Experiment set7IT047 for Pseudomonas putida KT2440

Compare to:

3-methyl-3-buten-1-ol 0.25 vol% carbon source

200 most important genes:

  gene name fitness t score description  
PP_1985 -7.1 -4.9 3-isopropylmalate dehydratase large subunit compare
PP_0356 -6.7 -8.0 malate synthase G compare
PP_0290 -6.5 -6.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1986 -6.4 -4.4 3-isopropylmalate dehydratase small subunit compare
PP_4678 -6.2 -14.4 Ketol-acid reductoisomerase compare
PP_0422 -6.2 -7.3 Indole-3-glycerol phosphate synthase compare
PP_4116 -6.1 -12.3 isocitrate lyase compare
PP_4065 -5.8 -12.9 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_1988 -5.7 -10.9 3-isopropylmalate dehydrogenase compare
PP_5289 -5.4 -6.4 Acetylglutamate kinase compare
PP_4890 -5.4 -8.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_5659 -5.4 -5.9 protein of unknown function compare
PP_4680 -5.2 -16.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -5.1 -10.3 Argininosuccinate synthase compare
PP_0082 -5.1 -6.9 tryptophan synthase alpha chain compare
PP_4679 -5.0 -9.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -5.0 -9.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0417 -5.0 -20.3 Anthranilate synthase component 1 compare
PP_0967 -5.0 -13.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0691 -4.8 -3.3 Glutamate 5-kinase compare
PP_0184 -4.8 -7.3 Argininosuccinate lyase compare
PP_4943 -4.8 -3.3 putative Glycosyl transferase compare
PP_5128 -4.7 -9.4 Dihydroxy-acid dehydratase compare
PP_2001 -4.7 -12.9 O-succinylhomoserine sulfhydrylase compare
PP_4067 -4.7 -9.0 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_5098 -4.6 -11.1 methionine biosynthesis protein MetW compare
PP_0289 -4.6 -9.6 Imidazoleglycerol-phosphate dehydratase compare
PP_0378 -4.6 -12.0 Pyrroloquinoline-quinone synthase compare
PP_4723 -4.6 -4.5 Carbamoyl-phosphate synthase large chain compare
PP_0083 -4.5 -7.5 tryptophan synthase beta chain compare
PP_0376 -4.4 -12.1 Coenzyme PQQ synthesis protein E compare
PP_0966 -4.4 -13.3 Histidinol dehydrogenase compare
PP_5097 -4.4 -15.5 homoserine O-acetyltransferase compare
PP_3511 -4.4 -9.0 Branched-chain-amino-acid aminotransferase compare
PP_4724 -4.3 -3.0 Carbamoyl-phosphate synthase small chain compare
PP_2668 -4.3 -5.6 ABC efflux transporter, ATP-binding protein compare
PP_0965 -4.3 -8.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0381 -4.2 -11.2 Coenzyme PQQ synthesis protein F compare
PP_2675 -4.2 -5.1 Cytochrome c-type protein compare
PP_4064 -4.0 -13.0 isovaleryl-CoA dehydrogenase compare
PP_0421 -4.0 -6.7 Anthranilate phosphoribosyltransferase compare
PP_5185 -4.0 -7.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0293 -4.0 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5095 -3.9 -2.7 pyrroline-5-carboxylate reductase compare
PP_0787 -3.9 -3.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1231 -3.9 -7.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0377 -3.6 -2.9 coenzyme PQQ synthesis protein D compare
PP_4909 -3.6 -8.7 phosphoserine phosphatase compare
PP_1079 -3.6 -7.5 Ornithine carbamoyltransferase compare
PP_0292 -3.5 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4696 -3.5 -6.2 Nitrogen regulation protein NR(I) compare
PP_5014 -3.4 -4.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_5155 -3.3 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2371 -3.3 -6.2 Sulphite reductase hemoprotein, beta subunit compare
PP_0420 -3.3 -10.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2168 -3.2 -11.3 Transaldolase compare
PP_2667 -3.2 -12.3 ABC transporter compare
PP_1328 -3.1 -3.5 Protein MraZ compare
PP_1025 -3.0 -8.7 2-isopropylmalate synthase compare
PP_4066 -3.0 -4.1 methylglutaconyl-CoA hydratase compare
PP_5538 -3.0 -7.1 putative ABC transporter, substrate-binding protein compare
PP_1654 -3.0 -4.9 cysteine synthase B compare
PP_4004 -3.0 -5.5 DNA translocase FtsK compare
PP_4693 -3.0 -7.3 RNA polymerase-binding transcription factor DksA compare
PP_3122 -2.9 -6.2 acetoacetyl CoA-transferase (subunit A) compare
PP_2402 -2.8 -3.6 putative Sensor histidine kinase compare
PP_2669 -2.7 -9.3 putative Outer membrane protein compare
PP_2679 -2.7 -13.4 quinoprotein ethanol dehydrogenase compare
PP_2433 -2.7 -2.2 conserved protein of unknown function compare
PP_1826 -2.6 -3.2 Hydrolase, isochorismatase family compare
PP_4058 -2.6 -11.5 1,4-alpha-glucan branching enzyme compare
PP_4999 -2.5 -1.7 dihydroorotase-like protein compare
PP_1109 -2.4 -15.1 Transcriptional regulator, GntR family compare
PP_4120 -2.4 -4.2 NADH-quinone oxidoreductase subunit B compare
PP_2665 -2.4 -6.9 Glycerol metabolism activator compare
PP_3999 -2.4 -5.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1216 -2.4 -3.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0938 -2.4 -11.1 conserved protein of unknown function compare
PP_1598 -2.3 -4.8 regulatory intramembrane protein RIP zinc protease compare
PP_0735 -2.3 -2.8 molybdopterin-synthase adenylyltransferase compare
PP_2370 -2.3 -3.4 conserved protein of unknown function compare
PP_0833 -2.3 -3.4 queuine tRNA-ribosyltransferase compare
PP_1428 -2.3 -4.5 Sigma factor AlgU negative regulatory protein compare
PP_2328 -2.3 -5.5 Phosphoadenosine phosphosulfate reductase compare
PP_1734 -2.3 -3.0 Probable septum site-determining protein MinC compare
PP_1111 -2.2 -7.2 putative Synthetase compare
PP_4098 -2.2 -2.4 UvrABC system protein C compare
PP_0379 -2.1 -6.1 Coenzyme PQQ synthesis protein B compare
PP_0362 -2.1 -11.6 Biotin synthase compare
PP_3286 -2.0 -7.8 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2682 -2.0 -5.8 Fe-containing alcohol dehydrogenase compare
PP_1898 -2.0 -4.5 MotA/TolQ/ExbB proton channel family protein compare
PP_4804 -2.0 -4.0 RlpA-like lipoprotein compare
PP_1719 -2.0 -8.0 Tail-specific protease prc compare
PP_4994 -2.0 -6.8 conserved protein of unknown function compare
PP_4782 -2.0 -6.3 Phosphomethylpyrimidine kinase compare
PP_1616 -1.9 -8.5 formaldehyde dehydrogenase, glutathione-dependent compare
PP_5104 -1.9 -8.9 thiazole synthase compare
PP_4799 -1.9 -1.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4124 -1.9 -4.6 NADH-quinone oxidoreductase subunit G compare
PP_0291 -1.9 -2.5 conserved protein of unknown function compare
PP_1233 -1.9 -4.8 sulfurtransferase compare
PP_0127 -1.9 -5.9 Thiol:disulfide interchange protein compare
PP_4131 -1.9 -5.4 NADH-quinone oxidoreductase subunit N compare
PP_4063 -1.9 -8.1 putative Long-chain-fatty-acid-CoA ligase compare
PP_2327 -1.8 -4.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5015 -1.8 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2676 -1.8 -8.0 putative Periplasmic binding protein compare
PP_2820 -1.8 -2.9 HTH-type transcriptional regulator nfxB compare
PP_4984 -1.8 -8.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2217 -1.7 -3.6 enoyl-CoA hydratase compare
PP_5652 -1.7 -1.9 conserved protein of unknown function, phage origin compare
PP_5309 -1.6 -3.0 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1430 -1.6 -8.8 putative periplasmic serine endoprotease DegP-like compare
PP_3123 -1.6 -6.8 acetoacetyl CoA-transferase (subunit B) compare
PP_0363 -1.6 -9.8 8-amino-7-oxononanoate synthase compare
PP_4129 -1.6 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0393 -1.6 -1.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4874 -1.5 -1.5 50S ribosomal protein L9 compare
PP_2084 -1.5 -5.2 Putative regulator of ribonuclease activity compare
PP_3248 -1.5 -2.0 Dyp-type peroxidase family protein compare
PP_1217 -1.5 -4.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1733 -1.5 -2.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4993 -1.5 -4.2 Glutathione synthetase compare
PP_5217 -1.5 -11.7 Polyphosphate kinase compare
PP_1387 -1.5 -3.2 Probable HTH-type transcriptional regulator TtgR compare
PP_1678 -1.5 -3.6 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1097 -1.5 -2.2 Methionine--tRNA ligase compare
PP_5090 -1.5 -1.6 putative cell division protein compare
PP_0366 -1.5 -6.1 dethiobiotin synthetase compare
PP_0365 -1.4 -7.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5748 -1.4 -2.3 cytochrome c heme lyase subunit compare
PP_0364 -1.4 -5.0 pimeloyl-[acp] methyl ester esterase compare
PP_3458 -1.4 -8.1 Butyrate--CoA ligase compare
PP_4695 -1.4 -6.8 Sensory box histidine kinase compare
PP_0846 -1.4 -1.7 DnaK-like molecular chaperone specific for IscU compare
PP_4977 -1.4 -7.7 5,10-methylenetetrahydrofolate reductase compare
PP_1215 -1.4 -1.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_4700 -1.3 -1.7 pantothenate synthetase compare
PP_4964 -1.3 -3.0 D-erythrose 4-phosphate dehydrogenase compare
PP_4342 -1.3 -3.9 flagellar synthesis regulator, putative ATPase compare
PP_0856 -1.3 -3.9 conserved lipoprotein of unknown function compare
PP_3121 -1.3 -2.8 transcriptional regulator, LysR family compare
PP_2356 -1.3 -8.6 putative Phytochrome family protein compare
PP_2375 -1.3 -7.7 cobalamin-dependent methionine synthase compare
PP_2302 -1.3 -4.1 DNA-binding, ATP-dependent protease compare
PP_4966 -1.3 -1.6 transcriptional regulator of methionine metabolism compare
PP_4940 -1.2 -4.9 Putative glycosyltransferase compare
PP_1198 -1.2 -3.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2390 -1.2 -5.2 Transcriptional regulator, LysR family compare
PP_4565 -1.2 -8.1 Isocitrate dehydrogenase kinase/phosphatase compare
PP_3467 -1.2 -5.8 Sigma-54 dependent transcriptional regulator compare
PP_0319 -1.2 -2.4 conserved protein of unknown function compare
PP_t12 -1.2 -1.3 tRNA-Thr compare
PP_2025 -1.2 -3.2 Exonuclease SbcD compare
PP_0022 -1.2 -1.6 hypothetical protein compare
PP_3506 -1.2 -3.1 Magnesium chelatase, subunit ChII compare
PP_5230 -1.2 -2.4 Tyrosine recombinase XerC compare
PP_4130 -1.1 -3.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5313 -1.1 -2.5 DNA-binding protein HU-alpha compare
PP_2683 -1.1 -2.7 putative sensory box histidine kinase/response regulator compare
PP_4320 -1.1 -3.3 cytochrome c-type biogenesis protein compare
PP_5216 -1.1 -2.2 exopolyphosphatase compare
PP_1629 -1.1 -4.0 Protein RecA compare
PP_5639 -1.1 -4.3 conserved exported protein of unknown function compare
PP_5075 -1.1 -7.1 glutamate synthase (NADPH) beta subunit compare
PP_4620 -1.1 -6.0 Fumarylacetoacetase compare
PP_1110 -1.1 -1.7 serine acetyltransferase compare
PP_0809 -1.1 -6.2 disulfide bond formation protein B compare
PP_3459 -1.1 -7.2 quinohemoprotein amine dehydrogenase, beta subunit compare
PP_4895 -1.1 -2.7 tRNA dimethylallyltransferase compare
PP_4699 -1.0 -2.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5035 -1.0 -4.6 Histidine utilization repressor compare
PP_3065 -1.0 -3.8 Pyocin R2_PP, tail formation compare
PP_0435 -1.0 -7.9 Peptidase, M23/M37 family compare
PP_3726 -1.0 -1.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_3064 -1.0 -1.5 Phage tail protein compare
PP_3821 -1.0 -6.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2060 -1.0 -2.1 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0962 -1.0 -3.0 toluene-tolerance protein compare
PP_4121 -1.0 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_1783 -1.0 -1.6 dTDP-glucose pyrophosphorylase compare
PP_3649 -1.0 -2.3 Transcriptional regulator, GntR family compare
PP_4938 -1.0 -4.7 putative Glycosyl transferase compare
PP_5328 -1.0 -2.4 putative phosphate transport system permease protein compare
PP_2898 -1.0 -2.1 conserved exported protein of unknown function compare
PP_0949 -0.9 -4.3 putative ATP-binding protein UPF0042 compare
PP_0122 -0.9 -2.1 conserved exported protein of unknown function compare
PP_3946 -0.9 -1.3 HTH-type transcriptional repressor NicR compare
PP_5473 -0.9 -2.5 putative transcriptional regulator, LuxR family compare
PP_1468 -0.9 -2.3 Tyrosine recombinase XerD compare
PP_1999 -0.9 -1.4 membrane protein required for colicin V production compare
PP_4828 -0.9 -1.4 Precorrin-8X methylmutase compare
PP_5000 -0.9 -1.0 peptidase component of the ATP-dependent HslVU protease compare
PP_1663 -0.9 -4.6 conserved exported protein of unknown function compare
PP_4143 -0.9 -3.6 conserved protein of unknown function compare
PP_3603 -0.9 -4.1 Transcriptional regulator, GntR family compare
PP_5352 -0.9 -5.5 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_1876 -0.9 -2.4 putative ATP/GTP-binding protein of the AAA+ family compare
PP_3903 -0.9 -1.0 conserved protein of unknown function compare


Specific Phenotypes

For 18 genes in this experiment

For carbon source 3-methyl-3-butenol in Pseudomonas putida KT2440

For carbon source 3-methyl-3-butenol across organisms