Experiment set7IT046 for Pseudomonas putida KT2440

Compare to:

3-methyl-3-buten-1-ol 0.1 vol% carbon source

200 most important genes:

  gene name fitness t score description  
PP_4679 -6.6 -6.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1988 -6.5 -8.9 3-isopropylmalate dehydrogenase compare
PP_1986 -6.5 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_4065 -6.3 -11.3 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_2675 -6.2 -6.0 Cytochrome c-type protein compare
PP_4678 -6.2 -15.9 Ketol-acid reductoisomerase compare
PP_0787 -6.1 -6.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0422 -6.1 -7.3 Indole-3-glycerol phosphate synthase compare
PP_4067 -6.0 -10.8 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_1995 -6.0 -7.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4116 -5.9 -13.2 isocitrate lyase compare
PP_0967 -5.8 -12.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3511 -5.8 -10.3 Branched-chain-amino-acid aminotransferase compare
PP_0290 -5.8 -8.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0356 -5.7 -11.5 malate synthase G compare
PP_1985 -5.6 -6.7 3-isopropylmalate dehydratase large subunit compare
PP_0966 -5.5 -13.9 Histidinol dehydrogenase compare
PP_4680 -5.5 -16.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5659 -5.5 -6.2 protein of unknown function compare
PP_5185 -5.4 -6.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0082 -5.4 -6.4 tryptophan synthase alpha chain compare
PP_0293 -5.4 -4.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0184 -5.3 -6.3 Argininosuccinate lyase compare
PP_2682 -5.3 -7.1 Fe-containing alcohol dehydrogenase compare
PP_0376 -5.3 -13.2 Coenzyme PQQ synthesis protein E compare
PP_5097 -5.3 -16.2 homoserine O-acetyltransferase compare
PP_5289 -5.2 -7.1 Acetylglutamate kinase compare
PP_0289 -5.2 -10.0 Imidazoleglycerol-phosphate dehydratase compare
PP_0965 -5.2 -12.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5098 -5.1 -10.4 methionine biosynthesis protein MetW compare
PP_0378 -5.1 -11.8 Pyrroloquinoline-quinone synthase compare
PP_0691 -4.9 -3.4 Glutamate 5-kinase compare
PP_0417 -4.9 -21.2 Anthranilate synthase component 1 compare
PP_0083 -4.9 -6.7 tryptophan synthase beta chain compare
PP_1079 -4.9 -7.7 Ornithine carbamoyltransferase compare
PP_5128 -4.6 -9.8 Dihydroxy-acid dehydratase compare
PP_4723 -4.6 -6.3 Carbamoyl-phosphate synthase large chain compare
PP_1088 -4.6 -12.8 Argininosuccinate synthase compare
PP_0381 -4.6 -9.3 Coenzyme PQQ synthesis protein F compare
PP_4066 -4.4 -3.0 methylglutaconyl-CoA hydratase compare
PP_0420 -4.3 -12.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2001 -4.3 -10.8 O-succinylhomoserine sulfhydrylase compare
PP_4064 -4.1 -12.4 isovaleryl-CoA dehydrogenase compare
PP_0421 -4.1 -8.3 Anthranilate phosphoribosyltransferase compare
PP_4696 -4.1 -6.2 Nitrogen regulation protein NR(I) compare
PP_4890 -4.0 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_2665 -4.0 -6.6 Glycerol metabolism activator compare
PP_5095 -4.0 -2.7 pyrroline-5-carboxylate reductase compare
PP_4724 -3.9 -4.7 Carbamoyl-phosphate synthase small chain compare
PP_1231 -3.8 -9.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0377 -3.7 -3.2 coenzyme PQQ synthesis protein D compare
PP_2371 -3.7 -6.5 Sulphite reductase hemoprotein, beta subunit compare
PP_4909 -3.6 -10.1 phosphoserine phosphatase compare
PP_1826 -3.5 -5.2 Hydrolase, isochorismatase family compare
PP_1110 -3.5 -4.9 serine acetyltransferase compare
PP_0292 -3.4 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5155 -3.4 -5.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1111 -3.4 -8.0 putative Synthetase compare
PP_1109 -3.4 -14.2 Transcriptional regulator, GntR family compare
PP_1654 -3.2 -5.2 cysteine synthase B compare
PP_0362 -3.1 -13.0 Biotin synthase compare
PP_1215 -3.1 -2.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_4994 -3.1 -8.3 conserved protein of unknown function compare
PP_5014 -3.0 -4.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_0379 -3.0 -5.3 Coenzyme PQQ synthesis protein B compare
PP_1025 -3.0 -9.1 2-isopropylmalate synthase compare
PP_2433 -2.8 -4.6 conserved protein of unknown function compare
PP_1898 -2.8 -6.6 MotA/TolQ/ExbB proton channel family protein compare
PP_5015 -2.8 -6.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1719 -2.7 -12.6 Tail-specific protease prc compare
PP_2669 -2.7 -8.1 putative Outer membrane protein compare
PP_5090 -2.7 -2.2 putative cell division protein compare
PP_3999 -2.6 -5.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4999 -2.6 -1.8 dihydroorotase-like protein compare
PP_4693 -2.6 -6.1 RNA polymerase-binding transcription factor DksA compare
PP_2668 -2.5 -3.6 ABC efflux transporter, ATP-binding protein compare
PP_1328 -2.5 -1.8 Protein MraZ compare
PP_5538 -2.5 -7.4 putative ABC transporter, substrate-binding protein compare
PP_2168 -2.5 -11.9 Transaldolase compare
PP_3122 -2.5 -7.3 acetoacetyl CoA-transferase (subunit A) compare
PP_1430 -2.5 -11.8 putative periplasmic serine endoprotease DegP-like compare
PP_4004 -2.5 -4.6 DNA translocase FtsK compare
PP_2683 -2.4 -3.7 putative sensory box histidine kinase/response regulator compare
PP_2679 -2.4 -14.5 quinoprotein ethanol dehydrogenase compare
PP_2667 -2.3 -10.9 ABC transporter compare
PP_1734 -2.3 -3.1 Probable septum site-determining protein MinC compare
PP_4129 -2.3 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5313 -2.3 -3.8 DNA-binding protein HU-alpha compare
PP_1217 -2.2 -5.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3121 -2.2 -5.7 transcriptional regulator, LysR family compare
PP_2402 -2.2 -3.8 putative Sensor histidine kinase compare
PP_4126 -2.2 -2.5 NADH-quinone oxidoreductase subunit I compare
PP_3123 -2.1 -9.9 acetoacetyl CoA-transferase (subunit B) compare
PP_5104 -2.1 -10.8 thiazole synthase compare
PP_4120 -2.1 -4.5 NADH-quinone oxidoreductase subunit B compare
PP_4799 -2.0 -2.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4131 -2.0 -5.6 NADH-quinone oxidoreductase subunit N compare
PP_1216 -1.9 -3.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4984 -1.9 -11.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1428 -1.9 -3.6 Sigma factor AlgU negative regulatory protein compare
PP_0366 -1.8 -7.2 dethiobiotin synthetase compare
PP_4943 -1.8 -2.3 putative Glycosyl transferase compare
PP_0735 -1.8 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_4063 -1.8 -9.9 putative Long-chain-fatty-acid-CoA ligase compare
PP_0938 -1.8 -9.6 conserved protein of unknown function compare
PP_1233 -1.8 -5.6 sulfurtransferase compare
PP_0365 -1.8 -7.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_5748 -1.8 -2.9 cytochrome c heme lyase subunit compare
PP_2327 -1.7 -6.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4058 -1.7 -9.6 1,4-alpha-glucan branching enzyme compare
PP_5217 -1.7 -13.6 Polyphosphate kinase compare
PP_4320 -1.7 -4.9 cytochrome c-type biogenesis protein compare
PP_4695 -1.6 -6.3 Sensory box histidine kinase compare
PP_0127 -1.6 -8.0 Thiol:disulfide interchange protein compare
PP_2328 -1.6 -4.7 Phosphoadenosine phosphosulfate reductase compare
PP_2370 -1.6 -2.1 conserved protein of unknown function compare
PP_0364 -1.6 -8.9 pimeloyl-[acp] methyl ester esterase compare
PP_0363 -1.6 -10.8 8-amino-7-oxononanoate synthase compare
PP_2820 -1.6 -2.8 HTH-type transcriptional regulator nfxB compare
PP_2390 -1.5 -7.9 Transcriptional regulator, LysR family compare
PP_t12 -1.5 -1.7 tRNA-Thr compare
PP_4940 -1.5 -6.5 Putative glycosyltransferase compare
PP_4804 -1.5 -3.6 RlpA-like lipoprotein compare
PP_2000 -1.4 -1.6 amidophosphoribosyl transferase compare
PP_1663 -1.4 -7.5 conserved exported protein of unknown function compare
PP_5075 -1.4 -9.3 glutamate synthase (NADPH) beta subunit compare
PP_2676 -1.4 -6.5 putative Periplasmic binding protein compare
PP_4782 -1.4 -4.3 Phosphomethylpyrimidine kinase compare
PP_4098 -1.4 -2.3 UvrABC system protein C compare
PP_5639 -1.3 -5.9 conserved exported protein of unknown function compare
PP_4938 -1.3 -7.2 putative Glycosyl transferase compare
PP_2302 -1.3 -5.0 DNA-binding, ATP-dependent protease compare
PP_0833 -1.3 -2.7 queuine tRNA-ribosyltransferase compare
PP_4936 -1.3 -5.7 O-antigen polymerase compare
PP_1598 -1.2 -3.7 regulatory intramembrane protein RIP zinc protease compare
PP_3649 -1.2 -2.7 Transcriptional regulator, GntR family compare
PP_0435 -1.2 -9.7 Peptidase, M23/M37 family compare
PP_4828 -1.2 -1.4 Precorrin-8X methylmutase compare
PP_4124 -1.2 -3.6 NADH-quinone oxidoreductase subunit G compare
PP_5230 -1.2 -3.1 Tyrosine recombinase XerC compare
PP_4565 -1.2 -9.2 Isocitrate dehydrogenase kinase/phosphatase compare
PP_1733 -1.2 -1.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_3459 -1.2 -8.0 quinohemoprotein amine dehydrogenase, beta subunit compare
PP_4121 -1.2 -3.3 NADH-quinone oxidoreductase subunit C/D compare
PP_3506 -1.2 -4.1 Magnesium chelatase, subunit ChII compare
PP_1198 -1.2 -3.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4964 -1.2 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_5216 -1.2 -2.3 exopolyphosphatase compare
PP_1783 -1.2 -1.8 dTDP-glucose pyrophosphorylase compare
PP_0846 -1.2 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_4699 -1.2 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3286 -1.1 -5.2 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2217 -1.1 -2.4 enoyl-CoA hydratase compare
PP_2889 -1.1 -3.0 putative Transmembrane regulator PrtR compare
PP_0719 -1.1 -1.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1616 -1.1 -6.2 formaldehyde dehydrogenase, glutathione-dependent compare
PP_5309 -1.1 -2.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2084 -1.1 -4.8 Putative regulator of ribonuclease activity compare
PP_1845 -1.1 -2.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_3821 -1.1 -7.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0809 -1.1 -6.9 disulfide bond formation protein B compare
PP_5303 -1.0 -4.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4541 -1.0 -3.0 peptidyl-prolyl cis-trans isomerase A (rotamase A) compare
PP_2388 -1.0 -3.5 Transporter, LysE family compare
PP_3458 -1.0 -5.0 Butyrate--CoA ligase compare
PP_1142 -1.0 -1.4 conserved protein of unknown function compare
PP_4620 -1.0 -6.3 Fumarylacetoacetase compare
PP_4993 -1.0 -3.3 Glutathione synthetase compare
PP_0957 -1.0 -2.0 D-arabinose 5-phosphate isomerase compare
PP_4701 -1.0 -1.3 glucose-6-phosphate isomerase compare
PP_5310 -1.0 -3.5 junction-specific ATP-dependent DNA helicase compare
PP_4977 -1.0 -6.4 5,10-methylenetetrahydrofolate reductase compare
PP_1387 -1.0 -3.2 Probable HTH-type transcriptional regulator TtgR compare
PP_3583 -1.0 -7.9 multidrug efflux transport system - membrane subunit compare
PP_4895 -1.0 -2.8 tRNA dimethylallyltransferase compare
PP_4342 -1.0 -4.2 flagellar synthesis regulator, putative ATPase compare
PP_5227 -1.0 -4.7 diaminopimelate decarboxylase compare
PP_1503 -1.0 -3.7 conserved protein of unknown function compare
PP_3461 -1.0 -5.0 quinohemoprotein amine dehydrogenase modification protein compare
PP_1553 -1.0 -1.7 conserved protein of unknown function compare
PP_0902 -1.0 -6.7 integral membrane sensor signal transduction histidine kinase compare
PP_3248 -1.0 -1.7 Dyp-type peroxidase family protein compare
PP_2847 -1.0 -2.1 Urease accessory protein UreJ compare
PP_2568 -0.9 -1.4 Ring-cleaving dioxygenase compare
PP_3065 -0.9 -3.4 Pyocin R2_PP, tail formation compare
PP_5352 -0.9 -6.1 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_3582 -0.9 -5.9 RND efflux transporter, outer membrane protein compare
PP_4785 -0.9 -5.0 conserved exported protein of unknown function compare
PP_2356 -0.9 -6.1 putative Phytochrome family protein compare
PP_0901 -0.9 -3.9 DNA-binding response regulator compare
PP_3467 -0.9 -4.1 Sigma-54 dependent transcriptional regulator compare
PP_5146 -0.9 -4.5 RNA pyrophosphohydrolase compare
PP_2375 -0.9 -6.5 cobalamin-dependent methionine synthase compare
PP_0380 -0.8 -1.9 Coenzyme PQQ synthesis protein A compare
PP_3585 -0.8 -5.4 multidrug efflux transport system - putative membrane fusion protein compare
PP_4571 -0.8 -4.3 cysteine synthase A compare
PP_0406 -0.8 -4.4 Nucleotidyltransferase family protein compare
PP_4880 -0.8 -4.6 exoribonuclease R compare
PP_2611 -0.8 -2.0 membrane protein of unknown function compare
PP_0758 -0.8 -3.7 conserved protein of unknown function compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source 3-methyl-3-butenol in Pseudomonas putida KT2440

For carbon source 3-methyl-3-butenol across organisms