Experiment set7IT051 for Pseudomonas putida KT2440

Compare to:

BC Lignin Sorghum 10 vol% carbon source

200 most important genes:

  gene name fitness t score description  
PP_1079 -4.5 -7.7 Ornithine carbamoyltransferase compare
PP_4723 -3.8 -8.8 Carbamoyl-phosphate synthase large chain compare
PP_4724 -3.7 -3.6 Carbamoyl-phosphate synthase small chain compare
PP_5095 -3.6 -2.5 pyrroline-5-carboxylate reductase compare
PP_0184 -3.4 -7.1 Argininosuccinate lyase compare
PP_1088 -3.3 -10.4 Argininosuccinate synthase compare
PP_0293 -2.9 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0691 -2.9 -4.0 Glutamate 5-kinase compare
PP_0001 -2.9 -2.6 probable chromosome-partitioning protein compare
PP_4874 -2.7 -2.4 50S ribosomal protein L9 compare
PP_0290 -2.6 -6.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0289 -2.5 -5.8 Imidazoleglycerol-phosphate dehydratase compare
PP_0048 -2.5 -1.8 conserved protein of unknown function compare
PP_4126 -2.5 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_5338 -2.4 -3.2 aspartate ammonia-lyase compare
PP_3378 -2.3 -2.9 putative 2-ketogluconokinase compare
PP_4999 -2.2 -1.5 dihydroorotase-like protein compare
PP_1428 -2.2 -3.9 Sigma factor AlgU negative regulatory protein compare
PP_0123 -2.0 -6.5 DNA polymerase I, 5 compare
PP_2214 -2.0 -3.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0292 -2.0 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0967 -2.0 -6.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5289 -2.0 -4.5 Acetylglutamate kinase compare
PP_1366 -1.9 -1.8 Transcriptional regulator MvaT, P16 subunit compare
PP_0966 -1.9 -6.5 Histidinol dehydrogenase compare
PP_2322 -1.8 -7.7 Major outer membrane lipoprotein compare
PP_0291 -1.8 -2.1 conserved protein of unknown function compare
PP_1654 -1.7 -3.1 cysteine synthase B compare
PP_1097 -1.7 -2.0 Methionine--tRNA ligase compare
PP_4546 -1.7 -4.5 ATP-dependent helicase HrpA compare
PP_3105 -1.7 -3.0 conserved membrane protein of unknown function compare
PP_2328 -1.7 -3.7 Phosphoadenosine phosphosulfate reductase compare
PP_5015 -1.6 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2309 -1.6 -1.7 conserved protein of unknown function compare
PP_4943 -1.6 -2.2 putative Glycosyl transferase compare
PP_1629 -1.6 -4.5 Protein RecA compare
PP_5309 -1.5 -2.3 oxidative and nitrosative stress transcriptional dual regulator compare
PP_5202 -1.5 -2.3 putative cell division protein compare
PP_5310 -1.5 -4.8 junction-specific ATP-dependent DNA helicase compare
PP_1216 -1.5 -2.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4804 -1.5 -3.3 RlpA-like lipoprotein compare
PP_0393 -1.5 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3649 -1.5 -2.2 Transcriptional regulator, GntR family compare
PP_4296 -1.4 -1.5 conserved exported protein of unknown function compare
PP_1713 -1.4 -2.0 Transcriptional regulator PcaQ compare
PP_2336 -1.4 -3.5 aconitate hydratase 1 compare
PP_2883 -1.4 -1.8 conserved protein of unknown function compare
PP_0965 -1.4 -6.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2378 -1.4 -2.2 Fe/S biogenesis protein NfuA compare
PP_1293 -1.4 -1.2 molybdopterin synthase small subunit compare
PP_5014 -1.3 -2.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_2972 -1.3 -3.2 conserved protein of unknown function compare
PP_0440 -1.3 -2.1 Elongation factor Tu-A compare
PP_0153 -1.3 -2.1 hypothetical protein compare
PP_5639 -1.3 -5.2 conserved exported protein of unknown function compare
PP_4700 -1.2 -1.4 pantothenate synthetase compare
PP_0833 -1.2 -1.9 queuine tRNA-ribosyltransferase compare
PP_2402 -1.2 -1.6 putative Sensor histidine kinase compare
PP_4004 -1.2 -2.2 DNA translocase FtsK compare
PP_2217 -1.2 -2.8 enoyl-CoA hydratase compare
PP_5185 -1.2 -2.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5507 -1.2 -2.6 protein of unknown function compare
PP_1783 -1.2 -1.3 dTDP-glucose pyrophosphorylase compare
PP_5230 -1.1 -2.3 Tyrosine recombinase XerC compare
PP_0775 -1.1 -1.1 conserved protein of unknown function compare
PP_4471 -1.1 -2.7 Magnesium transporter compare
PP_5007 -1.1 -1.9 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_3487 -1.1 -2.3 conserved exported protein of unknown function compare
PP_4696 -1.1 -3.2 Nitrogen regulation protein NR(I) compare
PP_1217 -1.1 -3.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1020 -1.1 -1.9 putative glucose-6-phosphate 1-epimerase compare
PP_5090 -1.1 -1.2 putative cell division protein compare
PP_4964 -1.1 -2.6 D-erythrose 4-phosphate dehydrogenase compare
PP_0685 -1.1 -2.1 conserved protein of unknown function compare
PP_1268 -1.1 -3.1 putative HtrA suppressor protein sohA compare
PP_0401 -1.1 -2.4 Ribosomal RNA small subunit methyltransferase A compare
PP_4355 -1.1 -1.7 flagellar export apparatus subunit compare
PP_2144 -1.1 -2.3 Transcriptional regulator, TetR family compare
PP_1493 -1.1 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5229 -1.0 -3.0 conserved protein of unknown function compare
PP_2031 -1.0 -1.5 conserved protein of unknown function compare
PP_1986 -1.0 -2.7 3-isopropylmalate dehydratase small subunit compare
PP_1062 -1.0 -2.7 MutT/nudix family protein compare
PP_1380 -1.0 -3.3 3-oxoadipate enol-lactonase 2 compare
PP_2105 -1.0 -3.7 conserved protein of unknown function compare
PP_0022 -1.0 -1.2 hypothetical protein compare
PP_4204 -1.0 -2.9 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1994 -1.0 -1.3 tRNA pseudouridine (38-40)synthase compare
PP_2060 -1.0 -2.0 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_3346 -1.0 -1.9 Nickel transporter ATP-binding protein compare
PP_3248 -1.0 -1.5 Dyp-type peroxidase family protein compare
PP_2337 -1.0 -1.6 aconitate isomerase compare
PP_4122 -1.0 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5352 -1.0 -5.3 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4656 -1.0 -3.9 protocatechuate 3,4-dioxygenase beta chain compare
PP_3999 -0.9 -3.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4890 -0.9 -2.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_2804 -0.9 -2.3 Hydrolase, alpha/beta fold family compare
PP_4782 -0.9 -2.6 Phosphomethylpyrimidine kinase compare
PP_3065 -0.9 -3.1 Pyocin R2_PP, tail formation compare
PP_0846 -0.9 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_5225 -0.9 -1.2 frataxin compare
PP_5654 -0.9 -1.9 putative phosphotriesterase compare
PP_0326 -0.9 -2.8 sarcosine oxidase subunit gamma compare
PP_t29 -0.9 -1.6 tRNA-Ala compare
PP_5055 -0.9 -2.2 Sulfurtransferase compare
PP_3380 -0.9 -2.4 2-ketogluconate utilization repressor compare
PP_2215 -0.9 -1.7 acetyl-CoA acetyltransferase compare
PP_2186 -0.9 -2.0 putative Formate dehydrogenase, delta subunit compare
PP_4120 -0.9 -2.1 NADH-quinone oxidoreductase subunit B compare
PP_0957 -0.9 -0.9 D-arabinose 5-phosphate isomerase compare
PP_2340 -0.9 -1.7 conserved protein of unknown function compare
PP_4620 -0.9 -3.7 Fumarylacetoacetase compare
PP_3829 -0.9 -2.7 Molybdenum transport system permease protein ModB compare
PP_4880 -0.9 -4.2 exoribonuclease R compare
PP_0003 -0.8 -1.6 16S RNA methyltransferase compare
PP_4693 -0.8 -2.2 RNA polymerase-binding transcription factor DksA compare
PP_3098 -0.8 -1.1 conserved protein of unknown function compare
PP_1734 -0.8 -1.7 Probable septum site-determining protein MinC compare
PP_2640 -0.8 -1.9 Acetyltransferase, GNAT family compare
PP_5274 -0.8 -1.4 conserved protein of unknown function compare
PP_2655 -0.8 -1.9 conserved protein of unknown function compare
PP_t13 -0.8 -1.5 tRNA-Lys compare
PP_1193 -0.8 -3.4 conserved membrane protein of unknown function compare
PP_1381 -0.8 -0.9 4-carboxymuconolactone decarboxylase compare
PP_3358 -0.8 -3.7 hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data) compare
PP_2718 -0.8 -1.2 arsenic resistance transcriptional regulator compare
PP_3312 -0.8 -1.1 putative Heat shock protein compare
PP_1066 -0.8 -2.6 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4988 -0.8 -2.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_3702 -0.8 -3.9 conserved protein of unknown function compare
PP_0683 -0.8 -2.6 conserved protein of unknown function compare
PP_5422 -0.8 -2.2 hypothetical protein compare
PP_4993 -0.8 -2.7 Glutathione synthetase compare
PP_5028 -0.8 -1.8 proline iminopeptidase compare
PP_0257 -0.8 -2.6 protein sulfur transferase compare
PP_4571 -0.8 -3.5 cysteine synthase A compare
PP_1261 -0.8 -1.9 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_5324 -0.8 -1.5 Response regulator compare
PP_3754 -0.8 -2.6 Beta-ketothiolase BktB compare
PP_3951 -0.8 -2.1 3-oxoadipate CoA-transferase subunit A compare
PP_2878 -0.8 -1.2 conserved protein of unknown function compare
PP_0910 -0.8 -2.5 conserved exported protein of unknown function compare
PP_3035 -0.7 -1.8 conserved protein of unknown function compare
PP_0313 -0.7 -1.6 putative electron transfer flavoprotein beta subunit compare
PP_0002 -0.7 -3.3 probable chromosome partition protein compare
PP_4482 -0.7 -1.8 Transcriptional regulator, AraC family compare
PP_4982 -0.7 -2.1 putative cytochrome b561, iron-regulated compare
PP_3946 -0.7 -0.5 HTH-type transcriptional repressor NicR compare
PP_0694 -0.7 -2.2 conserved protein of unknown function compare
PP_4678 -0.7 -4.6 Ketol-acid reductoisomerase compare
PP_1441 -0.7 -2.7 tRNA (cmo5U34)-methyltransferase compare
PP_4701 -0.7 -0.8 glucose-6-phosphate isomerase compare
PP_2899 -0.7 -1.2 conserved exported protein of unknown function compare
PP_4910 -0.7 -1.1 conserved protein of unknown function compare
PP_3935 -0.7 -1.8 conserved protein of unknown function compare
PP_3365 -0.7 -0.8 Acetolactate synthase compare
PP_2456 -0.7 -2.0 D-ribose ABC transporter - permease subunit compare
PP_4671 -0.7 -3.4 conserved exported protein of unknown function compare
PP_1439 -0.7 -0.9 conserved exported protein of unknown function compare
PP_0346 -0.7 -3.6 putative Heptose kinase WapQ compare
PP_0063 -0.7 -1.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2384 -0.7 -2.7 conserved membrane protein of unknown function compare
PP_5430 -0.7 -1.5 protein of unknown function compare
PP_3505 -0.7 -1.1 conserved protein of unknown function compare
PP_1763 -0.7 -1.5 putative oxidoreductase compare
PP_3770 -0.7 -1.2 conserved protein of unknown function compare
PP_4779 -0.7 -5.0 AMP nucleosidase compare
PP_1985 -0.7 -1.5 3-isopropylmalate dehydratase large subunit compare
PP_5058 -0.6 -2.1 Carboxy-terminal-processing protease compare
PP_1523 -0.6 -2.1 conserved protein of unknown function compare
PP_4342 -0.6 -1.7 flagellar synthesis regulator, putative ATPase compare
PP_0195 -0.6 -0.9 conserved protein of unknown function compare
PP_0871 -0.6 -2.1 putative Glycine betaine/carnitine/choline ABC transporter, permease protein compare
PP_3003 -0.6 -2.5 3-dehydroquinate dehydratase 3, type II compare
PP_0630 -0.6 -0.7 DNA gyrase inhibitor YacG compare
PP_3357 -0.6 -2.4 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) compare
PP_2302 -0.6 -1.9 DNA-binding, ATP-dependent protease compare
PP_5128 -0.6 -3.3 Dihydroxy-acid dehydratase compare
PP_3559 -0.6 -1.8 glycine betaine ABC transporter (permease) compare
PP_0325 -0.6 -4.7 sarcosine oxidase subunit alpha compare
PP_4569 -0.6 -1.4 conserved protein of unknown function compare
PP_3102 -0.6 -2.4 conserved protein of unknown function compare
PP_3480 -0.6 -1.7 conserved protein of unknown function compare
PP_5035 -0.6 -2.8 Histidine utilization repressor compare
PP_4633 -0.6 -1.6 conserved protein of unknown function, DUF1244 family compare
PP_2474 -0.6 -2.3 Glutathione S-transferase family protein compare
PP_3052 -0.6 -0.7 conserved protein of unknown function compare
PP_1348 -0.6 -2.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1233 -0.6 -1.8 sulfurtransferase compare
PP_3899 -0.6 -1.1 conserved protein of unknown function, hicB family compare
PP_5104 -0.6 -2.8 thiazole synthase compare
PP_0323 -0.6 -2.9 sarcosine oxidase subunit beta compare
PP_0972 -0.6 -1.0 UPF0213 protein PP_0972 compare
PP_0007 -0.6 -1.6 conserved hypothetical protein compare
PP_3929 -0.6 -2.8 conserved protein of unknown function compare
PP_3726 -0.6 -0.4 Enoyl-CoA hydratase/isomerase family protein compare
PP_1589 -0.6 -2.8 uridylyltransferase compare
PP_5448 -0.6 -1.6 conserved protein of unknown function compare
PP_1598 -0.6 -2.3 regulatory intramembrane protein RIP zinc protease compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source BC Lignin Sorghum across organisms