Experiment set7IT086 for Escherichia coli BW25113

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Sodium Acetate carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
b4015 aceA -4.5 -9.2 isocitrate lyase (NCBI) compare
b1702 pps -4.2 -11.1 phosphoenolpyruvate synthase (NCBI) compare
b0390 aroM -3.2 -10.3 hypothetical protein (NCBI) compare
b4014 aceB -2.3 -6.3 malate synthase (NCBI) compare
b2463 maeB -2.3 -6.7 malic enzyme (NCBI) compare
b2410 yfeH -2.1 -5.7 predicted inner membrane protein (NCBI) compare
b2790 yqcA -1.7 -5.4 flavodoxin (NCBI) compare
b3779 gpp -1.7 -10.4 guanosine pentaphosphatase/exopolyphosphatase (NCBI) compare
b4396 rob -1.7 -6.7 DNA-binding transcriptional activator (NCBI) compare
b3460 livJ -1.4 -7.4 leucine/isoleucine/valine transporter subunit (NCBI) compare
b4217 ytfK +1.1 5.5 orf, hypothetical protein (VIMSS) compare
b4016 aceK +1.2 8.8 bifunctional isocitrate dehydrogenase kinase/phosphatase protein (NCBI) compare
b4484 cpxP +1.3 6.7 periplasmic protein combats stress (NCBI) compare
b3146 yraL +1.4 10.1 predicted methyltransferase (NCBI) compare
b3516 gadX +1.4 12.2 DNA-binding transcriptional dual regulator (NCBI) compare
b3512 GadE +1.4 8.9 acid-responsive regulator of gadA and gadBC (Katherine Huang) compare
b2101 yegW +1.4 8.5 predicted DNA-binding transcriptional regulator (NCBI) compare
b0388 aroL +1.5 8.0 shikimate kinase II (NCBI) compare
b4141 yjeH +1.5 12.7 predicted transporter (NCBI) compare
b1422 ydcI +1.6 10.8 putative transcriptional regulator LYSR-type (VIMSS) compare
b1784 yeaH +1.6 12.6 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
b1783 yeaG +1.7 12.0 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
b3131 agaR +1.7 9.0 DNA-binding transcriptional dual regulator (NCBI) compare
b1191 b1191 +1.8 8.2 orf, hypothetical protein (VIMSS) compare
b1188 ycgB +1.9 10.3 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
b3752 rbsK +4.1 11.4 ribokinase (NCBI) compare
b0382 yaiB +6.1 54.6 hypothetical protein (NCBI) compare


Specific phenotypes for carbon source Sodium acetate across organisms