Experiment set7IT048 for Pseudomonas putida KT2440

Compare to:

3-methyl-1-butanol 0.1 vol% carbon source

200 most important genes:

  gene name fitness t score description  
PP_4067 -7.2 -5.0 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_5104 -7.2 -4.9 thiazole synthase compare
PP_5659 -7.1 -4.8 protein of unknown function compare
PP_1985 -6.9 -4.7 3-isopropylmalate dehydratase large subunit compare
PP_2675 -6.8 -4.6 Cytochrome c-type protein compare
PP_0293 -6.6 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0356 -6.6 -7.8 malate synthase G compare
PP_3505 -6.5 -3.4 conserved protein of unknown function compare
PP_0966 -6.4 -7.7 Histidinol dehydrogenase compare
PP_4116 -6.4 -9.7 isocitrate lyase compare
PP_4065 -6.3 -10.5 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_1988 -6.2 -8.5 3-isopropylmalate dehydrogenase compare
PP_1986 -6.2 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_5015 -6.2 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0290 -6.1 -7.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0967 -6.1 -10.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0787 -6.1 -5.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1995 -6.1 -4.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4679 -6.0 -7.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4909 -6.0 -4.1 phosphoserine phosphatase compare
PP_5097 -5.9 -11.3 homoserine O-acetyltransferase compare
PP_1231 -5.9 -5.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0422 -5.9 -7.0 Indole-3-glycerol phosphate synthase compare
PP_1635 -5.8 -3.8 DNA-binding response regulator compare
PP_1764 -5.7 -7.9 Phosphoglycolate phosphatase 2 compare
PP_5035 -5.7 -7.8 Histidine utilization repressor compare
PP_5185 -5.6 -3.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4680 -5.6 -14.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0082 -5.6 -3.9 tryptophan synthase alpha chain compare
PP_2820 -5.5 -3.6 HTH-type transcriptional regulator nfxB compare
PP_1233 -5.5 -3.8 sulfurtransferase compare
PP_4266 -5.5 -5.3 Adenine phosphoribosyltransferase compare
PP_1079 -5.5 -6.6 Ornithine carbamoyltransferase compare
PP_0965 -5.5 -10.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0513 -5.5 -3.3 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0417 -5.5 -20.2 Anthranilate synthase component 1 compare
PP_4678 -5.4 -16.4 Ketol-acid reductoisomerase compare
PP_4829 -5.4 -3.7 putative precorrin-3B synthase compare
PP_1428 -5.4 -3.7 Sigma factor AlgU negative regulatory protein compare
PP_4515 -5.3 -7.3 Transcriptional regulator, MarR family compare
PP_3821 -5.3 -12.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4890 -5.3 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_0420 -5.3 -12.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0083 -5.3 -3.7 tryptophan synthase beta chain compare
PP_4826 -5.3 -6.3 Precorrin-3B C17-methyltransferase compare
PP_5098 -5.2 -9.4 methionine biosynthesis protein MetW compare
PP_0289 -5.2 -8.7 Imidazoleglycerol-phosphate dehydratase compare
PP_4984 -5.2 -13.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0366 -5.2 -6.6 dethiobiotin synthetase compare
PP_1088 -5.1 -8.5 Argininosuccinate synthase compare
PP_4064 -5.1 -14.2 isovaleryl-CoA dehydrogenase compare
PP_4782 -5.0 -6.0 Phosphomethylpyrimidine kinase compare
PP_4922 -5.0 -13.7 Phosphomethylpyrimidine synthase compare
PP_1617 -5.0 -8.7 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase compare
PP_3511 -5.0 -8.4 Branched-chain-amino-acid aminotransferase compare
PP_0948 -4.9 -2.1 Phosphocarrier protein HPr compare
PP_4620 -4.9 -10.3 Fumarylacetoacetase compare
PP_1216 -4.8 -3.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0960 -4.7 -6.5 phospholipid ABC transporter binding protein compare
PP_0376 -4.7 -11.7 Coenzyme PQQ synthesis protein E compare
PP_5289 -4.7 -6.8 Acetylglutamate kinase compare
PP_0363 -4.7 -14.6 8-amino-7-oxononanoate synthase compare
PP_5303 -4.7 -7.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1672 -4.6 -7.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0691 -4.6 -3.2 Glutamate 5-kinase compare
PP_2371 -4.6 -3.2 Sulphite reductase hemoprotein, beta subunit compare
PP_0362 -4.6 -12.3 Biotin synthase compare
PP_3649 -4.6 -3.2 Transcriptional regulator, GntR family compare
PP_0364 -4.6 -9.4 pimeloyl-[acp] methyl ester esterase compare
PP_5128 -4.6 -8.8 Dihydroxy-acid dehydratase compare
PP_3506 -4.6 -4.0 Magnesium chelatase, subunit ChII compare
PP_4943 -4.6 -3.0 putative Glycosyl transferase compare
PP_0292 -4.6 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1941 -4.5 -7.2 conserved protein of unknown function compare
PP_2001 -4.5 -8.4 O-succinylhomoserine sulfhydrylase compare
PP_0421 -4.5 -8.0 Anthranilate phosphoribosyltransferase compare
PP_4723 -4.5 -3.1 Carbamoyl-phosphate synthase large chain compare
PP_5014 -4.5 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_0949 -4.5 -6.8 putative ATP-binding protein UPF0042 compare
PP_1215 -4.5 -2.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_0735 -4.4 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_3662 -4.4 -10.5 conserved protein of unknown function compare
PP_3587 -4.4 -6.1 lipid hydroperoxide peroxidase compare
PP_5022 -4.4 -1.9 Glutamine transport ATP-binding protein GlnQ compare
PP_0959 -4.3 -3.7 phospholipid ABC transporter compare
PP_1763 -4.3 -5.3 putative oxidoreductase compare
PP_0184 -4.3 -8.2 Argininosuccinate lyase compare
PP_2475 -4.3 -5.0 Transcriptional regulator, TetR family compare
PP_0378 -4.2 -8.1 Pyrroloquinoline-quinone synthase compare
PP_4696 -4.2 -5.0 Nitrogen regulation protein NR(I) compare
PP_0958 -4.2 -8.4 phospholipid ABC transporter ATP-binding subunit compare
PP_0365 -4.2 -10.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4066 -4.1 -2.9 methylglutaconyl-CoA hydratase compare
PP_4724 -4.1 -2.8 Carbamoyl-phosphate synthase small chain compare
PP_4832 -4.1 -6.0 Precorrin-6x reductase compare
PP_1654 -4.0 -3.9 cysteine synthase B compare
PP_3286 -4.0 -8.4 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4917 -4.0 -2.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4874 -3.9 -2.4 50S ribosomal protein L9 compare
PP_0381 -3.8 -6.6 Coenzyme PQQ synthesis protein F compare
PP_3123 -3.8 -8.7 acetoacetyl CoA-transferase (subunit B) compare
PP_0910 -3.8 -6.6 conserved exported protein of unknown function compare
PP_3121 -3.8 -4.3 transcriptional regulator, LysR family compare
PP_1348 -3.7 -5.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1505 -3.7 -12.2 Phosphoenolpyruvate carboxylase compare
PP_4836 -3.7 -4.9 conserved exported protein of unknown function compare
PP_4902 -3.7 -2.5 Oligoribonuclease compare
PP_0725 -3.7 -7.8 conserved hypothetical TPR repeat protein compare
PP_4936 -3.7 -7.8 O-antigen polymerase compare
PP_5095 -3.7 -2.2 pyrroline-5-carboxylate reductase compare
PP_5058 -3.5 -7.5 Carboxy-terminal-processing protease compare
PP_2327 -3.5 -7.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2217 -3.5 -3.5 enoyl-CoA hydratase compare
PP_4004 -3.5 -4.7 DNA translocase FtsK compare
PP_3456 -3.4 -8.7 Multidrug resistance protein MexB compare
PP_3946 -3.4 -1.4 HTH-type transcriptional repressor NicR compare
PP_5145 -3.4 -17.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2665 -3.4 -5.1 Glycerol metabolism activator compare
PP_4120 -3.4 -2.3 NADH-quinone oxidoreductase subunit B compare
PP_4549 -3.3 -11.0 long-chain-fatty-acid/CoA ligase compare
PP_1025 -3.3 -8.4 2-isopropylmalate synthase compare
PP_4940 -3.3 -7.8 Putative glycosyltransferase compare
PP_1076 -3.3 -7.8 aquaglyceroporin compare
PP_4063 -3.3 -11.2 putative Long-chain-fatty-acid-CoA ligase compare
PP_5139 -3.3 -7.2 cadmium translocating P-type ATPase compare
PP_4482 -3.3 -5.2 Transcriptional regulator, AraC family compare
PP_0856 -3.3 -4.4 conserved lipoprotein of unknown function compare
PP_0719 -3.3 -2.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0961 -3.2 -7.7 toluene tolerance protein compare
PP_0833 -3.2 -3.8 queuine tRNA-ribosyltransferase compare
PP_4124 -3.2 -2.2 NADH-quinone oxidoreductase subunit G compare
PP_3508 -3.2 -3.5 Protein CobW compare
PP_4827 -3.2 -9.8 Precorrin-2 C(20)-methyltransferase compare
PP_5155 -3.2 -3.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4699 -3.1 -5.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0832 -3.1 -4.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1679 -3.1 -3.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1695 -3.0 -10.6 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_0913 -3.0 -6.5 conserved exported protein of unknown function compare
PP_0962 -2.9 -3.8 toluene-tolerance protein compare
PP_1387 -2.9 -4.5 Probable HTH-type transcriptional regulator TtgR compare
PP_3999 -2.9 -3.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1673 -2.9 -6.6 cobyrinate a,c-diamide synthase compare
PP_1598 -2.9 -5.2 regulatory intramembrane protein RIP zinc protease compare
PP_1208 -2.8 -2.9 conserved protein of unknown function, SlyX family compare
PP_4828 -2.8 -1.7 Precorrin-8X methylmutase compare
PP_4131 -2.8 -3.8 NADH-quinone oxidoreductase subunit N compare
PP_2402 -2.8 -3.7 putative Sensor histidine kinase compare
PP_1099 -2.8 -2.5 Cold shock protein CapB compare
PP_2163 -2.8 -6.7 VacJ lipoprotein compare
PP_0123 -2.8 -6.9 DNA polymerase I, 5 compare
PP_5217 -2.8 -13.7 Polyphosphate kinase compare
PP_0927 -2.8 -11.8 aromatic amino acid transport protein compare
PP_1675 -2.8 -7.1 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0406 -2.7 -4.7 Nucleotidyltransferase family protein compare
PP_0063 -2.7 -5.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5230 -2.7 -3.4 Tyrosine recombinase XerC compare
PP_2302 -2.7 -5.6 DNA-binding, ATP-dependent protease compare
PP_1678 -2.7 -3.3 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_3603 -2.7 -5.7 Transcriptional regulator, GntR family compare
PP_0401 -2.6 -3.1 Ribosomal RNA small subunit methyltransferase A compare
PP_1681 -2.6 -8.5 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1677 -2.6 -4.7 Adenosyl-cobyric acid synthase compare
PP_1217 -2.6 -5.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3455 -2.6 -5.0 Multidrug efflux RND membrane fusion protein compare
PP_4126 -2.6 -1.8 NADH-quinone oxidoreductase subunit I compare
PP_4487 -2.6 -13.6 acetyl-CoA synthetase compare
PP_2682 -2.6 -4.0 Fe-containing alcohol dehydrogenase compare
PP_1719 -2.6 -8.2 Tail-specific protease prc compare
PP_4961 -2.6 -1.8 putative Lipoprotein compare
PP_3507 -2.6 -10.6 Aerobic cobaltochelatase subunit CobN compare
PP_0566 -2.6 -1.3 translation-related factor compare
PP_2378 -2.5 -1.7 Fe/S biogenesis protein NfuA compare
PP_2439 -2.5 -5.6 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_4058 -2.5 -11.0 1,4-alpha-glucan branching enzyme compare
PP_0377 -2.5 -1.9 coenzyme PQQ synthesis protein D compare
PP_5146 -2.5 -7.4 RNA pyrophosphohydrolase compare
PP_0122 -2.5 -2.5 conserved exported protein of unknown function compare
PP_2433 -2.5 -1.9 conserved protein of unknown function compare
PP_3122 -2.5 -4.2 acetoacetyl CoA-transferase (subunit A) compare
PP_4121 -2.5 -2.9 NADH-quinone oxidoreductase subunit C/D compare
PP_3409 -2.5 -3.3 putative Cobalamin biosynthesis protein cobE compare
PP_4880 -2.4 -6.8 exoribonuclease R compare
PP_4693 -2.4 -5.7 RNA polymerase-binding transcription factor DksA compare
PP_1075 -2.4 -7.5 glycerol kinase compare
PP_3248 -2.4 -1.6 Dyp-type peroxidase family protein compare
PP_0325 -2.4 -12.6 sarcosine oxidase subunit alpha compare
PP_4937 -2.4 -3.6 toluene tolerance protein compare
PP_5347 -2.4 -9.5 pyruvate carboxylase subunit A compare
PP_2370 -2.4 -3.0 conserved protein of unknown function compare
PP_5085 -2.4 -6.7 malic enzyme B compare
PP_1214 -2.4 -3.3 putative transcriptional regulatory protein compare
PP_5000 -2.4 -1.6 peptidase component of the ATP-dependent HslVU protease compare
PP_4964 -2.4 -1.6 D-erythrose 4-phosphate dehydrogenase compare
PP_1034 -2.3 -9.3 multicopper oxidase compare
PP_5024 -2.3 -6.7 Amino acid ABC transporter, periplasmic amino acid-binding protein compare
PP_4495 -2.3 -12.9 aromatic amino acid transport protein compare
PP_2568 -2.3 -1.5 Ring-cleaving dioxygenase compare
PP_4129 -2.3 -1.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0345 -2.3 -3.8 putative Heptose kinase WapP compare


Specific Phenotypes

For 78 genes in this experiment

For carbon source 3-methyl-1-butanol in Pseudomonas putida KT2440

For carbon source 3-methyl-1-butanol across organisms