Experiment set7IT048 for Pseudomonas putida KT2440

Compare to:

3-methyl-1-butanol 0.1 vol% carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
PP_4065 -6.3 -10.5 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_4266 -5.5 -5.3 Adenine phosphoribosyltransferase compare
PP_4064 -5.1 -14.2 isovaleryl-CoA dehydrogenase compare
PP_1617 -5.0 -8.7 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase compare
PP_3587 -4.4 -6.1 lipid hydroperoxide peroxidase compare
PP_3123 -3.8 -8.7 acetoacetyl CoA-transferase (subunit B) compare
PP_1505 -3.7 -12.2 Phosphoenolpyruvate carboxylase compare
PP_3456 -3.4 -8.7 Multidrug resistance protein MexB compare
PP_4549 -3.3 -11.0 long-chain-fatty-acid/CoA ligase compare
PP_4063 -3.3 -11.2 putative Long-chain-fatty-acid-CoA ligase compare
PP_5139 -3.3 -7.2 cadmium translocating P-type ATPase compare
PP_1695 -3.0 -10.6 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_0927 -2.8 -11.8 aromatic amino acid transport protein compare
PP_3455 -2.6 -5.0 Multidrug efflux RND membrane fusion protein compare
PP_4487 -2.6 -13.6 acetyl-CoA synthetase compare
PP_2439 -2.5 -5.6 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_0325 -2.4 -12.6 sarcosine oxidase subunit alpha compare
PP_1034 -2.3 -9.3 multicopper oxidase compare
PP_5024 -2.3 -6.7 Amino acid ABC transporter, periplasmic amino acid-binding protein compare
PP_4495 -2.3 -12.9 aromatic amino acid transport protein compare
PP_4923 -2.2 -7.1 Outer membrane efflux protein compare
PP_0324 -2.2 -7.7 sarcosine oxidase subunit delta compare
PP_1009 -2.1 -6.2 glyceraldehyde-3-phosphate dehydrogenase compare
PP_1752 -2.1 -5.3 conserved protein of unknown function compare
PP_5283 -2.1 -5.5 periplasmic dipeptide transport protein compare
PP_4632 -2.0 -6.0 dihydrofolate reductase / dihydromonapterin reductase compare
PP_0266 -2.0 -6.7 Agmatine deiminase compare
PP_5184 -2.0 -5.0 glutamylpolyamine synthetase compare
PP_0111 -2.0 -5.4 Electron transport protein SCO1/SenC compare
PP_3819 -1.9 -6.3 glutathione reductase (NADPH) compare
PP_0248 -1.9 -9.5 Probable alpha-L-glutamate ligase compare
PP_0746 -1.9 -5.4 Uracil phosphoribosyltransferase compare
PP_4900 -1.8 -6.5 epoxyqueuosine reductase compare
PP_1758 -1.7 -5.7 putative sulfurtransferase containing rhodanese-like domain compare
PP_4896 -1.6 -6.1 DNA mismatch repair protein MutL compare
PP_5538 -1.6 -5.1 putative ABC transporter, substrate-binding protein compare
PP_0058 -1.6 -11.6 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_0909 -1.6 -5.9 conserved exported protein of unknown function compare
PP_0680 -1.6 -9.0 ATP-dependent protease-like protein compare
PP_4571 -1.5 -6.6 cysteine synthase A compare
PP_4619 -1.4 -5.4 Maleylacetoacetate isomerase compare
PP_4490 -1.4 -5.7 phenylalanine-4-hydroxylase compare
PP_1984 -1.4 -5.6 Transcriptional regulator, LysR family compare
PP_4403 -1.4 -5.7 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_3065 -1.3 -5.1 Pyocin R2_PP, tail formation compare
PP_0988 -1.3 -6.4 glycine dehydrogenase compare
PP_0567 -1.2 -5.8 Biosynthetic arginine decarboxylase compare
PP_4489 -1.2 -6.0 sigma-54 dependent transcriptional regulator compare
PP_4565 -1.2 -6.3 Isocitrate dehydrogenase kinase/phosphatase compare
PP_4613 -1.1 -5.1 outer membrane ferric citrate porin compare
PP_0234 -1.1 -5.3 outer-membrane porin E compare
PP_1139 -1.0 -6.5 branched chain amino acid transporter - permease subunit compare
PP_3668 -1.0 -5.9 Catalase-peroxidase compare
PP_4882 +1.0 5.7 Iron ABC transporter, permease protein compare
PP_4881 +1.0 6.3 putative Iron ABC transporter, periplasmic iron-binding protein compare
PP_1792 +1.0 8.5 Glycosyl transferase, group 2 family protein compare
PP_0020 +1.0 7.3 hypothetical protein compare
PP_0096 +1.1 7.8 oligopeptidase A compare
PP_0482 +1.1 5.3 bacterioferritin compare
PP_0354 +1.2 8.0 CBS domain protein compare
PP_0145 +1.2 6.3 Na+/Pi-cotransporter compare
PP_4737 +1.2 7.4 D-lactate dehydrogenase compare
PP_0881 +1.3 5.0 dipeptide ABC transporter - putative membrane subunit compare
PP_1084 +1.4 5.4 putative peroxiredoxin compare
PP_0879 +1.4 6.0 dipeptide ABC transporter - putative ATP binding subunit compare
PP_4578 +1.5 9.5 Major facilitator family transporter compare
PP_1515 +1.5 5.2 Transcriptional regulator, tetR family compare
PP_5426 +1.6 9.4 conserved protein of unknown function compare
PP_4575 +1.6 5.3 Urea amidolyase-related protein compare
PP_1056 +1.7 7.6 putative Iron-chelator utilization protein compare
PP_1082 +1.7 5.0 bacterioferritin compare
PP_4579 +1.8 10.8 Transcriptional regulator, LysR family compare
PP_5212 +1.9 7.9 Oxidoreductase, iron-sulfur-binding compare
PP_4577 +2.0 12.8 UPF0271 protein PP_4577 compare
PP_4576 +2.0 14.2 allophanate hydrolase subunit compare
PP_1021 +2.2 10.3 DNA-binding transcriptional regulator compare
PP_4628 +3.3 12.4 conserved protein of unknown function compare
PP_5314 +3.9 27.5 Rubredoxin-NAD(+) reductase compare


Specific phenotypes for carbon source 3-methyl-1-butanol across organisms