Experiment set7IT048 for Pseudomonas simiae WCS417

Compare to:

LB with Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

200 most important genes:

  gene name fitness t score description  
PS417_24155 -5.7 -5.6 ATP-binding protein compare
PS417_08125 -4.0 -1.9 prephenate dehydratase compare
PS417_20985 -3.8 -5.0 porin compare
PS417_23770 -2.8 -3.2 exodeoxyribonuclease V subunit alpha compare
PS417_04380 -2.4 -2.0 ABC transporter permease compare
PS417_06600 -2.2 -1.4 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_00705 -1.9 -1.4 MarR family transcriptional regulator compare
PS417_23380 -1.9 -2.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_03560 -1.8 -2.4 GTP-binding protein compare
PS417_00755 -1.8 -1.0 biofilm PGA synthesis protein PgaD compare
PS417_02280 -1.7 -2.0 GlcNAc-PI de-N-acetylase compare
PS417_08220 -1.6 -1.3 epimerase compare
PS417_23950 -1.6 -1.6 polynucleotide phosphorylase/polyadenylase compare
PS417_14280 -1.6 -2.6 hypothetical protein compare
PS417_27870 -1.6 -3.9 ATP-dependent DNA helicase RecG compare
PS417_19755 -1.5 -1.8 flagellar motor switch protein FliM compare
PS417_02210 -1.5 -4.7 diguanylate cyclase compare
PS417_01920 -1.5 -1.6 ATP-dependent protease subunit HslV compare
PS417_02270 -1.5 -4.0 carbamoyltransferase compare
PS417_04305 -1.4 -1.7 aspartate ammonia-lyase compare
PS417_19805 -1.4 -2.3 flagellar M-ring protein FliF compare
PS417_08155 -1.4 -1.7 integration host factor subunit beta compare
PS417_04375 -1.4 -2.9 ABC transporter ATP-binding protein compare
PS417_13510 -1.3 -1.3 polyketide cyclase compare
PS417_22300 -1.3 -1.5 LTXXQ domain protein compare
PS417_01285 -1.3 -2.2 haloacid dehalogenase compare
PS417_00975 -1.3 -1.4 hypothetical protein compare
PS417_10870 -1.3 -2.5 GABA permease compare
PS417_21625 -1.3 -1.3 DNA-binding protein compare
PS417_07305 -1.3 -2.1 3-beta hydroxysteroid dehydrogenase compare
PS417_00180 -1.2 -2.3 tryptophan synthase subunit alpha compare
PS417_17610 -1.2 -1.6 AsnC family transcriptional regulator compare
PS417_08540 -1.2 -2.7 RNA helicase compare
PS417_23375 -1.2 -1.8 cytochrome C oxidase compare
PS417_22800 -1.2 -2.8 heme iron utilization protein compare
PS417_22520 -1.2 -1.9 histidine kinase compare
PS417_06100 -1.2 -1.8 SAM-dependent methyltransferase compare
PS417_27515 -1.1 -3.3 heme biosynthesis protein HemY compare
PS417_05160 -1.1 -1.1 DNA polymerase III subunit chi compare
PS417_19350 -1.1 -3.9 GTP cyclohydrolase compare
PS417_21630 -1.1 -2.5 magnesium transporter compare
PS417_01560 -1.1 -2.2 imidazoleglycerol-phosphate dehydratase compare
PS417_26725 -1.1 -3.7 hypothetical protein compare
PS417_00195 -1.1 -2.0 hypothetical protein compare
PS417_03045 -1.1 -1.8 hypothetical protein compare
PS417_02365 -1.1 -2.7 hypothetical protein compare
PS417_21015 -1.0 -2.4 EstX protein compare
PS417_22050 -1.0 -3.9 ribonuclease BN compare
PS417_15285 -1.0 -0.9 type VI secretion protein compare
PS417_25155 -1.0 -1.4 hypothetical protein compare
PS417_19285 -1.0 -1.5 ankyrin compare
PS417_09210 -1.0 -1.4 TetR family transcriptional regulator compare
PS417_21760 -1.0 -1.3 hypothetical protein compare
PS417_21065 -1.0 -2.1 3-methylitaconate isomerase compare
PS417_12505 -1.0 -2.2 peptidase compare
PS417_09235 -1.0 -1.1 molecular chaperone compare
PS417_24525 -1.0 -2.0 nuclease compare
PS417_19645 -1.0 -1.3 chemotaxis protein compare
PS417_06680 -1.0 -4.6 nuclease PIN compare
PS417_16950 -0.9 -2.5 fimbrial protein compare
PS417_08225 -0.9 -4.4 acetolactate synthase compare
PS417_08150 -0.9 -2.0 hypothetical protein compare
PS417_11615 -0.9 -1.4 urea ABC transporter ATP-binding protein compare
PS417_06375 -0.9 -0.6 deoxycytidine triphosphate deaminase compare
PS417_01570 -0.9 -2.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_11075 -0.9 -2.4 hydroxypyruvate isomerase compare
PS417_19675 -0.9 -2.4 chemotaxis protein CheY compare
PS417_19195 -0.9 -2.0 hypothetical protein compare
PS417_17945 -0.9 -0.7 hypothetical protein compare
PS417_13755 -0.9 -1.4 oxidoreductase compare
PS417_22175 -0.9 -1.1 amino acid transporter LysE compare
PS417_23890 -0.9 -2.7 ATPase compare
PS417_04650 -0.9 -1.3 D-alanine--D-alanine ligase compare
PS417_17930 -0.9 -2.0 aldehyde dehydrogenase compare
PS417_18780 -0.8 -1.1 flavin reductase compare
PS417_19275 -0.8 -1.2 hypothetical protein compare
PS417_15915 -0.8 -1.2 hypothetical protein compare
PS417_15305 -0.8 -1.8 type VI secretion protein compare
PS417_00810 -0.8 -1.7 RNA polymerase sigma factor compare
PS417_12035 -0.8 -1.1 dihydroxyacetone kinase compare
PS417_23805 -0.8 -3.8 acetolactate synthase 3 regulatory subunit compare
PS417_02560 -0.8 -1.5 23S rRNA methyltransferase compare
PS417_23385 -0.8 -3.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_00845 -0.8 -0.8 transcriptional regulator compare
PS417_14235 -0.8 -2.4 hypothetical protein compare
PS417_02990 -0.8 -1.7 hypothetical protein compare
PS417_06540 -0.8 -1.1 membrane protein compare
PS417_19760 -0.8 -2.4 flagellar basal body protein FliL compare
PS417_22810 -0.8 -1.0 DNA base-flipping protein YbaZ compare
PS417_03260 -0.8 -1.3 5S ribosomal RNA compare
PS417_01425 -0.8 -1.9 AraC family transcriptional regulator compare
PS417_22450 -0.8 -0.8 ATP-dependent DNA helicase RuvA compare
PS417_02720 -0.8 -0.8 TetR family transcriptional regulator compare
PS417_06095 -0.8 -1.3 energy transducer TonB compare
PS417_27425 -0.8 -4.0 exopolyphosphatase compare
PS417_22640 -0.8 -2.7 cytochrome C biogenesis protein CcmE compare
PS417_11400 -0.8 -1.3 phosphoglycerate mutase compare
PS417_05695 -0.8 -2.8 transcriptional regulator compare
PS417_08190 -0.8 -5.5 membrane protein compare
PS417_02950 -0.8 -1.2 tRNA-dihydrouridine synthase B compare
PS417_23390 -0.8 -3.9 ubiquinol oxidase subunit II compare
PS417_24200 -0.8 -3.4 GCN5 family acetyltransferase compare
PS417_22565 -0.8 -0.8 formyltetrahydrofolate deformylase compare
PS417_23910 -0.8 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_13620 -0.8 -1.0 thermostable hemolysin compare
PS417_00030 -0.8 -2.5 hypothetical protein compare
PS417_09150 -0.8 -1.7 energy transducer TonB compare
PS417_00220 -0.8 -0.9 hypothetical protein compare
PS417_15095 -0.8 -1.6 hypothetical protein compare
PS417_25780 -0.7 -2.3 molecular chaperone DnaJ compare
PS417_06145 -0.7 -0.8 hypothetical protein compare
PS417_27705 -0.7 -1.1 amino acid dehydrogenase compare
PS417_22115 -0.7 -2.4 transcriptional regulator compare
PS417_11480 -0.7 -1.8 hypothetical protein compare
PS417_10335 -0.7 -1.4 peroxiredoxin compare
PS417_15100 -0.7 -1.9 BatB protein compare
PS417_11390 -0.7 -2.2 LysR family transcriptional regulator compare
PS417_27585 -0.7 -1.4 diaminopimelate epimerase compare
PS417_00945 -0.7 -1.5 sulfate ABC transporter ATP-binding protein compare
PS417_07035 -0.7 -4.1 uracil-DNA glycosylase compare
PS417_12280 -0.7 -1.2 MerR family transcriptional regulator compare
PS417_00405 -0.7 -4.2 DNA polymerase I compare
PS417_20125 -0.7 -2.3 phosphoribosylglycinamide formyltransferase compare
PS417_16760 -0.7 -2.8 membrane protein compare
PS417_08195 -0.7 -4.3 hypothetical protein compare
PS417_18395 -0.7 -1.4 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_11670 -0.7 -1.5 multidrug transporter MATE compare
PS417_14045 -0.7 -2.2 alkyl hydroperoxide reductase compare
PS417_19415 -0.7 -1.4 allantoinase compare
PS417_19335 -0.7 -1.0 isochorismatase compare
PS417_09705 -0.7 -1.6 hypothetical protein compare
PS417_11175 -0.7 -1.0 AraC family transcriptional regulator compare
PS417_02740 -0.7 -1.5 LysR family transcriptional regulator compare
PS417_08200 -0.7 -1.9 hypothetical protein compare
PS417_14870 -0.7 -2.1 transporter compare
PS417_22260 -0.7 -1.3 segregation and condensation protein B compare
PS417_15890 -0.7 -1.0 RNA polymerase sigma factor compare
PS417_26260 -0.7 -0.8 hypothetical protein compare
PS417_04390 -0.7 -2.8 toluene tolerance protein compare
PS417_10600 -0.7 -0.9 hypothetical protein compare
PS417_19600 -0.7 -0.7 exonuclease compare
PS417_06125 -0.7 -1.5 hypothetical protein compare
PS417_00995 -0.6 -1.1 alpha/beta hydrolase compare
PS417_10665 -0.6 -1.0 hypothetical protein compare
PS417_10305 -0.6 -1.1 hypothetical protein compare
PS417_07875 -0.6 -0.6 hypothetical protein compare
PS417_17840 -0.6 -1.3 betaine-aldehyde dehydrogenase compare
PS417_13785 -0.6 -1.8 hypothetical protein compare
PS417_13435 -0.6 -2.1 LuxR family transcriptional regulator compare
PS417_08620 -0.6 -0.6 hypothetical protein compare
PS417_23915 -0.6 -1.4 pantoate--beta-alanine ligase compare
PS417_15790 -0.6 -1.7 hypothetical protein compare
PS417_21510 -0.6 -0.8 histidine kinase compare
PS417_08590 -0.6 -1.2 hypothetical protein compare
PS417_20950 -0.6 -1.6 hypothetical protein compare
PS417_05065 -0.6 -1.1 hypothetical protein compare
PS417_21400 -0.6 -2.4 TetR family transcriptional regulator compare
PS417_02815 -0.6 -1.1 urea ABC transporter ATP-binding protein compare
PS417_23105 -0.6 -1.1 hypothetical protein compare
PS417_17635 -0.6 -2.4 hemolysin secretion protein D compare
PS417_20610 -0.6 -0.9 hypothetical protein compare
PS417_26190 -0.6 -2.8 sarcosine oxidase subunit beta compare
PS417_20520 -0.6 -1.0 3-phosphoglycerate kinase compare
PS417_09010 -0.6 -0.6 phosphohistidine phosphatase compare
PS417_00535 -0.6 -1.0 Holliday junction resolvase compare
PS417_01825 -0.6 -0.9 chemotaxis protein compare
PS417_01200 -0.6 -2.8 phosphoesterase compare
PS417_10175 -0.6 -2.4 hypothetical protein compare
PS417_06400 -0.6 -1.8 succinylglutamate desuccinylase compare
PS417_14515 -0.6 -1.0 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_06710 -0.6 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_15485 -0.6 -1.8 amino acid ABC transporter permease compare
PS417_02065 -0.6 -2.9 membrane protein compare
PS417_03815 -0.6 -1.4 DNA transporter compare
PS417_24655 -0.6 -1.8 hypothetical protein compare
PS417_13490 -0.6 -0.9 hypothetical protein compare
PS417_01855 -0.6 -0.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_06110 -0.6 -2.3 RND transporter compare
PS417_11885 -0.6 -1.2 Inositol transport system sugar-binding protein (from data) compare
PS417_17160 -0.6 -1.3 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_26900 -0.6 -0.7 L-cystine transporter tcyP compare
PS417_02820 -0.6 -1.2 urea ABC transporter ATP-binding protein compare
PS417_10765 -0.6 -1.9 hypothetical protein compare
PS417_19650 -0.6 -2.9 chemotaxis protein CheW compare
PS417_02415 -0.6 -1.4 phosphoserine phosphatase compare
PS417_19420 -0.6 -1.9 OHCU decarboxylase compare
PS417_17240 -0.6 -1.6 trigger factor compare
PS417_08580 -0.6 -2.8 histidine kinase compare
PS417_13725 -0.6 -1.2 membrane protein compare
PS417_05825 -0.6 -1.8 cytochrome D ubiquinol oxidase subunit II compare
PS417_25120 -0.6 -1.3 capsular biosynthesis protein compare
PS417_18930 -0.6 -0.9 restriction endonuclease subunit S compare
PS417_00085 -0.6 -1.7 16S rRNA methyltransferase compare
PS417_24605 -0.6 -2.0 thiamine-phosphate pyrophosphorylase compare
PS417_27360 -0.6 -1.4 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_17580 -0.6 -1.6 citrulline utilization hydrolase (from data) compare
PS417_00385 -0.6 -0.6 Fur family transcriptional regulator compare
PS417_21025 -0.6 -2.4 PEP synthetase regulatory protein compare
PS417_08950 -0.6 -2.0 DeoR faimly transcriptional regulator compare
PS417_23810 -0.6 -4.1 acetolactate synthase 3 catalytic subunit compare


Specific Phenotypes

For 6 genes in this experiment

For supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms