Experiment set7IT048 for Pseudomonas simiae WCS417

Compare to:

LB with Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x

200 most detrimental genes:

  gene name fitness t score description  
PS417_26730 +2.5 2.5 pyrroline-5-carboxylate reductase compare
PS417_02880 +1.9 7.6 copper chaperone compare
PS417_20715 +1.7 4.3 cytochrome Cbb3 compare
PS417_23170 +1.6 3.8 FeS assembly protein IscX compare
PS417_20785 +1.6 6.7 transcriptional regulator compare
PS417_27075 +1.6 7.2 thiol-disulfide isomerase compare
PS417_20160 +1.6 9.0 cysteine synthase compare
PS417_01605 +1.5 3.0 phosphoglycerate mutase compare
PS417_00510 +1.5 1.2 membrane protein compare
PS417_20705 +1.5 4.7 cbb3-type cytochrome c oxidase subunit II compare
PS417_18360 +1.5 3.1 hypothetical protein compare
PS417_23545 +1.5 6.2 gamma-glutamyl kinase compare
PS417_22735 +1.5 9.4 thiol oxidoreductase compare
PS417_26850 +1.4 1.3 twin-arginine translocation pathway signal protein compare
PS417_20755 +1.4 5.9 membrane protein compare
PS417_22740 +1.3 8.0 imelysin compare
PS417_11700 +1.3 9.0 ligand-gated channel compare
PS417_22745 +1.3 6.1 hypothetical protein compare
PS417_21655 +1.2 1.4 aspartate kinase compare
PS417_00345 +1.2 3.3 copper-binding protein compare
PS417_21780 +1.2 3.0 argininosuccinate lyase compare
PS417_25710 +1.2 2.1 indole-3-glycerol-phosphate synthase compare
PS417_20700 +1.2 8.2 cbb3-type cytochrome c oxidase subunit I compare
PS417_09470 +1.2 1.1 hypothetical protein compare
PS417_05210 +1.2 5.7 copper oxidase compare
PS417_01705 +1.2 6.1 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) compare
PS417_26240 +1.1 1.7 N-methylproline demethylase compare
PS417_08665 +1.1 4.0 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_24745 +1.1 3.4 gamma-glutamyl phosphate reductase compare
PS417_28450 +1.1 3.6 XRE family transcriptional regulator compare
PS417_27835 +1.1 3.9 endoribonuclease compare
PS417_13990 +1.1 3.3 LysR family transcriptional regulator compare
PS417_14065 +1.1 4.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_04080 +1.0 2.9 peptide ABC transporter substrate-binding protein compare
PS417_10720 +1.0 4.9 chemotaxis protein CheY compare
PS417_04050 +1.0 2.1 peptide ABC transporter ATP-binding protein compare
PS417_15735 +1.0 4.6 histidine kinase compare
PS417_08670 +1.0 4.0 molybdopterin biosynthesis protein B compare
PS417_26695 +1.0 1.6 uracil phosphoribosyltransferase compare
PS417_22195 +1.0 4.1 peptidase compare
PS417_27815 +1.0 1.3 hypothetical protein compare
PS417_02485 +1.0 4.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_14655 +1.0 1.3 lysine transporter LysE compare
PS417_27875 +1.0 5.2 histidine kinase compare
PS417_15730 +1.0 3.7 major facilitator transporter compare
PS417_02745 +1.0 1.6 FMN-dependent NADH-azoreductase compare
PS417_23995 +1.0 1.2 preprotein translocase subunit SecG compare
PS417_07845 +1.0 1.7 transcriptional regulator compare
PS417_14120 +1.0 5.2 molybdenum ABC transporter permease compare
PS417_02160 +0.9 1.1 hypothetical protein compare
PS417_04865 +0.9 3.0 molybdenum cofactor biosynthesis protein MoaC compare
PS417_17590 +0.9 1.3 ABC transporter substrate-binding protein compare
PS417_07455 +0.9 1.5 glutamine amidotransferase compare
PS417_22870 +0.9 2.7 lipoprotein compare
PS417_15740 +0.9 6.1 hypothetical protein compare
PS417_09605 +0.9 2.1 glycosyl transferase compare
PS417_10405 +0.9 1.0 filamentous hemagglutinin compare
PS417_13545 +0.9 1.5 arginine aminotransferase compare
PS417_09575 +0.9 2.7 glutathione S-transferase compare
PS417_17320 +0.9 2.4 phenylhydantoinase compare
PS417_05140 +0.9 2.0 dipicolinate synthase compare
PS417_01850 +0.9 2.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_27040 +0.9 2.5 3-phosphoglycerate dehydrogenase compare
PS417_14115 +0.9 4.1 molybdate ABC transporter substrate-binding protein compare
PS417_24935 +0.9 1.0 hypothetical protein compare
PS417_00515 +0.9 5.8 membrane protein compare
PS417_02805 +0.9 1.8 urease subunit gamma compare
PS417_14875 +0.9 4.0 polyisoprenoid-binding protein compare
PS417_18990 +0.9 1.7 membrane protein compare
PS417_11945 +0.9 2.5 hypothetical protein compare
PS417_25700 +0.9 1.6 cyclic AMP receptor protein compare
PS417_27800 +0.9 3.6 exodeoxyribonuclease III compare
PS417_25290 +0.9 1.6 hypothetical protein compare
PS417_15725 +0.9 3.5 nitrate/nitrite transporter NarK compare
PS417_12780 +0.8 3.3 (Fe-S)-binding protein compare
PS417_17835 +0.8 2.8 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_03525 +0.8 1.5 hypothetical protein compare
PS417_15935 +0.8 1.3 Rrf2 family transcriptional regulator compare
PS417_06365 +0.8 4.9 RNA polymerase sigma factor compare
PS417_06245 +0.8 2.3 zinc metallopeptidase RseP compare
PS417_15705 +0.8 1.8 nitrate reductase compare
PS417_16275 +0.8 2.5 hypothetical protein compare
PS417_26755 +0.8 0.8 nucleoside-triphosphate diphosphatase compare
PS417_26605 +0.8 0.8 malonate decarboxylase subunit beta compare
PS417_21955 +0.8 1.9 dehydrogenase compare
PS417_19825 +0.8 4.9 ATPase AAA compare
PS417_12695 +0.8 2.8 mannitol dehydrogenase compare
PS417_21480 +0.8 1.4 23S rRNA pseudouridylate synthase compare
PS417_23625 +0.8 1.5 LysR family transcriptional regulator compare
PS417_14200 +0.8 1.5 hypothetical protein compare
PS417_24225 +0.8 1.5 hypothetical protein compare
PS417_06025 +0.8 2.2 alpha/beta hydrolase compare
PS417_14125 +0.8 2.3 molybdenum ABC transporter ATP-binding protein compare
PS417_18715 +0.8 5.0 peptidase M4 compare
PS417_25315 +0.8 3.6 membrane protein compare
PS417_18020 +0.8 1.3 hypothetical protein compare
PS417_18060 +0.8 2.0 general secretion pathway protein GspJ compare
PS417_06030 +0.8 2.7 hypothetical protein compare
PS417_15720 +0.8 5.5 nitrate reductase compare
PS417_10095 +0.8 1.6 hypothetical protein compare
PS417_14540 +0.8 1.0 cytochrome C oxidase subunit III compare
PS417_03380 +0.8 0.8 hypothetical protein compare
PS417_23575 +0.7 1.5 hypothetical protein compare
PS417_02845 +0.7 2.4 ABC transporter permease compare
PS417_11865 +0.7 1.4 xylose isomerase compare
PS417_21395 +0.7 3.9 radical SAM protein compare
PS417_08090 +0.7 0.9 3-oxoacyl-ACP reductase compare
PS417_24615 +0.7 0.9 hypothetical protein compare
PS417_16370 +0.7 3.8 chemotaxis protein CheY compare
PS417_14420 +0.7 2.0 acyl-CoA dehydrogenase compare
PS417_15715 +0.7 4.7 nitrate reductase compare
PS417_23855 +0.7 1.5 ABC transporter substrate-binding protein compare
PS417_05085 +0.7 3.5 ribosomal subunit interface protein compare
PS417_13455 +0.7 0.8 alkaline proteinase inhibitor compare
PS417_12175 +0.7 2.3 peptide ABC transporter permease compare
PS417_22690 +0.7 1.3 phosphogluconate dehydratase compare
PS417_18235 +0.7 1.5 nitrile hydratase compare
PS417_02475 +0.7 2.1 N-acetylmuramoyl-L-alanine amidase compare
PS417_21680 +0.7 3.0 succinylglutamate desuccinylase compare
PS417_17630 +0.7 2.0 RNA polymerase sigma factor compare
PS417_10575 +0.7 1.4 DNA alkylation repair protein compare
PS417_27135 +0.7 0.6 glutamine synthetase compare
PS417_17855 +0.7 1.3 major facilitator transporter compare
PS417_22630 +0.7 1.3 hypothetical protein compare
PS417_22610 +0.7 2.1 pilus assembly protein PilZ compare
PS417_12355 +0.7 1.2 magnesium chelatase compare
PS417_00155 +0.7 2.2 2-dehydro-3-deoxygalactonokinase compare
PS417_19430 +0.7 1.6 ureidoglycolate hydrolase compare
PS417_03455 +0.7 1.0 type III secretion protein compare
PS417_16810 +0.7 1.7 acyl-CoA dehydrogenase compare
PS417_27555 +0.7 2.2 DNA-binding protein compare
PS417_15510 +0.7 1.0 hypothetical protein compare
PS417_11510 +0.7 1.2 AraC family transcriptional regulator compare
PS417_06780 +0.7 1.3 TetR family transcriptional regulator compare
PS417_26305 +0.7 2.1 AraC family transcriptional regulator compare
PS417_14965 +0.7 2.2 transcriptional regulator compare
PS417_24705 +0.7 2.6 D-alanyl-D-alanine carboxypeptidase compare
PS417_07820 +0.7 1.3 transposase compare
PS417_20860 +0.7 2.9 DNA polymerase III subunit gamma/tau compare
PS417_04705 +0.7 1.3 hypothetical protein compare
PS417_25390 +0.6 2.1 MFS transporter compare
PS417_24800 +0.6 2.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_17415 +0.6 2.1 histidine kinase compare
PS417_03475 +0.6 1.7 type III secretion protein compare
PS417_16180 +0.6 2.0 MFS transporter compare
PS417_28170 +0.6 2.3 transcriptional regulator compare
PS417_08730 +0.6 1.5 cytochrome C compare
PS417_20040 +0.6 1.5 cobyric acid synthase compare
PS417_03465 +0.6 1.0 type III secretion protein compare
PS417_23045 +0.6 1.7 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_08365 +0.6 0.7 hypothetical protein compare
PS417_13660 +0.6 1.6 AsnC family transcriptional regulator compare
PS417_26815 +0.6 1.3 peptidase M16 compare
PS417_05975 +0.6 0.6 chemotaxis protein CheW compare
PS417_00630 +0.6 3.0 nitrate ABC transporter substrate-binding protein compare
PS417_25055 +0.6 1.2 transposase compare
PS417_01375 +0.6 1.9 hypothetical protein compare
PS417_02030 +0.6 2.1 3-oxoacyl-ACP synthase compare
PS417_16165 +0.6 2.2 ABC transporter substrate-binding protein compare
PS417_08435 +0.6 1.2 pilus assembly protein PilZ compare
PS417_08585 +0.6 1.8 ATPase AAA compare
PS417_12760 +0.6 2.4 histidine kinase compare
PS417_22720 +0.6 1.7 membrane protein compare
PS417_24840 +0.6 1.1 hypothetical protein compare
PS417_08685 +0.6 0.8 flagellar hook-length control protein FliK compare
PS417_13925 +0.6 2.2 hypothetical protein compare
PS417_09595 +0.6 2.1 membrane protein compare
PS417_11455 +0.6 1.3 hypothetical protein compare
PS417_10445 +0.6 1.3 LysR family transcriptional regulator compare
PS417_18200 +0.6 1.5 glyoxalase compare
PS417_16535 +0.6 1.9 NUDIX hydrolase compare
PS417_23715 +0.6 1.7 cupin compare
PS417_01715 +0.6 0.9 hypothetical protein compare
PS417_27435 +0.6 2.2 polyphosphate kinase compare
PS417_18160 +0.6 1.2 YeeE/YedE compare
PS417_17035 +0.6 0.8 Cro/Cl family transcriptional regulator compare
PS417_15885 +0.6 1.0 GCN5 family acetyltransferase compare
PS417_01430 +0.6 1.3 chromosome segregation protein SMC compare
PS417_24135 +0.6 1.3 hypothetical protein compare
PS417_05055 +0.6 2.0 hypothetical protein compare
PS417_24030 +0.6 1.1 MFS transporter compare
PS417_24460 +0.6 1.3 hypothetical protein compare
PS417_15390 +0.6 1.5 hypothetical protein compare
PS417_14780 +0.6 2.2 GNAT family acetyltraansferase compare
PS417_26580 +0.6 1.6 malonate transporter compare
PS417_01410 +0.6 2.6 transporter compare
PS417_28270 +0.6 2.0 hypothetical protein compare
PS417_18720 +0.6 2.4 endonuclease compare
PS417_11875 +0.6 2.1 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
PS417_02765 +0.6 0.9 phosphate starvation-inducible protein PsiF compare
PS417_14325 +0.6 1.0 AraC family transcriptional regulator compare
PS417_19020 +0.6 1.6 dimethylmenaquinone methyltransferase compare
PS417_27290 +0.6 0.8 hypothetical protein compare
PS417_15475 +0.5 1.7 IclR family transcriptional regulator compare
PS417_16045 +0.5 0.8 acyl-CoA dehydrogenase compare
PS417_19425 +0.5 0.6 allantoicase compare
PS417_13255 +0.5 1.0 ABC transporter compare
PS417_15450 +0.5 2.0 ABC transporter permease compare
PS417_11925 +0.5 1.3 hypothetical protein compare
PS417_25905 +0.5 1.1 AsnC family transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment

For supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms