Experiment set7IT057 for Pseudomonas putida KT2440

Compare to:

5-Aminovaleric acid 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PP_3511 -6.3 -9.6 Branched-chain-amino-acid aminotransferase compare
PP_1995 -6.1 -5.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0293 -5.4 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -5.3 -4.4 3-isopropylmalate dehydratase small subunit compare
PP_5015 -5.1 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2370 -4.9 -4.7 conserved protein of unknown function compare
PP_0290 -4.7 -9.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1988 -4.7 -8.3 3-isopropylmalate dehydrogenase compare
PP_4680 -4.6 -16.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -4.5 -14.3 Ketol-acid reductoisomerase compare
PP_0082 -4.3 -6.6 tryptophan synthase alpha chain compare
PP_0967 -4.3 -11.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2910 -4.3 -7.2 L-2-hydroxyglutarate oxidase compare
PP_0083 -4.2 -8.1 tryptophan synthase beta chain compare
PP_4696 -4.1 -6.2 Nitrogen regulation protein NR(I) compare
PP_1231 -4.1 -8.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0213 -4.0 -6.8 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_4679 -4.0 -7.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0422 -3.9 -8.3 Indole-3-glycerol phosphate synthase compare
PP_1088 -3.9 -11.8 Argininosuccinate synthase compare
PP_5128 -3.8 -7.8 Dihydroxy-acid dehydratase compare
PP_0289 -3.8 -6.8 Imidazoleglycerol-phosphate dehydratase compare
PP_1079 -3.7 -6.3 Ornithine carbamoyltransferase compare
PP_5185 -3.7 -6.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0421 -3.7 -6.8 Anthranilate phosphoribosyltransferase compare
PP_1366 -3.7 -2.0 Transcriptional regulator MvaT, P16 subunit compare
PP_0966 -3.6 -10.9 Histidinol dehydrogenase compare
PP_0292 -3.5 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0417 -3.5 -14.7 Anthranilate synthase component 1 compare
PP_5097 -3.5 -11.9 homoserine O-acetyltransferase compare
PP_0214 -3.4 -8.7 4-aminobutyrate aminotransferase compare
PP_2371 -3.3 -5.5 Sulphite reductase hemoprotein, beta subunit compare
PP_2001 -3.3 -7.1 O-succinylhomoserine sulfhydrylase compare
PP_5098 -3.3 -7.0 methionine biosynthesis protein MetW compare
PP_4723 -3.3 -11.6 Carbamoyl-phosphate synthase large chain compare
PP_0184 -3.3 -7.0 Argininosuccinate lyase compare
PP_0965 -3.2 -8.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0420 -3.1 -8.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5014 -3.1 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_1985 -3.1 -4.4 3-isopropylmalate dehydratase large subunit compare
PP_4890 -3.0 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_3790 -2.9 -9.2 diaminopimelate epimerase compare
PP_4909 -2.9 -6.6 phosphoserine phosphatase compare
PP_4799 -2.9 -4.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5289 -2.8 -4.5 Acetylglutamate kinase compare
PP_4724 -2.7 -4.5 Carbamoyl-phosphate synthase small chain compare
PP_0833 -2.7 -2.6 queuine tRNA-ribosyltransferase compare
PP_1428 -2.6 -3.1 Sigma factor AlgU negative regulatory protein compare
PP_0001 -2.6 -3.0 probable chromosome-partitioning protein compare
PP_1025 -2.6 -9.2 2-isopropylmalate synthase compare
PP_0691 -2.5 -3.3 Glutamate 5-kinase compare
PP_4364 -2.4 -5.2 putative Anti-sigma F factor antagonist compare
PP_5155 -2.3 -3.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2909 -2.2 -7.3 glutarate hydroxylase (from data) compare
PP_5095 -2.2 -1.5 pyrroline-5-carboxylate reductase compare
PP_3999 -2.2 -7.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0127 -2.2 -2.8 Thiol:disulfide interchange protein compare
PP_4700 -2.2 -1.5 pantothenate synthetase compare
PP_4126 -2.1 -2.8 NADH-quinone oxidoreductase subunit I compare
PP_4131 -2.1 -6.5 NADH-quinone oxidoreductase subunit N compare
PP_4999 -2.0 -1.4 dihydroorotase-like protein compare
PP_4122 -1.9 -1.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2568 -1.9 -2.1 Ring-cleaving dioxygenase compare
PP_5337 -1.9 -5.1 LysR family transcriptional regulator compare
PP_0158 -1.9 -8.5 glutaryl-CoA dehydrogenase conserved
PP_0787 -1.9 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4693 -1.9 -5.2 RNA polymerase-binding transcription factor DksA compare
PP_1353 -1.9 -2.7 conserved membrane protein of unknown function compare
PP_0356 -1.8 -6.6 malate synthase G compare
PP_5217 -1.8 -10.1 Polyphosphate kinase compare
PP_0340 -1.7 -8.9 Glutamate-ammonia-ligase adenylyltransferase compare
PP_0164 -1.7 -6.7 conserved protein of unknown function compare
PP_3505 -1.7 -2.8 conserved protein of unknown function compare
PP_4058 -1.7 -6.7 1,4-alpha-glucan branching enzyme compare
PP_0291 -1.6 -1.9 conserved protein of unknown function compare
PP_1217 -1.6 -4.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4116 -1.6 -7.9 isocitrate lyase compare
PP_2136 -1.6 -4.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0157 -1.6 -8.8 transcriptional activator of gcdH, LysR family conserved
PP_5227 -1.6 -5.5 diaminopimelate decarboxylase compare
PP_3248 -1.5 -2.2 Dyp-type peroxidase family protein compare
PP_4120 -1.5 -3.4 NADH-quinone oxidoreductase subunit B compare
PP_0261 -1.5 -5.0 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1656 -1.4 -8.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_4130 -1.4 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4699 -1.4 -2.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1493 -1.4 -3.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0719 -1.4 -1.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5582 -1.4 -2.0 conserved protein of unknown function compare
PP_0368 -1.4 -6.2 putative Acyl-CoA dehydrogenase compare
PP_2168 -1.4 -6.1 Transaldolase compare
PP_2747 -1.4 -1.6 conserved protein of unknown function compare
PP_0159 -1.4 -8.8 putative CoA-transferase family III conserved
PP_1216 -1.4 -2.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4695 -1.3 -5.9 Sensory box histidine kinase compare
PP_5313 -1.3 -3.2 DNA-binding protein HU-alpha compare
PP_5001 -1.3 -2.8 protease HslVU, ATPase component compare
PP_1293 -1.3 -1.3 molybdopterin synthase small subunit compare
PP_1426 -1.3 -6.7 L-aspartate oxidase compare
PP_4094 -1.3 -2.9 conserved protein of unknown function compare
PP_5328 -1.3 -2.4 putative phosphate transport system permease protein compare
PP_0063 -1.3 -3.3 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4964 -1.3 -2.4 D-erythrose 4-phosphate dehydrogenase compare
PP_5639 -1.3 -5.5 conserved exported protein of unknown function compare
PP_1994 -1.3 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_5145 -1.3 -10.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4977 -1.2 -6.3 5,10-methylenetetrahydrofolate reductase compare
PP_5486 -1.2 -2.6 conserved protein of unknown function compare
PP_1664 -1.2 -3.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_2253 -1.2 -2.8 Transcriptional regulator, GntR family compare
PP_2088 -1.2 -2.7 RNA polymerase sigma factor SigX compare
PP_2327 -1.2 -3.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5338 -1.2 -2.2 aspartate ammonia-lyase compare
PP_1655 -1.2 -3.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2414 -1.2 -1.7 conserved exported protein of unknown function compare
PP_1764 -1.2 -4.6 Phosphoglycolate phosphatase 2 compare
PP_5348 -1.2 -5.5 Transcriptional regulator, LysR family compare
PP_2911 -1.1 -5.1 gamma-aminobutyrate permease compare
PP_0801 -1.1 -1.4 conserved exported protein of unknown function compare
PP_5346 -1.1 -5.5 pyruvate carboxylase subunit B compare
PP_4830 -1.1 -4.0 precorrin-6Y C(5,15)-methyltransferase compare
PP_0855 -1.1 -2.0 conserved protein of unknown function compare
PP_5594 -1.1 -1.8 conserved protein of unknown function compare
PP_0025 -1.1 -1.5 hypothetical protein compare
PP_2107 -1.1 -1.5 conserved protein of unknown function compare
PP_5659 -1.1 -3.4 protein of unknown function compare
PP_1733 -1.1 -2.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_4997 -1.0 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0022 -1.0 -1.2 hypothetical protein compare
PP_2375 -1.0 -6.3 cobalamin-dependent methionine synthase compare
PP_1734 -1.0 -2.1 Probable septum site-determining protein MinC compare
PP_5350 -1.0 -2.0 Transcriptional regulator, RpiR family compare
PP_4804 -1.0 -1.8 RlpA-like lipoprotein compare
PP_5329 -1.0 -2.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3152 -1.0 -4.4 putative DNA-binding transcriptional regulator, LysR-type compare
PP_2000 -1.0 -0.9 amidophosphoribosyl transferase compare
PP_2846 -1.0 -2.3 urease accessory protein compare
PP_2497 -1.0 -1.5 conserved protein of unknown function compare
PP_3064 -1.0 -2.3 Phage tail protein compare
PP_5327 -1.0 -2.9 putative phosphate ABC transporter, permease subunit compare
PP_2328 -0.9 -3.6 Phosphoadenosine phosphosulfate reductase compare
PP_0685 -0.9 -2.4 conserved protein of unknown function compare
PP_1109 -0.9 -5.9 Transcriptional regulator, GntR family compare
PP_0120 -0.9 -4.2 putative zinc ABC transporter compare
PP_5347 -0.9 -4.7 pyruvate carboxylase subunit A compare
PP_5610 -0.9 -1.4 protein of unknown function compare
PP_1609 -0.9 -2.2 conserved protein of unknown function compare
PP_4129 -0.9 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5191 -0.9 -2.5 conserved exported protein of unknown function compare
PP_3908 -0.9 -2.1 conserved protein of unknown function compare
PP_1871 -0.9 -2.7 Protease HtpX compare
PP_2090 -0.9 -2.5 Uroporphyrinogen-III C-methyltransferase compare
PP_1322 -0.9 -1.2 putative Lipoprotein compare
PP_1941 -0.9 -3.5 conserved protein of unknown function compare
PP_0510 -0.9 -3.6 Thioredoxin compare
PP_4989 -0.9 -1.7 Protein PilJ compare
PP_3649 -0.9 -2.4 Transcriptional regulator, GntR family compare
PP_0262 -0.9 -2.3 conserved protein of unknown function compare
PP_2080 -0.9 -6.1 NAD-specific glutamate dehydrogenase compare
PP_3508 -0.9 -2.2 Protein CobW compare
PP_1972 -0.9 -4.8 aromatic-amino-acid aminotransferase compare
PP_1677 -0.9 -2.7 Adenosyl-cobyric acid synthase compare
PP_3318 -0.9 -1.6 conserved protein of unknown function compare
PP_2976 -0.8 -1.5 putative transposase compare
PP_1233 -0.8 -2.7 sulfurtransferase compare
PP_1110 -0.8 -2.6 serine acetyltransferase compare
PP_1629 -0.8 -3.1 Protein RecA compare
PP_1468 -0.8 -2.2 Tyrosine recombinase XerD compare
PP_1145 -0.8 -3.8 RNA polymerase-associated protein RapA compare
PP_1679 -0.8 -1.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4168 -0.8 -2.6 conserved protein of unknown function compare
PP_5114 -0.8 -1.3 putative adenine methyltransferase compare
PP_1635 -0.8 -2.6 DNA-binding response regulator compare
PP_5146 -0.8 -3.3 RNA pyrophosphohydrolase compare
PP_4124 -0.8 -2.4 NADH-quinone oxidoreductase subunit G compare
PP_4940 -0.8 -4.3 Putative glycosyltransferase compare
PP_4961 -0.8 -1.4 putative Lipoprotein compare
PP_1681 -0.8 -4.2 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_5310 -0.8 -2.6 junction-specific ATP-dependent DNA helicase compare
PP_4482 -0.8 -1.7 Transcriptional regulator, AraC family compare
PP_0092 -0.8 -2.3 putative lipoprotein compare
PP_4008 -0.8 -3.1 ATP-dependent serine protease compare
PP_3151 -0.8 -4.9 NAD+-dependent succinate semialdehyde dehydrogenase compare
PP_5090 -0.8 -1.0 putative cell division protein compare
PP_4268 -0.8 -0.8 nucleoid-associated broad specificity regulator compare
PP_5094 -0.7 -1.4 putative enzyme with PLP binding domain compare
PP_3506 -0.7 -1.7 Magnesium chelatase, subunit ChII compare
PP_2337 -0.7 -1.5 aconitate isomerase compare
PP_3002 -0.7 -2.0 shikimate dehydrogenase-related enzyme compare
PP_1832 -0.7 -3.8 putative Oxidase compare
PP_4937 -0.7 -2.1 toluene tolerance protein compare
PP_5274 -0.7 -1.1 conserved protein of unknown function compare
PP_1628 -0.7 -2.5 NMN amidohydrolase compare
PP_0784 -0.7 -2.3 conserved protein of unknown function compare
PP_1255 -0.7 -2.4 putative cis-4-hydroxy-D-proline oxidase compare
PP_5035 -0.7 -2.8 Histidine utilization repressor compare
PP_3821 -0.7 -3.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3855 -0.7 -1.9 conserved protein of unknown function compare
PP_3806 -0.7 -1.8 Hydrolase, isochorismatase family compare
PP_1788 -0.7 -1.5 conserved protein of unknown function compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source 5-Aminovaleric acid in Pseudomonas putida KT2440

For carbon source 5-Aminovaleric acid across organisms