Experiment set7IT056 for Pseudomonas putida KT2440

Compare to:

D-Lysine 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PP_3591 -6.1 -4.2 Delta 1-piperideine-2-carboxylate reductase compare
PP_0653 -5.6 -1.8 conserved protein of unknown function compare
PP_1988 -5.6 -10.8 3-isopropylmalate dehydrogenase compare
PP_1995 -5.6 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0293 -5.4 -2.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4679 -5.3 -8.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3592 -5.2 -11.6 Transcriptional regulator, RpiR family compare
PP_3593 -5.1 -10.3 L-lysine and D-lysine ABC transporter, substrate-binding component (from data) compare
PP_3595 -5.0 -11.1 L-lysine and D-lysine ABC transporter, permease component 2 (from data) compare
PP_4680 -4.9 -14.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4493 -4.8 -14.2 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
PP_0083 -4.8 -8.0 tryptophan synthase beta chain compare
PP_3594 -4.7 -7.2 L-lysine and D-lysine ABC transporter, permease component 1 (from data) compare
PP_4678 -4.7 -15.4 Ketol-acid reductoisomerase compare
PP_4108 -4.6 -6.8 2-aminoadipate transaminase (EC 2.6.1.39) (from data) compare
PP_1088 -4.4 -12.1 Argininosuccinate synthase compare
PP_5258 -4.2 -7.9 L-piperidine-6-carboxylate dehydrogenase compare
PP_5014 -4.2 -4.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_4909 -4.1 -8.7 phosphoserine phosphatase compare
PP_1985 -4.0 -4.2 3-isopropylmalate dehydratase large subunit compare
PP_2001 -3.9 -7.8 O-succinylhomoserine sulfhydrylase compare
PP_2088 -3.9 -3.8 RNA polymerase sigma factor SigX compare
PP_0967 -3.9 -6.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4943 -3.9 -2.6 putative Glycosyl transferase compare
PP_3596 -3.9 -7.6 D-lysine oxidase compare
PP_0292 -3.8 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0691 -3.8 -2.6 Glutamate 5-kinase compare
PP_1986 -3.8 -4.3 3-isopropylmalate dehydratase small subunit compare
PP_5085 -3.8 -8.2 malic enzyme B compare
PP_0290 -3.7 -5.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3511 -3.7 -6.3 Branched-chain-amino-acid aminotransferase compare
PP_0417 -3.6 -13.4 Anthranilate synthase component 1 compare
PP_5260 -3.6 -6.1 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data) compare
PP_1216 -3.6 -3.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0184 -3.5 -6.0 Argininosuccinate lyase compare
PP_2371 -3.5 -6.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1428 -3.4 -2.4 Sigma factor AlgU negative regulatory protein compare
PP_3597 -3.4 -3.1 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_4126 -3.4 -2.3 NADH-quinone oxidoreductase subunit I compare
PP_5347 -3.4 -8.9 pyruvate carboxylase subunit A compare
PP_0422 -3.4 -3.7 Indole-3-glycerol phosphate synthase compare
PP_5097 -3.4 -9.9 homoserine O-acetyltransferase compare
PP_0421 -3.3 -6.5 Anthranilate phosphoribosyltransferase compare
PP_0787 -3.3 -3.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2370 -3.2 -3.2 conserved protein of unknown function compare
PP_0082 -3.2 -5.4 tryptophan synthase alpha chain compare
PP_1045 -3.2 -2.4 Type II secretion pathway protein XcpP compare
PP_0965 -3.1 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5257 -3.1 -7.7 L-pipecolate oxidase compare
PP_5289 -3.1 -5.0 Acetylglutamate kinase compare
PP_5185 -3.1 -5.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0966 -3.1 -7.6 Histidinol dehydrogenase compare
PP_1079 -3.0 -3.6 Ornithine carbamoyltransferase compare
PP_5338 -2.9 -2.0 aspartate ammonia-lyase compare
PP_4890 -2.9 -5.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_0289 -2.9 -5.7 Imidazoleglycerol-phosphate dehydratase compare
PP_4696 -2.8 -5.8 Nitrogen regulation protein NR(I) compare
PP_1110 -2.8 -3.4 serine acetyltransferase compare
PP_4723 -2.8 -9.1 Carbamoyl-phosphate synthase large chain compare
PP_0213 -2.8 -4.5 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_4695 -2.8 -10.2 Sensory box histidine kinase compare
PP_3999 -2.7 -8.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5128 -2.7 -5.6 Dihydroxy-acid dehydratase compare
PP_5346 -2.7 -5.7 pyruvate carboxylase subunit B compare
PP_2328 -2.7 -6.7 Phosphoadenosine phosphosulfate reductase compare
PP_1672 -2.6 -5.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1111 -2.6 -6.4 putative Synthetase compare
PP_5155 -2.5 -4.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1109 -2.5 -10.3 Transcriptional regulator, GntR family compare
PP_5098 -2.5 -4.9 methionine biosynthesis protein MetW compare
PP_2327 -2.4 -4.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4122 -2.4 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0420 -2.4 -6.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1025 -2.3 -8.2 2-isopropylmalate synthase compare
PP_0339 -2.3 -3.8 Pyruvate dehydrogenase E1 component compare
PP_4693 -2.2 -5.8 RNA polymerase-binding transcription factor DksA compare
PP_5095 -2.2 -1.3 pyrroline-5-carboxylate reductase compare
PP_2568 -2.1 -1.8 Ring-cleaving dioxygenase compare
PP_4532 -2.1 -2.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5348 -2.1 -6.0 Transcriptional regulator, LysR family compare
PP_1231 -2.1 -3.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4517 -2.1 -2.1 conserved protein of unknown function compare
PP_1994 -2.0 -2.7 tRNA pseudouridine (38-40)synthase compare
PP_4724 -2.0 -3.6 Carbamoyl-phosphate synthase small chain compare
PP_5015 -2.0 -4.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1076 -2.0 -4.2 aquaglyceroporin compare
PP_4364 -2.0 -3.4 putative Anti-sigma F factor antagonist compare
PP_4999 -2.0 -1.3 dihydroorotase-like protein compare
PP_4701 -1.9 -1.2 glucose-6-phosphate isomerase compare
PP_3902 -1.9 -2.5 conserved protein of unknown function compare
PP_0801 -1.8 -1.5 conserved exported protein of unknown function compare
PP_0719 -1.8 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2581 -1.8 -1.7 conserved protein of unknown function compare
PP_2087 -1.8 -3.2 CmpX protein compare
PP_1681 -1.8 -7.9 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_3365 -1.7 -1.5 Acetolactate synthase compare
PP_2414 -1.7 -1.4 conserved exported protein of unknown function compare
PP_4199 -1.7 -0.9 putative Lipoprotein compare
PP_1733 -1.7 -2.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_5337 -1.7 -3.9 LysR family transcriptional regulator compare
PP_1678 -1.6 -2.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4136 -1.6 -1.5 Transcriptional regulator, LuxR family compare
PP_5217 -1.6 -8.9 Polyphosphate kinase compare
PP_1734 -1.6 -3.3 Probable septum site-determining protein MinC compare
PP_1679 -1.6 -1.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2168 -1.6 -5.4 Transaldolase compare
PP_0937 -1.6 -3.1 endoribonuclease G (RNAse G) compare
PP_3539 -1.6 -2.2 putative Transcriptional regulator compare
PP_1439 -1.5 -1.9 conserved exported protein of unknown function compare
PP_0833 -1.5 -1.8 queuine tRNA-ribosyltransferase compare
PP_0291 -1.5 -1.5 conserved protein of unknown function compare
PP_4130 -1.5 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4124 -1.5 -3.8 NADH-quinone oxidoreductase subunit G compare
PP_3508 -1.4 -2.9 Protein CobW compare
PP_4827 -1.4 -6.3 Precorrin-2 C(20)-methyltransferase compare
PP_2442 -1.4 -1.9 conserved protein of unknown function, DUF480 family compare
PP_0383 -1.4 -4.7 Lysine 2-monooxygenase compare
PP_1677 -1.4 -4.2 Adenosyl-cobyric acid synthase compare
PP_0048 -1.4 -1.3 conserved protein of unknown function compare
PP_4129 -1.4 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3328 -1.4 -2.2 putative Ring-cleaving dioxygenase compare
PP_5191 -1.4 -3.5 conserved exported protein of unknown function compare
PP_5327 -1.3 -3.0 putative phosphate ABC transporter, permease subunit compare
PP_4700 -1.3 -2.1 pantothenate synthetase compare
PP_2121 -1.3 -1.9 putative Lipoprotein compare
PP_3580 -1.3 -1.3 conserved protein of unknown function compare
PP_4699 -1.3 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0758 -1.3 -2.9 conserved protein of unknown function compare
PP_4964 -1.3 -2.4 D-erythrose 4-phosphate dehydrogenase compare
PP_1637 -1.3 -2.5 Transcriptional regulator, LysR family compare
PP_2299 -1.3 -2.0 Trigger factor compare
PP_4494 -1.3 -4.0 putative LysR-type transcriptional activator protein compare
PP_0900 -1.2 -2.2 PAP2 family protein compare
PP_5639 -1.2 -4.9 conserved exported protein of unknown function compare
PP_3164 -1.2 -1.7 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_5552 -1.2 -2.2 conserved protein of unknown function compare
PP_0832 -1.2 -2.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2136 -1.2 -2.4 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5747 -1.2 -2.9 pyridine nucleotide transhydrogenase subunit alpha compare
PP_0959 -1.2 -1.6 phospholipid ABC transporter compare
PP_5658 -1.2 -1.6 protein of unknown function compare
PP_4993 -1.2 -2.7 Glutathione synthetase compare
PP_1654 -1.2 -2.0 cysteine synthase B compare
PP_3248 -1.2 -1.7 Dyp-type peroxidase family protein compare
PP_2820 -1.2 -1.8 HTH-type transcriptional regulator nfxB compare
PP_3730 -1.2 -1.1 Transcriptional regulatory protein AruR compare
PP_1690 -1.2 -2.3 conserved protein of unknown function compare
PP_2302 -1.2 -3.0 DNA-binding, ATP-dependent protease compare
PP_0775 -1.1 -1.7 conserved protein of unknown function compare
PP_1673 -1.1 -3.3 cobyrinate a,c-diamide synthase compare
PP_4121 -1.1 -3.8 NADH-quinone oxidoreductase subunit C/D compare
PP_3239 -1.1 -0.8 putative cointegrate resolution protein T Tn4652 compare
PP_0434 -1.1 -4.9 Anhydro-N-acetylmuramic acid kinase compare
PP_2723 -1.1 -2.1 Uncharacterized oxidoreductase YhdF compare
PP_4799 -1.1 -2.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1553 -1.1 -1.4 conserved protein of unknown function compare
PP_0156 -1.1 -4.4 pyridine nucleotide transhydrogenase subunit alpha compare
PP_5028 -1.1 -1.8 proline iminopeptidase compare
PP_0364 -1.1 -4.2 pimeloyl-[acp] methyl ester esterase compare
PP_0774 -1.1 -3.2 Phosphate acetyltransferase compare
PP_4875 -1.1 -2.9 conserved membrane protein of unknown function compare
PP_1826 -1.1 -0.9 Hydrolase, isochorismatase family compare
PP_1128 -1.1 -2.1 OmpA family protein compare
PP_4874 -1.1 -0.9 50S ribosomal protein L9 compare
PP_0382 -1.1 -4.5 5-aminopentanamidase compare
PP_4531 -1.1 -2.2 conserved exported protein of unknown function compare
PP_4804 -1.1 -1.8 RlpA-like lipoprotein compare
PP_2196 -1.0 -1.7 agmatinase compare
PP_5104 -1.0 -3.3 thiazole synthase compare
PP_5218 -1.0 -3.7 DedA family protein compare
PP_4880 -1.0 -5.0 exoribonuclease R compare
PP_3766 -1.0 -1.9 Lactoylglutathione lyase compare
PP_4782 -1.0 -2.2 Phosphomethylpyrimidine kinase compare
PP_4977 -1.0 -5.1 5,10-methylenetetrahydrofolate reductase compare
PP_2306 -1.0 -1.6 conserved exported protein of unknown function compare
PP_2475 -1.0 -2.7 Transcriptional regulator, TetR family compare
PP_3649 -1.0 -2.4 Transcriptional regulator, GntR family compare
PP_1941 -1.0 -3.0 conserved protein of unknown function compare
PP_1362 -1.0 -2.1 pyruvate kinase II compare
PP_0040 -1.0 -1.7 hypothetical protein compare
PP_0405 -1.0 -6.5 conserved protein of unknown function compare
PP_1676 -1.0 -2.6 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0435 -1.0 -5.5 Peptidase, M23/M37 family compare
PP_0957 -1.0 -1.4 D-arabinose 5-phosphate isomerase compare
PP_4860 -1.0 -5.2 putative Mannose-6-phosphate isomerase compare
PP_1675 -1.0 -3.6 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0155 -1.0 -5.6 pyridine nucleotide transhydrogenase, beta subunit compare
PP_3507 -1.0 -5.6 Aerobic cobaltochelatase subunit CobN compare
PP_1217 -1.0 -2.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1783 -1.0 -0.7 dTDP-glucose pyrophosphorylase compare
PP_1862 -1.0 -2.8 conserved membrane protein of unknown function compare
PP_2459 -1.0 -1.3 ribose pyranase compare
PP_2203 -1.0 -1.2 conserved protein of unknown function compare
PP_2375 -1.0 -5.1 cobalamin-dependent methionine synthase compare
PP_0384 -0.9 -2.4 Transcriptional regulator, AsnC family compare
PP_2633 -0.9 -1.1 conserved protein of unknown function compare
PP_4940 -0.9 -3.9 Putative glycosyltransferase compare
PP_0362 -0.9 -4.7 Biotin synthase compare
PP_0735 -0.9 -0.8 molybdopterin-synthase adenylyltransferase compare
PP_3861 -0.9 -1.8 Phage FluMu protein gp46 compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source D-Lysine in Pseudomonas putida KT2440

For carbon source D-Lysine across organisms