| | gene | name | fitness | t score | description | |
|---|
| b1830 | prc | -6.6 | -4.6 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b4242 | mgtA | -6.0 | -17.2 | magnesium transporter (NCBI) | compare |
| b0222 | lpcA | -5.9 | -4.1 | phosphoheptose isomerase (NCBI) | compare |
| b1129 | phoQ | -5.9 | -9.9 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b1130 | phoP | -5.9 | -9.6 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b0957 | ompA | -5.5 | -4.6 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b3026 | qseC | -5.3 | -6.3 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b0145 | dksA | -5.0 | -3.4 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b2114 | metG | -4.9 | -1.8 | methionyl-tRNA synthetase (NCBI) | compare |
| b0463 | acrA | -4.9 | -10.9 | multidrug efflux system (NCBI) | compare |
| b1192 | ldcA | -4.7 | -6.2 | L,D-carboxypeptidase A (NCBI) | compare |
| b3630 | rfaP | -4.6 | -19.8 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b3631 | rfaG | -4.6 | -23.3 | glucosyltransferase I (NCBI) | compare |
| b0053 | surA | -4.5 | -3.1 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b3621 | rfaC | -4.5 | -9.6 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b3035 | tolC | -4.5 | -11.9 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b3741 | gidA | -4.5 | -8.6 | glucose-inhibited division protein A (NCBI) | compare |
| b3620 | rfaF | -4.5 | -9.5 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b3229 | sspA | -4.4 | -6.7 | stringent starvation protein A (NCBI) | compare |
| b0088 | murD | -4.3 | -2.9 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b1236 | galU | -4.3 | -9.1 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b0200 | gmhB | -4.2 | -2.9 | hypothetical protein (NCBI) | compare |
| b3619 | rfaD | -4.2 | -6.9 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b3842 | rfaH | -4.2 | -8.8 | transcriptional activator RfaH (NCBI) | compare |
| b0740 | tolB | -4.0 | -7.9 | translocation protein TolB precursor (NCBI) | compare |
| b0462 | acrB | -4.0 | -15.1 | multidrug efflux system protein (NCBI) | compare |
| b0051 | ksgA | -3.7 | -9.6 | dimethyladenosine transferase (NCBI) | compare |
| b3706 | trmE | -3.7 | -9.5 | tRNA modification GTPase (NCBI) | compare |
| b3863 | polA | -3.6 | -2.3 | DNA polymerase I (NCBI) | compare |
| b0232 | yafN | -3.6 | -1.3 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b3725 | pstB | -3.6 | -2.4 | phosphate transporter subunit (NCBI) | compare |
| b3261 | fis | -3.5 | -6.2 | DNA-binding protein Fis (NCBI) | compare |
| b1677 | lpp | -3.4 | -2.2 | murein lipoprotein (NCBI) | compare |
| b3405 | ompR | -3.4 | -7.0 | osmolarity response regulator (NCBI) | compare |
| b4481 | rffT | -3.4 | -8.0 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b0720 | gltA | -3.4 | -5.7 | citrate synthase (NCBI) | compare |
| b0737 | tolQ | -3.3 | -5.7 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b2528 | iscA | -3.3 | -2.4 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b3839 | tatC | -3.3 | -8.4 | TatABCE protein translocation system subunit (NCBI) | compare |
| b0738 | tolR | -3.3 | -5.7 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b4702 | mgtL | -3.2 | -3.2 | regulatory leader peptide for mgtA (NCBI) | compare |
| b2512 | yfgL | -3.2 | -5.0 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b0739 | tolA | -3.2 | -7.2 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b3052 | rfaE | -3.1 | -6.2 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3463 | ftsE | -2.9 | -6.3 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b4171 | miaA | -2.9 | -5.2 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b3462 | ftsX | -2.8 | -7.1 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2051 | wcaH | -2.7 | -2.0 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b4451 | ryhB | -2.7 | -1.4 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b2281 | nuoI | -2.7 | -3.6 | NADH dehydrogenase subunit I (NCBI) | compare |
| b3163 | nlpI | -2.6 | -4.6 | hypothetical protein (NCBI) | compare |
| b0726 | sucA | -2.6 | -4.9 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b3236 | mdh | -2.5 | -6.7 | malate dehydrogenase (NCBI) | compare |
| b4676 | yoaK | -2.4 | -1.7 | expressed protein (RefSeq) | compare |
| b3728 | pstS | -2.4 | -5.6 | phosphate transporter subunit (NCBI) | compare |
| b3613 | yibP | -2.3 | -6.1 | putative membrane protein (VIMSS) | compare |
| b0741 | pal | -2.2 | -3.8 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b0142 | folK | -2.2 | -1.0 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b0688 | pgm | -2.1 | -4.4 | phosphoglucomutase (NCBI) | compare |
| b3632 | rfaQ | -2.1 | -13.6 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2567 | rnc | -2.1 | -1.9 | ribonuclease III (NCBI) | compare |
| b3194 | yrbE | -2.1 | -7.4 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3500 | gor | -2.0 | -2.1 | glutathione reductase (NCBI) | compare |
| b2276 | nuoN | -2.0 | -4.5 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b2215 | ompC | -2.0 | -6.4 | outer membrane porin protein C (NCBI) | compare |
| b3627 | rfaI | -1.9 | -9.4 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b4577 | sgrS | -1.9 | -1.9 | small antisense RNA (NCBI) | compare |
| b4695 | ykgT | -1.9 | -1.8 | no description | compare |
| b1860 | ruvB | -1.8 | -2.3 | Holliday junction DNA helicase B (NCBI) | compare |
| b3164 | pnp | -1.8 | -3.0 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b1150 | ymfR | -1.8 | -1.1 | e14 prophage; predicted protein (NCBI) | compare |
| b3628 | rfaB | -1.8 | -9.3 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b3784 | rfe | -1.8 | -8.9 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b2953 | yggU | -1.7 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b4172 | hfq | -1.7 | -1.8 | RNA-binding protein Hfq (NCBI) | compare |
| b0118 | acnB | -1.7 | -3.5 | aconitate hydratase (NCBI) | compare |
| b1361 | ydaW | -1.7 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2284 | nuoF | -1.6 | -3.8 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b3791 | rffA | -1.6 | -5.2 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b2330 | yfcB | -1.6 | -2.1 | putative adenine-specific methylase (VIMSS) | compare |
| b1604 | ydgH | -1.6 | -5.6 | hypothetical protein (NCBI) | compare |
| b3192 | yrbC | -1.6 | -4.9 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b3107 | yhaL | -1.6 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b3786 | rffE | -1.6 | -7.2 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b3195 | yrbF | -1.5 | -6.9 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b4220 | ytfM | -1.5 | -6.6 | predicted outer membrane protein and surface antigen (NCBI) | compare |
| b3193 | yrbD | -1.5 | -7.5 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b3404 | envZ | -1.5 | -5.0 | osmolarity sensor protein (NCBI) | compare |
| b2830 | nudH | -1.5 | -1.4 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b2017 | yefM | -1.5 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4453 | ldrD | -1.5 | -1.6 | toxic polypeptide, small (NCBI) | compare |
| b2617 | smpA | -1.4 | -2.3 | small membrane protein A (VIMSS) | compare |
| b1252 | tonB | -1.4 | -3.2 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b1480 | sra | -1.4 | -1.6 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b3787 | rffD | -1.4 | -5.7 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b3790 | rffC | -1.4 | -3.4 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b3191 | yrbB | -1.4 | -5.6 | orf, hypothetical protein (VIMSS) | compare |
| b1380 | ldhA | -1.4 | -1.7 | D-lactate dehydrogenase (NCBI) | compare |
| b3769 | ilvM | -1.4 | -2.4 | acetolactate synthase II, small subunit (NCBI) | compare |
| b4568 | ytjA | -1.4 | -1.5 | predicted protein (RefSeq) | compare |
| b0114 | aceE | -1.4 | -2.1 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b4535 | yniD | -1.3 | -2.6 | predicted protein (RefSeq) | compare |
| b2346 | vacJ | -1.3 | -4.5 | predicted lipoprotein (NCBI) | compare |
| b3811 | xerC | -1.3 | -2.1 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b1486 | ddpB | -1.3 | -2.5 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b1591 | b1591 | -1.3 | -1.7 | putative oxidoreductase component (VIMSS) | compare |
| b2280 | nuoJ | -1.3 | -2.7 | NADH dehydrogenase subunit J (NCBI) | compare |
| b1281 | pyrF | -1.3 | -2.4 | orotidine 5'-phosphate decarboxylase (NCBI) | compare |
| b4394 | yjjX | -1.3 | -1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4155 | yjeA | -1.3 | -1.5 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b1827 | kdgR | -1.2 | -1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0178 | hlpA | -1.2 | -2.5 | periplasmic chaperone (NCBI) | compare |
| b4509 | ylcG | -1.2 | -1.6 | DLP12 prophage; predicted protein (NCBI) | compare |
| b2283 | nuoG | -1.2 | -4.6 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b4221 | ytfN | -1.2 | -7.7 | hypothetical protein (NCBI) | compare |
| b2279 | nuoK | -1.2 | -1.4 | NADH dehydrogenase subunit K (NCBI) | compare |
| b3625 | rfaY | -1.2 | -5.5 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1085 | b1085 | -1.2 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1551 | b1551 | -1.2 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b0161 | degP | -1.2 | -4.2 | serine endoprotease (protease Do), membrane-associated (NCBI) | compare |
| b1639 | ydhA | -1.2 | -3.8 | orf, hypothetical protein (VIMSS) | compare |
| b4570 | lomR | -1.2 | -1.9 | no description | compare |
| b2071 | yegJ | -1.2 | -2.8 | hypothetical protein (NCBI) | compare |
| b0502 | ylbG | -1.1 | -1.1 | no description | compare |
| b1709 | btuD | -1.1 | -1.2 | vitamin B12-transporter ATPase (NCBI) | compare |
| b3727 | pstC | -1.1 | -4.0 | phosphate transporter subunit (NCBI) | compare |
| b3442 | yhhZ | -1.1 | -2.3 | hypothetical protein (NCBI) | compare |
| b4458 | oxyS | -1.1 | -0.8 | global regulatory RNA (NCBI) | compare |
| b2282 | nuoH | -1.1 | -1.5 | NADH dehydrogenase subunit H (NCBI) | compare |
| b4651 | yibW | -1.1 | -1.0 | no description | compare |
| b3250 | mreC | -1.1 | -0.9 | cell wall structural complex MreBCD transmembrane component MreC (NCBI) | compare |
| b0471 | ybaB | -1.1 | -1.8 | hypothetical protein (NCBI) | compare |
| b2620 | smpB | -1.1 | -1.2 | SsrA-binding protein (NCBI) | compare |
| b2572 | rseA | -1.1 | -3.4 | anti-sigma factor (NCBI) | compare |
| b1954 | dsrA | -1.1 | -1.2 | regulatory antisense RNA (NCBI) | compare |
| b3388 | damX | -1.1 | -7.0 | hypothetical protein (NCBI) | compare |
| b1286 | rnb | -1.1 | -1.9 | exoribonuclease II (NCBI) | compare |
| b2055 | wcaE | -1.1 | -2.4 | predicted glycosyl transferase (NCBI) | compare |
| b3121 | yhaC | -1.0 | -1.2 | hypothetical protein (NCBI) | compare |
| b0890 | ftsK | -1.0 | -4.3 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b1176 | minC | -1.0 | -3.1 | septum formation inhibitor (NCBI) | compare |
| b1861 | ruvA | -1.0 | -1.2 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b3082 | ygjM | -1.0 | -1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0998 | torD | -1.0 | -0.9 | chaperone protein TorD (NCBI) | compare |
| b2432 | yfeY | -1.0 | -2.0 | hypothetical protein (NCBI) | compare |
| b4480 | hdfR | -1.0 | -2.3 | transcriptional regulator HdfR (NCBI) | compare |
| b4552 | yrhC | -1.0 | -1.2 | no description | compare |
| b2110 | yehC | -1.0 | -2.0 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b3794 | rffM | -1.0 | -4.3 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b0632 | dacA | -1.0 | -3.1 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b4647 | mokA | -1.0 | -0.8 | no description | compare |
| b0549 | ybcO | -1.0 | -1.3 | DLP12 prophage; predicted protein (NCBI) | compare |
| b4533 | ynfO | -1.0 | -1.6 | Qin prophage; predicted protein (NCBI) | compare |
| b1865 | nudB | -1.0 | -1.1 | dATP pyrophosphohydrolase (NCBI) | compare |
| b2809 | b2809 | -0.9 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1726 | yniB | -0.9 | -1.4 | predicted inner membrane protein (NCBI) | compare |
| b1001 | yccE | -0.9 | -1.6 | hypothetical protein (NCBI) | compare |
| b2297 | pta | -0.9 | -1.1 | phosphate acetyltransferase (NCBI) | compare |
| b0436 | tig | -0.9 | -3.2 | trigger factor (NCBI) | compare |
| b1347 | ydaC | -0.9 | -1.5 | Rac prophage; predicted protein (NCBI) | compare |
| b2829 | ptsP | -0.9 | -5.1 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b2258 | b2258 | -0.9 | -0.9 | putative transport/receptor protein (VIMSS) | compare |
| b4642 | yoeD | -0.9 | -1.1 | no description | compare |
| b4438 | cyaR | -0.9 | -1.4 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b3545 | proK | -0.9 | -1.3 | tRNA-Pro (NCBI) | compare |
| b2318 | truA | -0.9 | -1.6 | tRNA pseudouridine synthase A (NCBI) | compare |
| b3649 | rpoZ | -0.9 | -1.1 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b2672 | ygaM | -0.9 | -2.7 | orf, hypothetical protein (VIMSS) | compare |
| b3029 | ygiN | -0.9 | -1.2 | quinol monooxygenase (NCBI) | compare |
| b1165 | ymgA | -0.9 | -2.8 | hypothetical protein (NCBI) | compare |
| b1642 | slyA | -0.9 | -1.1 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b2003 | yeeT | -0.9 | -1.6 | CP4-44 prophage; predicted protein (NCBI) | compare |
| b1282 | yciH | -0.9 | -2.4 | orf, hypothetical protein (VIMSS) | compare |
| b3068 | ygjF | -0.8 | -2.6 | G/U mismatch-specific DNA glycosylase (NCBI) | compare |
| b2814 | metZ | -0.8 | -0.9 | tRNA-Met (NCBI) | compare |
| b2168 | fruK | -0.8 | -1.4 | 1-phosphofructokinase (NCBI) | compare |
| b3609 | secB | -0.8 | -2.2 | export protein SecB (NCBI) | compare |
| b2516 | yfgA | -0.8 | -2.8 | hypothetical protein (NCBI) | compare |
| b1070 | flgN | -0.8 | -0.7 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b0234 | yafP | -0.8 | -3.2 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b1383 | ydbL | -0.8 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b2124 | yehS | -0.8 | -1.8 | hypothetical protein (NCBI) | compare |
| b3398 | yrfF | -0.8 | -1.4 | predicted inner membrane protein (NCBI) | compare |
| b1159 | mcrA | -0.8 | -1.8 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b0033 | carB | -0.8 | -4.7 | carbamoyl-phosphate synthase large subunit (NCBI) | compare |
| b3889 | yiiE | -0.8 | -2.2 | predicted transcriptional regulator (RefSeq) | compare |
| b0685 | ybfE | -0.8 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b4414 | tff | -0.8 | -1.9 | unknown RNA (NCBI) | compare |
| b0616 | citE | -0.8 | -2.2 | citrate lyase beta chain (acyl lyase subunit) (VIMSS) | compare |
| b4071 | nrfB | -0.8 | -3.2 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b0705 | ybfL | -0.8 | -1.8 | putative receptor protein (VIMSS) | compare |
| b3755 | yieP | -0.8 | -3.0 | predicted transcriptional regulator (NCBI) | compare |
| b1326 | mpaA | -0.8 | -2.0 | murein peptide amidase A (RefSeq) | compare |
| b4246 | pyrL | -0.8 | -1.2 | pyrBI operon leader peptide (NCBI) | compare |
| b0627 | tatE | -0.8 | -0.7 | twin arginine translocase protein E (NCBI) | compare |
| b4544 | yfbW | -0.8 | -1.7 | hypothetical protein (NCBI) | compare |
| b4675 | yoaJ | -0.8 | -1.4 | expressed protein (RefSeq) | compare |
| b0851 | nfsA | -0.7 | -1.7 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b0001 | thrL | -0.7 | -0.5 | thr operon leader peptide (NCBI) | compare |
| b3472 | b3472 | -0.7 | -3.7 | orf, hypothetical protein (VIMSS) | compare |