Experiment set7IT061 for Pseudomonas putida KT2440

Compare to:

DL-2-Aminoadipic acid 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PP_1985 -5.7 -6.7 3-isopropylmalate dehydratase large subunit compare
PP_0184 -5.7 -5.5 Argininosuccinate lyase compare
PP_1988 -5.7 -10.9 3-isopropylmalate dehydrogenase compare
PP_4724 -5.5 -6.5 Carbamoyl-phosphate synthase small chain compare
PP_4909 -5.5 -9.1 phosphoserine phosphatase compare
PP_4723 -5.4 -10.9 Carbamoyl-phosphate synthase large chain compare
PP_4678 -5.2 -17.7 Ketol-acid reductoisomerase compare
PP_0417 -5.2 -22.1 Anthranilate synthase component 1 compare
PP_0691 -4.8 -6.6 Glutamate 5-kinase compare
PP_1986 -4.8 -5.6 3-isopropylmalate dehydratase small subunit compare
PP_4679 -4.8 -9.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0083 -4.7 -7.1 tryptophan synthase beta chain compare
PP_0967 -4.6 -13.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -4.6 -17.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5014 -4.6 -4.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_1995 -4.6 -12.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0966 -4.5 -14.6 Histidinol dehydrogenase compare
PP_0421 -4.5 -8.5 Anthranilate phosphoribosyltransferase compare
PP_1088 -4.5 -12.2 Argininosuccinate synthase compare
PP_4890 -4.5 -8.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_0290 -4.4 -11.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0356 -4.4 -11.8 malate synthase G compare
PP_3511 -4.4 -10.3 Branched-chain-amino-acid aminotransferase compare
PP_0422 -4.3 -5.2 Indole-3-glycerol phosphate synthase compare
PP_5185 -4.3 -8.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0082 -4.3 -7.6 tryptophan synthase alpha chain compare
PP_5128 -4.2 -8.6 Dihydroxy-acid dehydratase compare
PP_4999 -4.1 -2.8 dihydroorotase-like protein compare
PP_4099 -4.1 -30.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 -4.0 -29.4 Sensor protein GacS compare
PP_0289 -3.9 -8.6 Imidazoleglycerol-phosphate dehydratase compare
PP_4994 -3.7 -7.5 conserved protein of unknown function compare
PP_0965 -3.7 -13.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0292 -3.7 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0293 -3.6 -3.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4004 -3.5 -5.8 DNA translocase FtsK compare
PP_1109 -3.5 -14.7 Transcriptional regulator, GntR family compare
PP_5289 -3.5 -5.8 Acetylglutamate kinase compare
PP_5098 -3.5 -9.5 methionine biosynthesis protein MetW compare
PP_1110 -3.4 -3.0 serine acetyltransferase compare
PP_1734 -3.3 -3.2 Probable septum site-determining protein MinC compare
PP_5097 -3.3 -14.2 homoserine O-acetyltransferase compare
PP_1079 -3.3 -6.1 Ornithine carbamoyltransferase compare
PP_0127 -3.2 -9.7 Thiol:disulfide interchange protein compare
PP_2001 -3.2 -9.2 O-succinylhomoserine sulfhydrylase compare
PP_2433 -3.0 -3.2 conserved protein of unknown function compare
PP_1111 -3.0 -8.3 putative Synthetase compare
PP_0856 -2.9 -4.4 conserved lipoprotein of unknown function compare
PP_1231 -2.9 -7.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5155 -2.9 -3.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0420 -2.9 -10.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4799 -2.8 -3.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0787 -2.7 -5.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4487 -2.6 -19.3 acetyl-CoA synthetase compare
PP_4804 -2.6 -5.0 RlpA-like lipoprotein compare
PP_1898 -2.6 -4.6 MotA/TolQ/ExbB proton channel family protein compare
PP_3839 -2.5 -10.9 short-chain alcohol dehydrogenase compare
PP_5015 -2.4 -7.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4116 -2.3 -11.3 isocitrate lyase compare
PP_1764 -2.3 -8.9 Phosphoglycolate phosphatase 2 compare
PP_4693 -2.2 -5.5 RNA polymerase-binding transcription factor DksA compare
PP_0435 -2.2 -15.0 Peptidase, M23/M37 family compare
PP_1224 -2.2 -7.2 periplasmic subunit of the TolQRA transport system compare
PP_1733 -2.1 -4.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_2145 -2.1 -6.9 beta-N-acetylglucosaminidase compare
PP_1025 -2.1 -6.3 2-isopropylmalate synthase compare
PP_4126 -2.1 -2.6 NADH-quinone oxidoreductase subunit I compare
PP_0406 -2.1 -6.7 Nucleotidyltransferase family protein compare
PP_0735 -2.1 -2.2 molybdopterin-synthase adenylyltransferase compare
PP_1216 -2.1 -3.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1217 -2.0 -4.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1215 -2.0 -1.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_5659 -2.0 -5.8 protein of unknown function compare
PP_0789 -1.9 -8.1 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4058 -1.9 -11.2 1,4-alpha-glucan branching enzyme compare
PP_1656 -1.9 -9.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_2402 -1.8 -3.6 putative Sensor histidine kinase compare
PP_1233 -1.8 -6.8 sulfurtransferase compare
PP_4964 -1.8 -4.5 D-erythrose 4-phosphate dehydrogenase compare
PP_5145 -1.8 -15.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5104 -1.7 -8.0 thiazole synthase compare
PP_0405 -1.7 -13.6 conserved protein of unknown function compare
PP_4696 -1.7 -6.0 Nitrogen regulation protein NR(I) compare
PP_1355 -1.7 -12.6 Muropeptide permease AmpG compare
PP_0434 -1.7 -8.3 Anhydro-N-acetylmuramic acid kinase compare
PP_0902 -1.7 -11.1 integral membrane sensor signal transduction histidine kinase compare
PP_5217 -1.6 -13.7 Polyphosphate kinase compare
PP_1655 -1.6 -5.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4700 -1.6 -2.6 pantothenate synthetase compare
PP_2568 -1.6 -2.3 Ring-cleaving dioxygenase compare
PP_2356 -1.5 -8.9 putative Phytochrome family protein compare
PP_0120 -1.5 -7.6 putative zinc ABC transporter compare
PP_5053 -1.5 -7.5 Protein-export protein SecB compare
PP_1702 -1.5 -5.0 Recombination-associated protein RdgC compare
PP_1468 -1.5 -3.3 Tyrosine recombinase XerD compare
PP_1428 -1.5 -2.3 Sigma factor AlgU negative regulatory protein compare
PP_1728 -1.5 -8.7 conserved membrane protein of unknown function compare
PP_5095 -1.5 -2.1 pyrroline-5-carboxylate reductase compare
PP_4782 -1.5 -5.3 Phosphomethylpyrimidine kinase compare
PP_1430 -1.5 -7.6 putative periplasmic serine endoprotease DegP-like compare
PP_4936 -1.5 -6.2 O-antigen polymerase compare
PP_0901 -1.5 -8.3 DNA-binding response regulator compare
PP_1719 -1.4 -8.0 Tail-specific protease prc compare
PP_0117 -1.4 -4.7 Zn(2+) ABC transporter - permease subunit compare
PP_4121 -1.4 -4.4 NADH-quinone oxidoreductase subunit C/D compare
PP_0368 -1.3 -9.2 putative Acyl-CoA dehydrogenase compare
PP_4943 -1.3 -2.6 putative Glycosyl transferase compare
PP_4922 -1.3 -8.3 Phosphomethylpyrimidine synthase compare
PP_4493 -1.3 -9.5 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
PP_5309 -1.3 -2.7 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2371 -1.2 -6.0 Sulphite reductase hemoprotein, beta subunit compare
PP_5507 -1.2 -3.0 protein of unknown function compare
PP_4120 -1.2 -3.0 NADH-quinone oxidoreductase subunit B compare
PP_4482 -1.2 -4.4 Transcriptional regulator, AraC family compare
PP_0119 -1.2 -4.0 putative zinc uptake regulation protein ZUR compare
PP_4171 -1.2 -10.3 conserved exported protein of unknown function compare
PP_0118 -1.2 -5.5 zinc import ATP-binding protein compare
PP_3065 -1.2 -5.3 Pyocin R2_PP, tail formation compare
PP_0547 -1.2 -5.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1994 -1.1 -2.3 tRNA pseudouridine (38-40)synthase compare
PP_0340 -1.1 -8.3 Glutamate-ammonia-ligase adenylyltransferase compare
PP_3603 -1.1 -5.0 Transcriptional regulator, GntR family compare
PP_5639 -1.1 -4.5 conserved exported protein of unknown function compare
PP_2820 -1.1 -2.1 HTH-type transcriptional regulator nfxB compare
PP_1663 -1.1 -5.8 conserved exported protein of unknown function compare
PP_4129 -1.1 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2437 -1.1 -6.0 putative Acyl-CoA dehydrogenase compare
PP_4296 -1.1 -1.9 conserved exported protein of unknown function compare
PP_0291 -1.0 -2.5 conserved protein of unknown function compare
PP_4247 -1.0 -2.2 Exonuclease compare
PP_1076 -1.0 -4.0 aquaglyceroporin compare
PP_4130 -1.0 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1214 -1.0 -2.1 putative transcriptional regulatory protein compare
PP_0948 -1.0 -2.1 Phosphocarrier protein HPr compare
PP_3649 -1.0 -2.7 Transcriptional regulator, GntR family compare
PP_5322 -1.0 -4.9 putative metal ion transporter compare
PP_3730 -1.0 -2.8 Transcriptional regulatory protein AruR compare
PP_2354 -1.0 -6.8 Sensory box histidine kinase/response regulator compare
PP_2087 -1.0 -2.8 CmpX protein compare
PP_3409 -1.0 -2.0 putative Cobalamin biosynthesis protein cobE compare
PP_2889 -1.0 -3.7 putative Transmembrane regulator PrtR compare
PP_3248 -1.0 -2.5 Dyp-type peroxidase family protein compare
PP_1206 -1.0 -5.2 basic-amino-acid specific porin OprD compare
PP_0809 -1.0 -5.5 disulfide bond formation protein B compare
PP_4124 -1.0 -3.4 NADH-quinone oxidoreductase subunit G compare
PP_0852 -1.0 -3.3 Transcriptional regulator, Cro/CI family compare
PP_2302 -1.0 -4.0 DNA-binding, ATP-dependent protease compare
PP_2375 -0.9 -6.9 cobalamin-dependent methionine synthase compare
PP_4910 -0.9 -1.9 conserved protein of unknown function compare
PP_0513 -0.9 -1.8 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0959 -0.9 -2.2 phospholipid ABC transporter compare
PP_1075 -0.9 -6.1 glycerol kinase compare
PP_5230 -0.9 -2.4 Tyrosine recombinase XerC compare
PP_4940 -0.9 -5.0 Putative glycosyltransferase compare
PP_1328 -0.9 -2.5 Protein MraZ compare
PP_1232 -0.9 -5.4 conserved exported protein of unknown function compare
PP_2136 -0.9 -3.5 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4009 -0.9 -4.5 ATP-dependent Clp protease adapter protein ClpS compare
PP_3508 -0.9 -2.8 Protein CobW compare
PP_1294 -0.9 -2.8 molybdopterin synthase large subunit compare
PP_4223 -0.9 -1.1 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1941 -0.9 -3.8 conserved protein of unknown function compare
PP_0310 -0.9 -6.3 putative dimethylglycine dehydrogenase subunit compare
PP_4710 -0.9 -5.9 tRNA pseudouridine 55 synthase compare
PP_1629 -0.9 -3.3 Protein RecA compare
PP_1654 -0.9 -2.5 cysteine synthase B compare
PP_0138 -0.9 -4.5 conserved membrane protein of unknown function compare
PP_2088 -0.9 -2.2 RNA polymerase sigma factor SigX compare
PP_4173 -0.9 -4.8 Sensor histidine kinase/response regulator compare
PP_1678 -0.9 -2.8 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4172 -0.9 -4.2 conserved exported protein of unknown function compare
PP_1112 -0.9 -5.6 conserved membrane protein of unknown function compare
PP_0311 -0.8 -4.6 putative dimethylglycine dehydrogenase subunit compare
PP_1761 -0.8 -5.6 diguanylate cyclase with phosphodiesterase domain compare
PP_1669 -0.8 -5.5 NLP/P60 family protein compare
PP_1141 -0.8 -4.8 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_2315 -0.8 -5.6 Transcription elongation factor GreB compare
PP_1291 -0.8 -4.4 PhoH family protein compare
PP_0958 -0.8 -3.9 phospholipid ABC transporter ATP-binding subunit compare
PP_0313 -0.8 -1.9 putative electron transfer flavoprotein beta subunit compare
PP_0937 -0.8 -3.7 endoribonuclease G (RNAse G) compare
PP_0326 -0.8 -3.3 sarcosine oxidase subunit gamma compare
PP_1137 -0.8 -4.5 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_4131 -0.8 -3.4 NADH-quinone oxidoreductase subunit N compare
PP_2341 -0.8 -1.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4952 -0.8 -1.5 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1521 -0.8 -3.3 conserved protein of unknown function compare
PP_2032 -0.8 -3.0 putative ATPase compare
PP_1876 -0.8 -2.8 putative ATP/GTP-binding protein of the AAA+ family compare
PP_2389 -0.8 -3.2 conserved protein of unknown function compare
PP_5324 -0.8 -1.7 Response regulator compare
PP_1309 -0.8 -3.7 conserved exported protein of unknown function compare
PP_5260 -0.8 -3.9 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data) compare
PP_2137 -0.7 -1.2 beta-ketoadipyl CoA thiolase, beta component compare
PP_4977 -0.7 -5.0 5,10-methylenetetrahydrofolate reductase compare
PP_4150 -0.7 -3.3 microcin C transporter - ATP binding subunit compare
PP_4830 -0.7 -3.5 precorrin-6Y C(5,15)-methyltransferase compare
PP_4938 -0.7 -4.5 putative Glycosyl transferase compare
PP_3760 -0.7 -4.7 putative methyltransferase compare
PP_4147 -0.7 -4.7 microcin C transporter - periplasmic binding protein compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source DL-2-Aminoadipic acid in Pseudomonas putida KT2440

For carbon source DL-2-Aminoadipic acid across organisms