Experiment set7IT050 for Pseudomonas putida KT2440

Compare to:

BC Lignin Sorghum 20 vol% carbon source

200 most important genes:

  gene name fitness t score description  
PP_0184 -4.6 -6.9 Argininosuccinate lyase compare
PP_1088 -4.4 -11.6 Argininosuccinate synthase compare
PP_4723 -4.2 -6.4 Carbamoyl-phosphate synthase large chain compare
PP_4724 -4.1 -2.8 Carbamoyl-phosphate synthase small chain compare
PP_5015 -3.5 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_t12 -3.3 -1.9 tRNA-Thr compare
PP_1079 -3.3 -6.5 Ornithine carbamoyltransferase compare
PP_0691 -3.0 -4.5 Glutamate 5-kinase compare
PP_0123 -2.8 -5.3 DNA polymerase I, 5 compare
PP_5230 -2.7 -4.8 Tyrosine recombinase XerC compare
PP_5095 -2.6 -2.5 pyrroline-5-carboxylate reductase compare
PP_5014 -2.5 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_0289 -2.5 -7.0 Imidazoleglycerol-phosphate dehydratase compare
PP_3248 -2.4 -1.6 Dyp-type peroxidase family protein compare
PP_0967 -2.4 -8.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0290 -2.3 -7.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4999 -2.3 -1.6 dihydroorotase-like protein compare
PP_0966 -2.3 -11.1 Histidinol dehydrogenase compare
PP_1629 -2.2 -5.8 Protein RecA compare
PP_5185 -2.2 -5.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4546 -2.1 -4.0 ATP-dependent helicase HrpA compare
PP_3649 -1.9 -4.2 Transcriptional regulator, GntR family compare
PP_5289 -1.9 -4.8 Acetylglutamate kinase compare
PP_4890 -1.8 -5.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_2214 -1.8 -4.9 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0965 -1.7 -5.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4895 -1.7 -3.6 tRNA dimethylallyltransferase compare
PP_1233 -1.6 -3.1 sulfurtransferase compare
PP_2328 -1.6 -4.6 Phosphoadenosine phosphosulfate reductase compare
PP_2402 -1.6 -2.1 putative Sensor histidine kinase compare
PP_0735 -1.6 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_0001 -1.6 -1.9 probable chromosome-partitioning protein compare
PP_0292 -1.5 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2322 -1.5 -6.5 Major outer membrane lipoprotein compare
PP_5310 -1.5 -4.6 junction-specific ATP-dependent DNA helicase compare
PP_2740 -1.4 -2.8 Transcriptional regulator, MerR family compare
PP_4964 -1.4 -2.5 D-erythrose 4-phosphate dehydrogenase compare
PP_1689 -1.4 -8.5 putative Long-chain fatty acid transporter compare
PP_4696 -1.4 -4.8 Nitrogen regulation protein NR(I) compare
PP_1142 -1.4 -1.5 conserved protein of unknown function compare
PP_0719 -1.4 -1.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1986 -1.3 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_4620 -1.3 -5.9 Fumarylacetoacetase compare
PP_1654 -1.3 -2.6 cysteine synthase B compare
PP_1216 -1.3 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1468 -1.3 -1.2 Tyrosine recombinase XerD compare
PP_2336 -1.3 -3.3 aconitate hydratase 1 compare
PP_4993 -1.3 -4.1 Glutathione synthetase compare
PP_5309 -1.3 -2.6 oxidative and nitrosative stress transcriptional dual regulator compare
PP_5582 -1.3 -1.9 conserved protein of unknown function compare
PP_5216 -1.3 -2.1 exopolyphosphatase compare
PP_2144 -1.3 -2.7 Transcriptional regulator, TetR family compare
PP_0291 -1.3 -1.4 conserved protein of unknown function compare
PP_2217 -1.2 -2.7 enoyl-CoA hydratase compare
PP_0293 -1.2 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5639 -1.2 -4.7 conserved exported protein of unknown function compare
PP_0345 -1.2 -3.9 putative Heptose kinase WapP compare
PP_1783 -1.2 -1.3 dTDP-glucose pyrophosphorylase compare
PP_1985 -1.2 -3.7 3-isopropylmalate dehydratase large subunit compare
PP_2337 -1.2 -2.3 aconitate isomerase compare
PP_4700 -1.2 -1.5 pantothenate synthetase compare
PP_4937 -1.2 -2.6 toluene tolerance protein compare
PP_3951 -1.2 -4.1 3-oxoadipate CoA-transferase subunit A compare
PP_1428 -1.2 -2.2 Sigma factor AlgU negative regulatory protein compare
PP_1553 -1.2 -2.5 conserved protein of unknown function compare
PP_4342 -1.1 -3.0 flagellar synthesis regulator, putative ATPase compare
PP_2378 -1.1 -1.9 Fe/S biogenesis protein NfuA compare
PP_4120 -1.1 -2.5 NADH-quinone oxidoreductase subunit B compare
PP_3098 -1.1 -1.5 conserved protein of unknown function compare
PP_5058 -1.1 -4.1 Carboxy-terminal-processing protease compare
PP_4124 -1.1 -3.1 NADH-quinone oxidoreductase subunit G compare
PP_5575 -1.1 -2.6 conserved protein of unknown function compare
PP_4223 -1.0 -1.6 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4892 -1.0 -3.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4204 -1.0 -3.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0257 -1.0 -3.5 protein sulfur transferase compare
PP_3065 -1.0 -4.1 Pyocin R2_PP, tail formation compare
PP_4943 -1.0 -1.6 putative Glycosyl transferase compare
PP_4679 -1.0 -3.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3121 -1.0 -2.1 transcriptional regulator, LysR family compare
PP_5352 -1.0 -6.0 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0725 -1.0 -3.7 conserved hypothetical TPR repeat protein compare
PP_2929 -1.0 -5.1 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1215 -0.9 -0.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_4779 -0.9 -7.5 AMP nucleosidase compare
PP_1387 -0.9 -3.1 Probable HTH-type transcriptional regulator TtgR compare
PP_5191 -0.9 -2.4 conserved exported protein of unknown function compare
PP_3903 -0.9 -1.7 conserved protein of unknown function compare
PP_2000 -0.9 -1.2 amidophosphoribosyl transferase compare
PP_4726 -0.9 -1.9 Chaperone protein DnaJ compare
PP_5104 -0.9 -4.4 thiazole synthase compare
PP_5093 -0.9 -1.2 twitching motility protein compare
PP_0593 -0.9 -1.1 putative ribosome-binding factor compare
PP_4571 -0.9 -4.9 cysteine synthase A compare
PP_5063 -0.9 -2.9 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_4782 -0.9 -2.4 Phosphomethylpyrimidine kinase compare
PP_4693 -0.9 -3.1 RNA polymerase-binding transcription factor DksA compare
PP_4917 -0.9 -2.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3840 -0.9 -1.3 conserved protein of unknown function compare
PP_5SB -0.9 -3.3 5S ribosomal RNA compare
PP_1729 -0.9 -1.6 conserved protein of unknown function compare
PP_4471 -0.9 -2.9 Magnesium transporter compare
PP_3999 -0.9 -3.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5338 -0.9 -1.5 aspartate ammonia-lyase compare
PP_2437 -0.9 -4.6 putative Acyl-CoA dehydrogenase compare
PP_5359 -0.9 -2.6 CobW/P47K family protein compare
PP_3511 -0.8 -4.5 Branched-chain-amino-acid aminotransferase compare
PP_0962 -0.8 -1.7 toluene-tolerance protein compare
PP_5652 -0.8 -2.0 conserved protein of unknown function, phage origin compare
PP_4799 -0.8 -1.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2302 -0.8 -2.7 DNA-binding, ATP-dependent protease compare
PP_1731 -0.8 -3.2 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_2060 -0.8 -1.8 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4004 -0.8 -2.4 DNA translocase FtsK compare
PP_5028 -0.8 -2.5 proline iminopeptidase compare
PP_3748 -0.8 -1.7 conserved hypothetical protein compare
PP_4482 -0.8 -2.9 Transcriptional regulator, AraC family compare
PP_3105 -0.8 -1.6 conserved membrane protein of unknown function compare
PP_4880 -0.8 -3.9 exoribonuclease R compare
PP_2387 -0.8 -2.3 conserved protein of unknown function compare
PP_0393 -0.8 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0440 -0.8 -2.8 Elongation factor Tu-A compare
PP_3808 -0.8 -1.4 Antibiotic synthesis protein MbtH compare
PP_0276 -0.8 -0.9 Transcriptional regulator, Cro/CI family compare
PP_5201 -0.8 -1.4 conserved protein of unknown function, UPF0149 family compare
PP_2371 -0.8 -2.3 Sulphite reductase hemoprotein, beta subunit compare
PP_4277 -0.8 -4.2 Transcriptional regulator, GntR family compare
PP_0214 -0.8 -2.6 4-aminobutyrate aminotransferase compare
PP_5604 -0.7 -1.1 putative subtilisin-like serine protease compare
PP_1702 -0.7 -2.6 Recombination-associated protein RdgC compare
PP_3819 -0.7 -4.2 glutathione reductase (NADPH) compare
PP_2121 -0.7 -1.5 putative Lipoprotein compare
PP_3239 -0.7 -2.2 putative cointegrate resolution protein T Tn4652 compare
PP_5274 -0.7 -2.2 conserved protein of unknown function compare
PP_5217 -0.7 -5.9 Polyphosphate kinase compare
PP_2215 -0.7 -2.0 acetyl-CoA acetyltransferase compare
PP_0275 -0.7 -3.0 conserved protein of unknown function compare
PP_5045 -0.7 -2.1 tRNA sulfurtransferase compare
PP_0653 -0.7 -1.1 conserved protein of unknown function compare
PP_5507 -0.7 -1.9 protein of unknown function compare
PP_0958 -0.7 -3.3 phospholipid ABC transporter ATP-binding subunit compare
PP_4121 -0.7 -2.2 NADH-quinone oxidoreductase subunit C/D compare
PP_5094 -0.7 -2.2 putative enzyme with PLP binding domain compare
PP_2123 -0.7 -3.7 molybdenum::molybdopterin ligase compare
PP_1111 -0.7 -3.0 putative Synthetase compare
PP_4499 -0.7 -2.1 putative maturation enzyme compare
PP_0980 -0.7 -3.0 Probable cytosol aminopeptidase compare
PP_4126 -0.7 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_2509 -0.7 -1.7 conserved protein of unknown function compare
PP_1994 -0.7 -1.0 tRNA pseudouridine (38-40)synthase compare
PP_0820 -0.7 -3.5 GCN5-related N-acetyltransferase compare
PP_4868 -0.7 -3.8 Nicotinate phosphoribosyltransferase compare
PP_2429 -0.7 -1.6 putative Membrane protein compare
PP_1941 -0.7 -2.9 conserved protein of unknown function compare
PP_2655 -0.7 -2.5 conserved protein of unknown function compare
PP_5654 -0.7 -1.4 putative phosphotriesterase compare
PP_0220 -0.7 -2.0 methionine import ATP-binding protein metN2 compare
PP_2880 -0.7 -1.3 Transcriptional regulator, TetR family compare
PP_4814 -0.7 -1.7 ATP-dependent protease La domain protein compare
PP_4848 -0.7 -1.3 Curved DNA-binding protein compare
PP_1736 -0.6 -1.4 conserved protein of unknown function compare
PP_t10 -0.6 -1.0 tRNA-Pro compare
PP_3614 -0.6 -1.5 conserved membrane protein of unknown function compare
PP_2928 -0.6 -3.7 Saccharopine dehydrogenase compare
PP_1380 -0.6 -2.0 3-oxoadipate enol-lactonase 2 compare
PP_1097 -0.6 -1.0 Methionine--tRNA ligase compare
PP_1293 -0.6 -1.2 molybdopterin synthase small subunit compare
PP_3919 -0.6 -2.1 conserved protein of unknown function compare
PP_5609 -0.6 -1.7 conserved protein of unknown function compare
PP_2693 -0.6 -2.2 putative Dipeptidase compare
PP_0083 -0.6 -2.4 tryptophan synthase beta chain compare
PP_3136 -0.6 -2.8 putative O-acetyltransferase compare
PP_3003 -0.6 -2.3 3-dehydroquinate dehydratase 3, type II compare
PP_4285 -0.6 -3.1 5-hydroxyisourate hydrolase compare
PP_4273 -0.6 -1.0 Transcriptional regulator, MerR family compare
PP_2999 -0.6 -1.0 Glyoxalase family protein compare
PP_4847 -0.6 -1.3 chaperone modulatory of CbpA co-chaperone protein compare
PP_3020 -0.6 -1.8 putative Serine/threonine protein phosphatase compare
PP_3277 -0.6 -2.6 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_4944 -0.6 -2.6 Carbamoyltransferase compare
PP_1834 -0.6 -2.2 conserved protein of unknown function compare
PP_4678 -0.6 -4.4 Ketol-acid reductoisomerase compare
PP_2823 -0.6 -2.9 Methyl-accepting chemotaxis transducer compare
PP_3926 -0.6 -0.8 short-chain dehydrogenase compare
PP_1439 -0.6 -1.2 conserved exported protein of unknown function compare
PP_1988 -0.6 -3.9 3-isopropylmalate dehydrogenase compare
PP_5571 -0.6 -0.8 conserved protein of unknown function compare
PP_3378 -0.6 -0.8 putative 2-ketogluconokinase compare
PP_0022 -0.6 -0.9 hypothetical protein compare
PP_3902 -0.6 -1.5 conserved protein of unknown function compare
PP_1377 -0.6 -3.3 beta-ketoadipyl-CoA thiolase compare
PP_1292 -0.6 -2.5 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_0194 -0.6 -2.6 Transcriptional regulatory protein AlgP compare
PP_2462 -0.6 -0.7 conserved protein of unknown function compare
PP_5128 -0.6 -2.9 Dihydroxy-acid dehydratase compare
PP_1217 -0.6 -1.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4910 -0.6 -0.9 conserved protein of unknown function compare
PP_5612 -0.6 -2.8 protein of unknown function compare
PP_0120 -0.6 -2.8 putative zinc ABC transporter compare
PP_1048 -0.6 -1.3 putative protein secretion protein for export compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source BC Lignin Sorghum in Pseudomonas putida KT2440

For carbon source BC Lignin Sorghum across organisms