)
Culturing: Ecoli_ECOR27_ML1, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 12/11/2025
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride

Specific Phenotypes

For 30 genes in this experiment

For phage Phage in Escherichia coli ECOR27

For phage Phage across organisms

SEED Subsystems

Subsystem #Specific
Deoxyribose and Deoxynucleoside Catabolism 2
Glycerol and Glycerol-3-phosphate Uptake and Utilization 2
Orphan regulatory proteins 2
Choline and Betaine Uptake and Betaine Biosynthesis 1
CytR regulation 1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
MLST 1
RNA processing and degradation, bacterial 1
cAMP signaling in bacteria 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
cellulose biosynthesis 1 1 1
polyphosphate metabolism 2 2 1
2-deoxy-D-ribose degradation I 3 3 1
2-deoxy-α-D-ribose 1-phosphate degradation 3 3 1
glycerol degradation I 3 3 1
dTDP-N-acetylthomosamine biosynthesis 4 4 1
glycerol and glycerophosphodiester degradation 4 4 1
tRNA processing 10 10 2
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I 5 4 1
ppGpp metabolism 6 6 1
superpathway of pyrimidine deoxyribonucleosides degradation 6 6 1
polymyxin resistance 6 5 1
superpathway of purine deoxyribonucleosides degradation 7 7 1
superpathway of tetrahydrofolate biosynthesis 10 9 1
superpathway of enterobacterial common antigen biosynthesis 10 9 1
superpathway of tetrahydrofolate biosynthesis and salvage 12 11 1
peptidoglycan maturation (meso-diaminopimelate containing) 12 6 1
superpathway of dTDP-glucose-derived O-antigen building blocks biosynthesis 19 5 1
superpathway of chorismate metabolism 59 54 1