Experiment set7IT045 for Pseudomonas putida KT2440

Compare to:

Valerolactam 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.0 -4.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -5.5 -3.8 3-isopropylmalate dehydratase small subunit compare
PP_4678 -5.2 -13.8 Ketol-acid reductoisomerase compare
PP_0422 -5.0 -6.1 Indole-3-glycerol phosphate synthase compare
PP_4679 -4.9 -6.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1988 -4.9 -9.3 3-isopropylmalate dehydrogenase compare
PP_1985 -4.6 -6.3 3-isopropylmalate dehydratase large subunit compare
PP_4909 -4.3 -8.7 phosphoserine phosphatase compare
PP_0213 -4.2 -6.5 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_0290 -4.2 -9.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0083 -4.2 -4.1 tryptophan synthase beta chain compare
PP_0082 -4.1 -5.6 tryptophan synthase alpha chain compare
PP_3511 -4.0 -8.9 Branched-chain-amino-acid aminotransferase compare
PP_4680 -4.0 -14.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -4.0 -9.6 Argininosuccinate synthase compare
PP_5289 -3.9 -6.0 Acetylglutamate kinase compare
PP_0966 -3.9 -10.7 Histidinol dehydrogenase compare
PP_1995 -3.8 -8.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2910 -3.8 -10.0 L-2-hydroxyglutarate oxidase compare
PP_4723 -3.6 -5.0 Carbamoyl-phosphate synthase large chain compare
PP_5185 -3.6 -6.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1079 -3.6 -7.2 Ornithine carbamoyltransferase compare
PP_5098 -3.6 -9.2 methionine biosynthesis protein MetW compare
PP_0417 -3.5 -16.3 Anthranilate synthase component 1 compare
PP_0214 -3.5 -7.8 4-aminobutyrate aminotransferase compare
PP_0967 -3.4 -10.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5128 -3.4 -8.4 Dihydroxy-acid dehydratase compare
PP_2909 -3.4 -8.4 glutarate hydroxylase (from data) compare
PP_0289 -3.3 -9.2 Imidazoleglycerol-phosphate dehydratase compare
PP_4724 -3.2 -3.1 Carbamoyl-phosphate synthase small chain compare
PP_0184 -3.2 -7.1 Argininosuccinate lyase compare
PP_5097 -3.0 -11.5 homoserine O-acetyltransferase compare
PP_0421 -2.9 -6.9 Anthranilate phosphoribosyltransferase compare
PP_1025 -2.8 -11.0 2-isopropylmalate synthase compare
PP_0691 -2.7 -3.6 Glutamate 5-kinase compare
PP_5155 -2.6 -3.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4696 -2.6 -5.4 Nitrogen regulation protein NR(I) compare
PP_2371 -2.5 -5.0 Sulphite reductase hemoprotein, beta subunit compare
PP_0965 -2.5 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2001 -2.5 -6.6 O-succinylhomoserine sulfhydrylase compare
PP_1231 -2.4 -4.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5473 -2.4 -3.4 putative transcriptional regulator, LuxR family compare
PP_0787 -2.3 -4.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4890 -2.2 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_5114 -2.2 -2.1 putative adenine methyltransferase compare
PP_4693 -2.2 -5.7 RNA polymerase-binding transcription factor DksA compare
PP_3098 -2.2 -2.0 conserved protein of unknown function compare
PP_4874 -2.1 -2.0 50S ribosomal protein L9 compare
PP_0157 -2.1 -8.2 transcriptional activator of gcdH, LysR family compare
PP_0159 -2.0 -12.0 putative CoA-transferase family III compare
PP_0420 -2.0 -5.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5094 -2.0 -3.5 putative enzyme with PLP binding domain compare
PP_5015 -1.9 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0158 -1.9 -6.4 glutaryl-CoA dehydrogenase compare
PP_0319 -1.8 -2.5 conserved protein of unknown function compare
PP_5350 -1.8 -3.6 Transcriptional regulator, RpiR family compare
PP_3790 -1.8 -6.2 diaminopimelate epimerase compare
PP_4126 -1.8 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_0340 -1.8 -10.4 Glutamate-ammonia-ligase adenylyltransferase compare
PP_2327 -1.7 -4.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3999 -1.7 -3.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1664 -1.6 -3.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_4999 -1.6 -1.1 dihydroorotase-like protein compare
PP_0962 -1.6 -2.6 toluene-tolerance protein compare
PP_1426 -1.6 -9.8 L-aspartate oxidase compare
PP_2433 -1.5 -1.7 conserved protein of unknown function compare
PP_5145 -1.5 -12.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2168 -1.5 -6.4 Transaldolase compare
PP_4701 -1.5 -1.3 glucose-6-phosphate isomerase compare
PP_0888 -1.5 -1.7 Photosynthetic apparatus regulatory protein RegA compare
PP_5639 -1.4 -5.3 conserved exported protein of unknown function compare
PP_1571 -1.4 -2.1 conserved protein of unknown function compare
PP_2720 -1.4 -1.5 conserved protein of unknown function compare
PP_2740 -1.4 -2.7 Transcriptional regulator, MerR family compare
PP_5216 -1.4 -2.9 exopolyphosphatase compare
PP_0261 -1.4 -3.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2080 -1.3 -8.2 NAD-specific glutamate dehydrogenase compare
PP_2668 -1.3 -2.1 ABC efflux transporter, ATP-binding protein compare
PP_3755 -1.3 -6.1 3-hydroxybutyryl-CoA dehydrogenase compare
PP_0292 -1.3 -1.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2309 -1.3 -1.5 conserved protein of unknown function compare
PP_4116 -1.3 -5.8 isocitrate lyase compare
PP_3105 -1.3 -2.6 conserved membrane protein of unknown function compare
PP_2976 -1.2 -1.6 putative transposase compare
PP_4902 -1.2 -2.1 Oligoribonuclease compare
PP_1999 -1.2 -1.7 membrane protein required for colicin V production compare
PP_4121 -1.2 -2.7 NADH-quinone oxidoreductase subunit C/D compare
PP_1142 -1.2 -1.3 conserved protein of unknown function compare
PP_3392 -1.2 -1.7 conserved protein of unknown function compare
PP_4964 -1.2 -1.9 D-erythrose 4-phosphate dehydrogenase compare
PP_0512 -1.2 -1.9 hypothetical protein compare
PP_2313 -1.2 -1.0 conserved membrane protein of unknown function compare
PP_3151 -1.2 -6.3 NAD+-dependent succinate semialdehyde dehydrogenase compare
PP_1439 -1.2 -2.2 conserved exported protein of unknown function compare
PP_2302 -1.2 -3.7 DNA-binding, ATP-dependent protease compare
PP_5014 -1.2 -2.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_0240 -1.1 -2.8 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_4124 -1.1 -2.8 NADH-quinone oxidoreductase subunit G compare
PP_2031 -1.1 -1.6 conserved protein of unknown function compare
PP_0356 -1.1 -4.4 malate synthase G compare
PP_5652 -1.1 -2.5 conserved protein of unknown function, phage origin compare
PP_1145 -1.1 -4.5 RNA polymerase-associated protein RapA compare
PP_0834 -1.1 -1.8 Sec translocation complex subunit YajC compare
PP_0630 -1.1 -1.2 DNA gyrase inhibitor YacG compare
PP_4120 -1.1 -2.4 NADH-quinone oxidoreductase subunit B compare
PP_0291 -1.1 -1.5 conserved protein of unknown function compare
PP_1291 -1.1 -5.0 PhoH family protein compare
PP_1215 -1.1 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_3152 -1.1 -3.8 putative DNA-binding transcriptional regulator, LysR-type compare
PP_4910 -1.0 -2.0 conserved protein of unknown function compare
PP_5456 -1.0 -1.4 conserved protein of unknown function compare
PP_4620 -1.0 -4.4 Fumarylacetoacetase compare
PP_3378 -1.0 -2.1 putative 2-ketogluconokinase compare
PP_5310 -1.0 -3.3 junction-specific ATP-dependent DNA helicase compare
PP_4131 -1.0 -3.1 NADH-quinone oxidoreductase subunit N compare
PP_0694 -1.0 -2.3 conserved protein of unknown function compare
PP_1111 -1.0 -3.7 putative Synthetase compare
PP_3449 -1.0 -1.7 conserved exported protein of unknown function compare
PP_5201 -1.0 -2.3 conserved protein of unknown function, UPF0149 family compare
PP_1387 -1.0 -3.6 Probable HTH-type transcriptional regulator TtgR compare
PP_3065 -1.0 -4.7 Pyocin R2_PP, tail formation compare
PP_5702 -1.0 -1.6 conserved protein of unknown function compare
PP_3754 -1.0 -3.3 Beta-ketothiolase BktB compare
PP_1629 -1.0 -3.2 Protein RecA compare
PP_1326 -1.0 -2.4 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_3052 -1.0 -1.1 conserved protein of unknown function compare
PP_2152 -1.0 -2.0 glycerophosphoryl diester phosphodiesterase compare
PP_3035 -0.9 -1.7 conserved protein of unknown function compare
PP_1656 -0.9 -6.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_4895 -0.9 -2.0 tRNA dimethylallyltransferase compare
PP_3197 -0.9 -1.9 Glyoxalase family protein compare
PP_0040 -0.9 -2.2 hypothetical protein compare
PP_0368 -0.9 -5.9 putative Acyl-CoA dehydrogenase compare
PP_2793 -0.9 -1.7 Acyl-CoA dehydrogenase family protein compare
PP_2402 -0.9 -1.4 putative Sensor histidine kinase compare
PP_4957 -0.9 -1.9 conserved protein of unknown function compare
PP_1829 -0.9 -1.7 Hydrolase, alpha/beta fold family compare
PP_1548 -0.9 -2.3 conserved protein of unknown function compare
PP_0127 -0.9 -3.4 Thiol:disulfide interchange protein compare
PP_4699 -0.9 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2999 -0.8 -1.2 Glyoxalase family protein compare
PP_t12 -0.8 -0.9 tRNA-Thr compare
PP_4482 -0.8 -2.2 Transcriptional regulator, AraC family compare
PP_1454 -0.8 -2.6 conserved protein of unknown function compare
PP_5146 -0.8 -4.6 RNA pyrophosphohydrolase compare
PP_4779 -0.8 -6.3 AMP nucleosidase compare
PP_1733 -0.8 -1.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_5177 -0.8 -4.2 spermidine/putrescine ABC transporter - permease subunit compare
PP_4880 -0.8 -3.9 exoribonuclease R compare
PP_2307 -0.8 -2.4 conserved protein of unknown function compare
PP_0393 -0.8 -0.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4571 -0.8 -4.3 cysteine synthase A compare
PP_2403 -0.8 -1.2 Chemotaxis protein CheY compare
PP_2214 -0.8 -1.9 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4847 -0.8 -1.8 chaperone modulatory of CbpA co-chaperone protein compare
PP_3346 -0.8 -1.0 Nickel transporter ATP-binding protein compare
PP_3328 -0.8 -1.5 putative Ring-cleaving dioxygenase compare
PP_1702 -0.8 -1.9 Recombination-associated protein RdgC compare
PP_4940 -0.8 -3.4 Putative glycosyltransferase compare
PP_0048 -0.8 -1.0 conserved protein of unknown function compare
PP_1322 -0.8 -1.0 putative Lipoprotein compare
PP_1217 -0.8 -1.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3532 -0.8 -1.3 Transcriptional regulator, AsnC family compare
PP_2847 -0.8 -1.4 Urease accessory protein UreJ compare
PP_3855 -0.7 -1.8 conserved protein of unknown function compare
PP_4700 -0.7 -0.8 pantothenate synthetase compare
PP_1048 -0.7 -1.5 putative protein secretion protein for export compare
PP_1892 -0.7 -1.9 conserved protein of unknown function compare
PP_t11 -0.7 -1.6 tRNA-Lys compare
PP_0566 -0.7 -0.8 translation-related factor compare
PP_0627 -0.7 -1.7 conserved protein of unknown function compare
PP_1026 -0.7 -1.3 Peptidase, M23/M37 family compare
PP_1731 -0.7 -1.7 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_1216 -0.7 -1.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4133 -0.7 -1.3 Transcriptional regulator-related protein compare
PP_1062 -0.7 -1.3 MutT/nudix family protein compare
PP_0980 -0.7 -2.3 Probable cytosol aminopeptidase compare
PP_0232 -0.7 -0.9 ATP-binding taurine transporter subunit compare
PP_1190 -0.7 -1.5 conserved protein of unknown function compare
PP_5675 -0.7 -1.5 conserved protein of unknown function compare
PP_2429 -0.7 -1.6 putative Membrane protein compare
PP_0666 -0.7 -1.6 conserved protein of unknown function compare
PP_1788 -0.7 -2.2 conserved protein of unknown function compare
PP_5008 -0.7 -1.1 Poly granule-associated protein compare
PP_2322 -0.7 -3.4 Major outer membrane lipoprotein compare
PP_5565 -0.7 -2.7 conserved protein of unknown function compare
PP_1097 -0.7 -0.9 Methionine--tRNA ligase compare
PP_0697 -0.7 -2.8 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_5648 -0.7 -2.6 conserved exported protein of unknown function compare
PP_4814 -0.7 -1.5 ATP-dependent protease La domain protein compare
PP_5303 -0.7 -2.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1588 -0.7 -3.6 N-succinyl-L,L-diaminopimelate aminotransferase alternative compare
PP_1128 -0.7 -2.0 OmpA family protein compare
PP_5347 -0.7 -3.8 pyruvate carboxylase subunit A compare
PP_1513 -0.7 -1.1 Ribosomal RNA small subunit methyltransferase J compare
PP_4569 -0.7 -2.3 conserved protein of unknown function compare
PP_1683 -0.7 -1.6 Transcriptional regulator, MarR family compare
PP_5SB -0.7 -1.6 5S ribosomal RNA compare
PP_1109 -0.7 -4.5 Transcriptional regulator, GntR family compare
PP_5338 -0.7 -1.3 aspartate ammonia-lyase compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source 2-Piperidinone in Pseudomonas putida KT2440

For carbon source 2-Piperidinone across organisms