Experiment set7IT047 for Pseudomonas simiae WCS417

200 most important genes:

gene	name	fitness	t score	description
PS417_24705		-7.2	-4.0	D-alanyl-D-alanine carboxypeptidase
PS417_24155		-6.1	-4.2	ATP-binding protein
PS417_27705		-5.8	-1.6	amino acid dehydrogenase
PS417_20985		-5.4	-4.3	porin
PS417_08125		-5.3	-1.5	prephenate dehydratase
PS417_24745		-5.0	-5.9	gamma-glutamyl phosphate reductase
PS417_04060		-4.7	-4.0	dipeptide ABC transporter, permease component (from data)
PS417_00185		-4.6	-4.7	tryptophan synthase subunit beta
PS417_17545		-4.4	-3.9	2-oxoisovalerate dehydrogenase
PS417_06245		-4.0	-2.8	zinc metallopeptidase RseP
PS417_26985		-4.0	-4.2	phosphoenolpyruvate-protein phosphotransferase
PS417_07560		-4.0	-1.8	universal stress protein UspA
PS417_04075		-3.8	-7.7	peptide ABC transporter substrate-binding protein
PS417_04070		-3.8	-8.4	porin
PS417_27795		-3.8	-1.0	orotate phosphoribosyltransferase
PS417_06375		-3.6	-1.0	deoxycytidine triphosphate deaminase
PS417_05165		-3.6	-2.0	cytosol aminopeptidase
PS417_27875		-3.6	-7.3	histidine kinase
PS417_27195		-3.6	-1.4	N-acetylglutamate synthase
PS417_04535		-3.3	-4.0	lysine transporter LysE
PS417_06600		-3.3	-1.3	leucine/isoleucine/valine transporter ATP-binding subunit
PS417_23770		-3.2	-1.9	exodeoxyribonuclease V subunit alpha
PS417_23545		-3.2	-2.1	gamma-glutamyl kinase
PS417_04050		-3.2	-2.0	peptide ABC transporter ATP-binding protein
PS417_01710		-3.1	-5.0	histidine utilization repressor
PS417_03560		-3.1	-2.5	GTP-binding protein
PS417_04365		-3.1	-1.2	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
PS417_01620		-3.0	-4.0	preprotein translocase subunit SecB
PS417_17550		-2.9	-3.4	branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data)
PS417_04055		-2.8	-4.0	peptide transporter
PS417_18560		-2.8	-6.8	N-(5'-phosphoribosyl)anthranilate isomerase
PS417_00385		-2.8	-1.3	Fur family transcriptional regulator
PS417_19335		-2.7	-3.3	isochorismatase
PS417_02415		-2.7	-5.2	phosphoserine phosphatase
PS417_01605		-2.7	-1.8	phosphoglycerate mutase
PS417_03260		-2.7	-2.3	5S ribosomal RNA
PS417_18310		-2.6	-2.6	hypothetical protein
PS417_17565		-2.6	-3.1	branched-chain amino acid aminotransferase
PS417_21070		-2.5	-2.4	aconitate hydratase
PS417_00180		-2.5	-3.9	tryptophan synthase subunit alpha
PS417_14065		-2.5	-5.9	UTP--glucose-1-phosphate uridylyltransferase
PS417_25710		-2.4	-1.3	indole-3-glycerol-phosphate synthase
PS417_17015		-2.4	-5.5	Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data)
PS417_26730		-2.4	-0.9	pyrroline-5-carboxylate reductase
PS417_22740		-2.4	-5.3	imelysin
PS417_21210		-2.4	-2.2	amidotransferase
PS417_07875		-2.4	-1.1	hypothetical protein
PS417_05695		-2.3	-4.7	transcriptional regulator
PS417_22195		-2.3	-3.9	peptidase
PS417_22735		-2.2	-8.8	thiol oxidoreductase
PS417_02560		-2.2	-2.3	23S rRNA methyltransferase
PS417_21680		-2.2	-3.3	succinylglutamate desuccinylase
PS417_03100		-2.2	-1.4	pilus assembly protein
PS417_27870		-2.2	-3.3	ATP-dependent DNA helicase RecG
PS417_09210		-2.2	-1.8	TetR family transcriptional regulator
PS417_04380		-2.2	-1.3	ABC transporter permease
PS417_17945		-2.1	-1.1	hypothetical protein
PS417_03455		-2.1	-1.6	type III secretion protein
PS417_20160		-2.1	-2.6	cysteine synthase
PS417_23910		-2.1	-4.0	3-methyl-2-oxobutanoate hydroxymethyltransferase
PS417_04860		-2.0	-5.4	ATPase
PS417_22450		-2.0	-1.8	ATP-dependent DNA helicase RuvA
PS417_22745		-2.0	-4.0	hypothetical protein
PS417_01580		-2.0	-1.4	imidazole glycerol phosphate synthase
PS417_11705		-2.0	-7.1	cyclic peptide transporter
PS417_07170		-2.0	-3.4	hypothetical protein
PS417_04065		-1.9	-4.4	peptide ABC transporter substrate-binding protein
PS417_01510		-1.9	-2.3	hypothetical protein
PS417_23830		-1.9	-8.1	hypothetical protein
PS417_21655		-1.8	-0.6	aspartate kinase
PS417_21000		-1.8	-2.7	CrfX protein
PS417_06615		-1.8	-3.7	ABC transporter for branched-chain amino acids, substrate-binding component (from data)
PS417_01705		-1.8	-6.8	Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data)
PS417_04180		-1.8	-4.0	GntR family transcriptional regulator
PS417_08545		-1.8	-1.6	aromatic ring-opening dioxygenase LigB
PS417_00650		-1.8	-0.8	LysR family transcriptional regulator
PS417_04270		-1.8	-6.7	ribonuclease G
PS417_07615		-1.8	-5.1	TetR family transcriptional regulator
PS417_06365		-1.8	-7.0	RNA polymerase sigma factor
PS417_01920		-1.8	-1.7	ATP-dependent protease subunit HslV
PS417_15135		-1.8	-1.9	hypothetical protein
PS417_00345		-1.7	-2.4	copper-binding protein
PS417_14005		-1.7	-7.1	4-hydroxyphenylpyruvate dioxygenase
PS417_27800		-1.7	-5.3	exodeoxyribonuclease III
PS417_13870		-1.7	-2.7	hypothetical protein
PS417_19955		-1.7	-1.8	hypothetical protein
PS417_02175		-1.7	-2.5	transcriptional regulator
PS417_22680		-1.7	-4.0	chemotaxis protein CheY
PS417_01850		-1.7	-4.1	phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data)
PS417_01855		-1.7	-2.3	phosphoribosyl-AMP cyclohydrolase
PS417_10520		-1.6	-2.9	succinyl-CoA:3-ketoacid-CoA transferase
PS417_12695		-1.6	-3.6	mannitol dehydrogenase
PS417_19350		-1.6	-2.7	GTP cyclohydrolase
PS417_05015		-1.6	-3.0	homogentisate 1,2-dioxygenase
PS417_01915		-1.6	-0.9	ATP-dependent protease ATP-binding subunit HslU
PS417_06605		-1.6	-4.6	leucine/isoleucine/valine transporter permease subunit
PS417_16400		-1.6	-2.0	NAD(P)H-quinone oxidoreductase
PS417_22570		-1.5	-0.9	H-NS histone
PS417_11055		-1.5	-3.4	AraC family transcriptional regulator
PS417_06500		-1.5	-1.1	hypothetical protein
PS417_19160		-1.5	-3.2	hypothetical protein
PS417_12200		-1.5	-3.1	microcin ABC transporter permease
PS417_22445		-1.5	-2.9	ATP-dependent DNA helicase RuvB
PS417_27135		-1.5	-0.7	glutamine synthetase
PS417_25715		-1.5	-3.1	anthranilate phosphoribosyltransferase
PS417_25390		-1.5	-3.9	MFS transporter
PS417_13885		-1.5	-2.8	chemotaxis protein CheY
PS417_05860		-1.4	-2.7	hypothetical protein
PS417_25650		-1.4	-2.9	anhydro-N-acetylmuramic acid kinase
PS417_02455		-1.4	-3.3	putative transporter, required for glycine utilization (from data)
PS417_12855		-1.4	-2.9	3-phosphoshikimate 1-carboxyvinyltransferase
PS417_26020		-1.4	-7.6	transcriptional initiation protein Tat
PS417_04585		-1.4	-1.1	hypothetical protein
PS417_01715		-1.4	-0.7	hypothetical protein
PS417_21630		-1.4	-1.9	magnesium transporter
PS417_10995		-1.4	-2.0	GntR family transcriptional regulator
PS417_05210		-1.4	-3.6	copper oxidase
PS417_24230		-1.4	-4.6	ATP-dependent protease
PS417_17610		-1.4	-1.9	AsnC family transcriptional regulator
PS417_27315		-1.3	-1.1	hypothetical protein
PS417_23775		-1.3	-2.1	exodeoxyribonuclease V subunit beta
PS417_11725		-1.3	-2.7	peptidase M19
PS417_28040		-1.3	-3.1	histidine kinase
PS417_02280		-1.3	-0.9	GlcNAc-PI de-N-acetylase
PS417_26470		-1.3	-1.7	cytochrome C
PS417_23380		-1.3	-1.7	cytochrome o ubiquinol oxidase subunit III
PS417_26555		-1.3	-3.0	endoribonuclease L-PSP
PS417_18040		-1.3	-1.6	general secretion pathway protein GspN
PS417_26695		-1.3	-0.9	uracil phosphoribosyltransferase
PS417_25725		-1.3	-5.1	anthranilate synthase component I
PS417_23250		-1.3	-4.4	S-adenosylmethionine tRNA ribosyltransferase
PS417_12205		-1.3	-5.4	hypothetical protein
PS417_20340		-1.3	-1.7	hypothetical protein
PS417_18060		-1.3	-2.0	general secretion pathway protein GspJ
PS417_11175		-1.3	-2.7	AraC family transcriptional regulator
PS417_16990		-1.3	-4.1	acyl-CoA dehydrogenase
PS417_05865		-1.3	-1.7	hypothetical protein
PS417_09300		-1.3	-2.4	peptidylprolyl isomerase
PS417_23825		-1.3	-5.9	penicillin-binding protein
PS417_20610		-1.3	-1.1	hypothetical protein
PS417_15885		-1.3	-1.1	GCN5 family acetyltransferase
PS417_07165		-1.3	-2.8	dihydrodipicolinate synthase
PS417_13795		-1.3	-4.2	UDP-4-amino-4-deoxy-L-arabinose formyltransferase
PS417_04080		-1.3	-1.7	peptide ABC transporter substrate-binding protein
PS417_19675		-1.3	-3.7	chemotaxis protein CheY
PS417_17630		-1.2	-1.2	RNA polymerase sigma factor
PS417_01145		-1.2	-0.8	taurine transporter ATP-binding subunit
PS417_28035		-1.2	-3.0	transcriptional regulator PhoB
PS417_25790		-1.2	-4.7	aminoglycoside phosphotransferase
PS417_08190		-1.2	-6.5	membrane protein
PS417_07820		-1.2	-1.1	transposase
PS417_05025		-1.2	-1.6	maleylacetoacetate isomerase
PS417_08990		-1.2	-2.7	ABC transporter substrate-binding protein
PS417_09150		-1.2	-1.7	energy transducer TonB
PS417_22520		-1.2	-1.4	histidine kinase
PS417_13165		-1.2	-1.4	peroxidase
PS417_13800		-1.2	-2.0	4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase
PS417_13055		-1.2	-1.4	aminotransferase
PS417_26565		-1.2	-1.8	LysR family transcriptional regulator
PS417_07470		-1.2	-0.7	hypothetical protein
PS417_08580		-1.2	-4.1	histidine kinase
PS417_21065		-1.2	-1.3	3-methylitaconate isomerase
PS417_23205		-1.2	-3.8	transcriptional regulator
PS417_22700		-1.2	-2.4	RNA polymerase subunit sigma-24
PS417_08135		-1.2	-3.5	3-phosphoshikimate 1-carboxyvinyltransferase
PS417_16715		-1.2	-0.9	DoxX family protein
PS417_08230		-1.2	-1.5	lipopolysaccharide biosynthesis protein RfbH
PS417_18425		-1.2	-1.6	sporulation protein
PS417_08185		-1.1	-3.2	glycosyl transferase
PS417_23845		-1.1	-2.3	hemin ABC transporter ATP-binding protein
PS417_08540		-1.1	-2.3	RNA helicase
PS417_13855		-1.1	-1.2	acetyl-CoA acetyltransferase
PS417_02880		-1.1	-1.9	copper chaperone
PS417_03385		-1.1	-0.9	flavin reductase
PS417_06165		-1.1	-1.9	thiamine biosynthesis protein ThiF
PS417_06075		-1.1	-1.0	hypothetical protein
PS417_14975		-1.1	-1.7	tRNA hydroxylase
PS417_07995		-1.1	-3.2	LOG family protein
PS417_02255		-1.1	-1.9	lipopolysaccharide kinase
PS417_17215		-1.1	-2.2	peptidylprolyl isomerase
PS417_10920		-1.1	-1.5	LysR family transcriptional regulator
PS417_00900		-1.1	-1.2	4-aminobutyrate aminotransferase
PS417_12195		-1.1	-2.5	ABC transporter permease
PS417_17640		-1.1	-3.6	macrolide ABC transporter ATP-binding protein
PS417_05395		-1.1	-4.7	glycosyl transferase family 51
PS417_02555		-1.0	-7.0	exoribonuclease R
PS417_18540		-1.0	-1.7	colicin V production CvpA
PS417_10210		-1.0	-2.2	hypothetical protein
PS417_07640		-1.0	-2.3	glyceraldehyde-3-phosphate dehydrogenase
PS417_08245		-1.0	-1.1	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase
PS417_17240		-1.0	-2.2	trigger factor
PS417_24135		-1.0	-1.3	hypothetical protein
PS417_16490		-1.0	-1.2	cell division protein FtsK
PS417_04390		-1.0	-4.3	toluene tolerance protein
PS417_15400		-1.0	-1.2	hypothetical protein
PS417_03145		-1.0	-1.8	acetyl-CoA acetyltransferase
PS417_02975		-1.0	-3.6	3-dehydroquinate dehydratase
PS417_10245		-1.0	-1.1	hypothetical protein
PS417_19415		-1.0	-1.5	allantoinase
PS417_23475		-1.0	-0.9	hypothetical protein

Specific Phenotypes

For 11 genes in this experiment

For supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days in Pseudomonas simiae WCS417

For supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms